Wall clock time and date at job start Tue Mar 31 2020 02:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30074 * 124.95067 * 2 1 4 4 C 1.35874 * 109.64469 * 179.97438 * 3 2 1 5 5 C 1.39757 * 133.50937 * 180.02562 * 4 3 2 6 6 C 1.36548 * 119.95507 * 179.72217 * 5 4 3 7 7 C 1.39222 * 120.61763 * 0.48657 * 6 5 4 8 8 O 1.35949 * 119.83830 * 179.77040 * 7 6 5 9 9 C 1.42897 * 117.00103 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47442 * 23.87474 * 9 8 7 11 11 C 1.50700 * 109.46677 * 143.87162 * 9 8 7 12 12 H 1.07999 * 120.00874 * 25.53544 * 11 9 8 13 13 C 1.37886 * 119.99671 * 205.53582 * 11 9 8 14 14 N 1.31515 * 119.99888 * 185.07429 * 13 11 9 15 15 Si 1.86794 * 119.99936 * 5.07559 * 13 11 9 16 16 H 1.48506 * 109.47397 * 94.52717 * 15 13 11 17 17 H 1.48501 * 109.47112 * 214.52702 * 15 13 11 18 18 H 1.48502 * 109.47201 * 334.52489 * 15 13 11 19 19 C 1.52999 * 109.47400 * 263.86980 * 9 8 7 20 20 Cl 1.80301 * 109.46941 * 63.43803 * 19 9 8 21 21 C 1.38310 * 120.32859 * 359.49840 * 7 6 5 22 22 C 1.38799 * 119.64896 * 0.25016 * 21 7 6 23 23 N 1.36142 * 124.95923 * 179.97438 * 2 1 3 24 24 H 0.97003 * 126.35135 * 0.02562 * 23 2 1 25 25 H 1.08997 * 109.47225 * 89.97864 * 1 2 3 26 26 H 1.09002 * 109.46671 * 209.97424 * 1 2 3 27 27 H 1.08996 * 109.47263 * 329.97374 * 1 2 3 28 28 H 1.08004 * 120.02193 * 359.95015 * 5 4 3 29 29 H 1.08000 * 119.68895 * 180.24091 * 6 5 4 30 30 H 0.97005 * 120.00125 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.47260 * 183.44211 * 19 9 8 32 32 H 1.09002 * 109.46579 * 303.44212 * 19 9 8 33 33 H 1.08002 * 120.17894 * 180.23175 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2521 1.0661 0.0000 4 6 3.5627 0.7075 0.0006 5 6 4.7583 1.4311 0.0013 6 6 5.9542 0.7721 0.0075 7 6 5.9969 -0.6195 0.0030 8 8 7.1964 -1.2594 0.0045 9 6 7.1695 -2.6881 -0.0009 10 1 6.2245 -3.0322 -0.4212 11 6 8.3102 -3.2087 -0.8368 12 1 9.1983 -2.6092 -0.9721 13 6 8.2202 -4.4507 -1.4290 14 7 9.2524 -4.9476 -2.0749 15 14 6.6320 -5.4272 -1.3140 16 1 5.8057 -5.1727 -2.5215 17 1 6.9469 -6.8758 -1.2262 18 1 5.8807 -5.0097 -0.1030 19 6 7.3092 -3.2064 1.4319 20 17 5.8917 -2.6670 2.4069 21 6 4.8251 -1.3542 0.0026 22 6 3.6026 -0.6970 0.0014 23 7 2.2871 -1.1158 0.0005 24 1 1.9762 -2.0347 0.0006 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3633 -0.8903 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 4.7364 2.5109 0.0006 29 1 6.8755 1.3356 0.0119 30 1 9.1890 -5.8212 -2.4918 31 1 7.3501 -4.2955 1.4219 32 1 8.2248 -2.8123 1.8730 33 1 4.8611 -2.4336 0.0028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228326081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:49 Heat of formation + Delta-G solvation = -0.020352 kcal Electronic energy + Delta-G solvation = -19453.672100 eV Core-core repulsion = 16312.358462 eV Total energy + Delta-G solvation = -3141.313638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.04049 -40.56065 -37.47017 -36.64875 -35.17045 -34.01331 -32.60023 -31.70525 -30.68508 -27.96772 -27.23716 -24.27942 -23.37935 -21.99123 -21.73270 -19.95733 -18.76177 -18.29097 -17.86473 -16.75636 -16.51984 -16.12940 -15.63037 -15.24997 -15.19766 -14.74557 -14.67021 -14.30045 -13.91612 -13.82048 -13.53149 -13.31296 -13.12237 -12.93555 -12.78019 -12.42977 -12.00103 -11.93007 -11.74299 -11.51110 -11.29021 -11.01509 -10.89841 -10.71782 -9.34249 -8.55651 -8.51034 -6.63703 0.06263 0.55933 1.21369 1.26977 1.34929 1.36993 1.82430 1.95873 2.15006 2.46735 2.84897 2.90871 3.25371 3.67773 3.91737 4.11943 4.14586 4.22696 4.29151 4.38746 4.49462 4.57776 4.74299 4.75867 4.87535 5.03111 5.08360 5.16307 5.31915 5.37352 5.55071 5.74653 5.96412 6.46546 6.50560 6.70016 6.94100 7.04514 8.64141 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.005909 C = 0.005607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.207905 B = 4737.646002 C = 4992.764829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.274 3.726 3 N -0.520 5.520 4 C -0.016 4.016 5 C -0.033 4.033 6 C -0.156 4.156 7 C 0.145 3.855 8 O -0.314 6.314 9 C 0.184 3.816 10 H 0.053 0.947 11 C -0.538 4.538 12 H 0.047 0.953 13 C 0.039 3.961 14 N -0.918 5.918 15 Si 0.919 3.081 16 H -0.265 1.265 17 H -0.267 1.267 18 H -0.233 1.233 19 C -0.036 4.036 20 Cl -0.209 7.209 21 C -0.212 4.212 22 C 0.076 3.924 23 N -0.596 5.596 24 H 0.433 0.567 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.278 0.722 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 4.957 5.485 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.007 3.993 3 N -0.242 5.242 4 C -0.132 4.132 5 C -0.053 4.053 6 C -0.176 4.176 7 C 0.097 3.903 8 O -0.227 6.227 9 C 0.128 3.872 10 H 0.070 0.930 11 C -0.575 4.575 12 H 0.065 0.935 13 C -0.164 4.164 14 N -0.555 5.555 15 Si 0.740 3.260 16 H -0.190 1.190 17 H -0.192 1.192 18 H -0.156 1.156 19 C -0.099 4.099 20 Cl -0.182 7.182 21 C -0.234 4.234 22 C -0.035 4.035 23 N -0.211 5.211 24 H 0.274 0.726 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.173 0.827 29 H 0.168 0.832 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.955 5.805 5.461 18.735 hybrid contribution 0.220 -2.157 -0.202 2.177 sum -16.735 3.649 5.259 17.917 Atomic orbital electron populations 1.20559 0.80676 1.06044 1.05563 1.24468 0.97262 0.80219 0.97315 1.70310 1.00729 1.29068 1.24112 1.19261 0.92767 0.90763 1.10409 1.19972 0.87817 1.00470 0.97009 1.20187 0.99363 0.90617 1.07481 1.19019 0.84396 0.92635 0.94223 1.86189 1.26799 1.22503 1.87176 1.20604 0.98106 0.76493 0.91946 0.93004 1.20835 1.02055 1.02944 1.31660 0.93468 1.25687 0.99751 0.97763 0.93151 1.69965 1.31887 1.19069 1.34589 0.86157 0.79988 0.78973 0.80853 1.19046 1.19198 1.15622 1.25687 0.89297 1.02268 0.92682 1.98670 1.50856 1.92470 1.76251 1.19914 0.89449 0.99788 1.14266 1.18529 0.85699 0.95058 1.04246 1.43026 1.03785 1.10726 1.63513 0.72585 0.87874 0.87755 0.88077 0.82658 0.83237 0.91270 0.87978 0.88332 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.51 71.24 0.75 -0.08 16 2 C 0.27 6.58 8.08 137.90 1.11 7.69 16 3 N -0.52 -16.25 11.28 -179.84 -2.03 -18.28 16 4 C -0.02 -0.53 7.23 39.44 0.29 -0.25 16 5 C -0.03 -1.06 10.04 22.24 0.22 -0.83 16 6 C -0.16 -5.32 9.90 22.11 0.22 -5.10 16 7 C 0.15 5.73 6.04 22.52 0.14 5.87 16 8 O -0.31 -14.08 9.69 -92.98 -0.90 -14.98 16 9 C 0.18 8.33 1.70 29.85 0.05 8.38 16 10 H 0.05 2.31 2.90 -2.39 -0.01 2.30 16 11 C -0.54 -29.05 9.24 25.60 0.24 -28.82 16 12 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 13 C 0.04 2.06 5.47 84.66 0.46 2.52 16 14 N -0.92 -52.74 13.96 21.45 0.30 -52.44 16 15 Si 0.92 38.71 26.37 68.60 1.81 40.52 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.23 -8.83 5.97 99.48 0.59 -8.23 16 19 C -0.04 -1.43 5.95 71.98 0.43 -1.00 16 20 Cl -0.21 -7.44 25.77 -2.72 -0.07 -7.51 16 21 C -0.21 -7.90 7.19 22.42 0.16 -7.74 16 22 C 0.08 2.55 7.30 38.85 0.28 2.83 16 23 N -0.60 -15.16 6.24 -179.20 -1.12 -16.28 16 24 H 0.43 8.04 8.96 -92.71 -0.83 7.21 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 29 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 31 H 0.10 3.85 6.91 -2.39 -0.02 3.84 16 32 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 33 H 0.12 4.69 5.06 -2.91 -0.01 4.68 16 Total: -1.00 -67.11 291.03 2.56 -64.55 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.22 Total: 20.96 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 4.35 Total: -16.55 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.85 Total: -86.99 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.90 Total: -14.98 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.81 Total: 40.52 kcal Atomic # 17 Polarization: -7.44 SS G_CDS: -0.07 Total: -7.51 kcal Total: -67.11 2.56 -64.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228326081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.528 kcal (2) G-P(sol) polarization free energy of solvation -67.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds