Wall clock time and date at job start Tue Mar 31 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36558 * 119.96257 * 2 1 4 4 C 1.39357 * 120.76923 * 180.02562 * 3 2 1 5 5 O 1.35982 * 119.81963 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00264 * 185.68140 * 5 4 3 7 7 H 1.08994 * 109.47637 * 21.43128 * 6 5 4 8 8 C 1.50707 * 109.47023 * 141.43607 * 6 5 4 9 9 H 1.08001 * 120.00293 * 92.81327 * 8 6 5 10 10 C 1.37878 * 119.99440 * 272.80798 * 8 6 5 11 11 N 1.31514 * 120.00533 * 356.91948 * 10 8 6 12 12 Si 1.86805 * 119.99849 * 176.91866 * 10 8 6 13 13 H 1.48505 * 109.46756 * 60.00172 * 12 10 8 14 14 H 1.48496 * 109.47353 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46848 * 300.00683 * 12 10 8 16 16 C 1.53002 * 109.47018 * 261.43142 * 6 5 4 17 17 Cl 1.80298 * 109.47130 * 65.73072 * 16 6 5 18 18 C 1.37911 * 120.36684 * 0.27314 * 4 3 2 19 19 C 1.39949 * 119.47631 * 359.45957 * 18 4 3 20 20 C 1.45932 * 133.93839 * 180.20508 * 19 18 4 21 21 N 1.30248 * 107.80623 * 180.30027 * 20 19 18 22 22 N 1.39864 * 110.09336 * 0.02562 * 21 20 19 23 23 H 0.97002 * 125.46962 * 179.97438 * 22 21 20 24 24 C 1.37221 * 109.05832 * 359.97438 * 22 21 20 25 25 H 1.09003 * 109.46758 * 90.00286 * 1 2 3 26 26 H 1.09006 * 109.46941 * 209.99779 * 1 2 3 27 27 H 1.08999 * 109.47285 * 330.00133 * 1 2 3 28 28 H 1.07999 * 119.61180 * 0.03835 * 3 2 1 29 29 H 0.97003 * 119.99411 * 6.34782 * 11 10 8 30 30 H 1.09007 * 109.47269 * 185.72930 * 16 6 5 31 31 H 1.09008 * 109.47061 * 305.72818 * 16 6 5 32 32 H 1.08007 * 120.26033 * 179.70222 * 18 4 3 33 33 H 1.08002 * 126.10080 * 0.29876 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1831 0.0000 4 6 3.5825 1.2027 -0.0005 5 8 4.2420 2.3919 -0.0011 6 6 5.6645 2.3447 -0.1276 7 1 5.9582 1.3958 -0.5762 8 6 6.1287 3.4796 -1.0038 9 1 6.4236 4.4190 -0.5598 10 6 6.1770 3.3186 -2.3723 11 7 5.8762 2.1562 -2.9088 12 14 6.6698 4.7518 -3.4646 13 1 8.0404 5.1980 -3.1072 14 1 6.6432 4.3229 -4.8860 15 1 5.7170 5.8739 -3.2686 16 6 6.3042 2.4743 1.2562 17 17 5.8843 1.0298 2.2501 18 6 4.2963 0.0227 -0.0067 19 6 3.6104 -1.1971 -0.0010 20 6 4.0301 -2.5948 -0.0010 21 7 2.9569 -3.3329 -0.0005 22 7 1.8167 -2.5229 -0.0007 23 1 0.9003 -2.8410 -0.0008 24 6 2.2025 -1.2061 -0.0009 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6421 2.1143 0.0006 29 1 5.5322 1.4399 -2.3525 30 1 7.3872 2.5407 1.1511 31 1 5.9309 3.3736 1.7463 32 1 5.3762 0.0400 -0.0120 33 1 5.0489 -2.9533 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230910582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:30 Heat of formation + Delta-G solvation = 25.910017 kcal Electronic energy + Delta-G solvation = -19637.623745 eV Core-core repulsion = 16497.434532 eV Total energy + Delta-G solvation = -3140.189213 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87436 -38.59411 -36.13520 -35.13947 -33.38688 -32.50193 -30.21897 -30.15429 -28.26670 -26.47115 -24.80250 -22.74992 -21.91019 -21.04308 -20.40016 -17.81766 -17.20489 -16.64742 -15.76117 -14.88392 -14.70647 -14.27051 -14.03058 -13.85323 -13.71198 -13.38270 -13.13008 -12.92864 -12.55019 -12.18063 -11.87053 -11.81314 -11.49901 -10.99214 -10.88741 -10.65390 -10.43958 -10.25444 -10.25072 -9.88490 -9.64396 -9.27635 -8.94094 -8.63651 -8.09524 -6.83945 -6.74148 -4.58812 1.30491 2.12689 2.82711 2.94535 3.02806 3.27843 3.32721 3.50246 4.15991 4.29013 4.38194 4.94721 4.98520 5.08676 5.18097 5.37923 5.56036 5.66585 5.70642 5.76860 5.79202 5.85432 5.97794 6.17830 6.25198 6.40052 6.54891 6.73009 6.85614 6.91660 7.22710 7.58706 7.62174 7.88711 8.02072 8.41747 8.61620 9.20964 10.62571 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.006236 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.891266 B = 4489.124736 C = 5017.198019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.086 4.086 3 C -0.103 4.103 4 C 0.125 3.875 5 O -0.315 6.315 6 C 0.175 3.825 7 H 0.058 0.942 8 C -0.598 4.598 9 H 0.064 0.936 10 C 0.036 3.964 11 N -0.877 5.877 12 Si 1.075 2.925 13 H -0.283 1.283 14 H -0.279 1.279 15 H -0.282 1.282 16 C -0.029 4.029 17 Cl -0.217 7.217 18 C -0.140 4.140 19 C -0.133 4.133 20 C 0.067 3.933 21 N -0.259 5.259 22 N -0.517 5.517 23 H 0.432 0.568 24 C 0.083 3.917 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.130 0.870 29 H 0.276 0.724 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 -3.907 5.510 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.124 4.124 4 C 0.077 3.923 5 O -0.229 6.229 6 C 0.121 3.879 7 H 0.075 0.925 8 C -0.635 4.635 9 H 0.082 0.918 10 C -0.174 4.174 11 N -0.510 5.510 12 Si 0.901 3.099 13 H -0.209 1.209 14 H -0.204 1.204 15 H -0.208 1.208 16 C -0.092 4.092 17 Cl -0.191 7.191 18 C -0.161 4.161 19 C -0.141 4.141 20 C -0.131 4.131 21 N -0.073 5.073 22 N -0.234 5.234 23 H 0.275 0.725 24 C -0.030 4.030 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.154 0.846 33 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.574 -4.592 4.051 8.281 hybrid contribution -0.355 0.032 1.712 1.749 sum -5.930 -4.561 5.763 9.443 Atomic orbital electron populations 1.20645 0.91183 1.02283 1.02035 1.18227 0.95128 0.89415 1.06224 1.19951 0.91911 0.97209 1.03354 1.18851 0.91463 0.86581 0.95398 1.86612 1.24608 1.25793 1.85896 1.20722 0.76389 1.00596 0.90187 0.92465 1.21880 1.47802 1.00543 0.93269 0.91822 1.26148 0.93453 1.01233 0.96534 1.70797 1.37065 1.02741 1.40439 0.83460 0.76564 0.73889 0.75988 1.20904 1.20359 1.20839 1.25264 1.02568 0.87558 0.93769 1.98678 1.95262 1.49468 1.75732 1.20733 1.00423 0.89784 1.05174 1.19582 0.91842 0.93509 1.09160 1.24966 0.97919 0.89958 1.00211 1.76388 0.92505 1.19591 1.18804 1.45666 1.07031 1.01571 1.69166 0.72465 1.18389 0.93995 0.85724 1.04847 0.91414 0.92617 0.91157 0.85203 0.91270 0.88435 0.89484 0.84650 0.79216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.09 -1.41 5.86 -104.86 -0.61 -2.02 16 3 C -0.10 -1.92 9.53 -39.77 -0.38 -2.30 16 4 C 0.13 2.66 6.24 -39.28 -0.25 2.42 16 5 O -0.32 -7.44 9.69 -19.68 -0.19 -7.63 16 6 C 0.17 4.06 1.89 -27.88 -0.05 4.01 16 7 H 0.06 1.41 3.94 -51.93 -0.20 1.20 16 8 C -0.60 -15.32 8.69 -34.44 -0.30 -15.62 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.04 0.94 5.46 -17.82 -0.10 0.85 16 11 N -0.88 -24.61 13.61 55.43 0.75 -23.86 16 12 Si 1.08 23.06 29.90 -169.99 -5.08 17.98 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 16 C -0.03 -0.56 6.31 37.16 0.23 -0.33 16 17 Cl -0.22 -4.01 25.75 -51.86 -1.34 -5.35 16 18 C -0.14 -2.85 7.28 -39.06 -0.28 -3.13 16 19 C -0.13 -2.50 6.36 -105.21 -0.67 -3.17 16 20 C 0.07 1.10 12.28 -15.15 -0.19 0.92 16 21 N -0.26 -4.22 12.55 31.87 0.40 -3.82 16 22 N -0.52 -7.85 7.38 32.38 0.24 -7.61 16 23 H 0.43 5.08 8.89 -182.77 -1.63 3.46 16 24 C 0.08 1.45 6.99 -84.12 -0.59 0.86 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.57 8.02 -51.93 -0.42 0.15 16 27 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 29 H 0.28 7.76 6.66 -40.82 -0.27 7.48 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.14 2.82 4.80 -52.48 -0.25 2.57 16 33 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -29.44 295.84 -8.09 -37.52 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.51 Total: 6.72 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.82 Total: -18.42 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 1.39 Total: -35.29 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.19 Total: -7.63 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.08 Total: 17.98 kcal Atomic # 17 Polarization: -4.01 SS G_CDS: -1.34 Total: -5.35 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.44 -8.09 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230910582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.432 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds