Wall clock time and date at job start Tue Mar 31 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36558 * 119.96257 * 2 1 4 4 C 1.39357 * 120.76923 * 180.02562 * 3 2 1 5 5 O 1.35982 * 119.81963 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00264 * 185.68140 * 5 4 3 7 7 H 1.08994 * 109.47637 * 21.43128 * 6 5 4 8 8 C 1.50707 * 109.47023 * 141.43607 * 6 5 4 9 9 H 1.08001 * 120.00293 * 92.81327 * 8 6 5 10 10 C 1.37878 * 119.99440 * 272.80798 * 8 6 5 11 11 N 1.31514 * 120.00533 * 356.91948 * 10 8 6 12 12 Si 1.86805 * 119.99849 * 176.91866 * 10 8 6 13 13 H 1.48505 * 109.46756 * 60.00172 * 12 10 8 14 14 H 1.48496 * 109.47353 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46848 * 300.00683 * 12 10 8 16 16 C 1.53002 * 109.47018 * 261.43142 * 6 5 4 17 17 Cl 1.80298 * 109.47130 * 65.73072 * 16 6 5 18 18 C 1.37911 * 120.36684 * 0.27314 * 4 3 2 19 19 C 1.39949 * 119.47631 * 359.45957 * 18 4 3 20 20 C 1.45932 * 133.93839 * 180.20508 * 19 18 4 21 21 N 1.30248 * 107.80623 * 180.30027 * 20 19 18 22 22 N 1.39864 * 110.09336 * 0.02562 * 21 20 19 23 23 H 0.97002 * 125.46962 * 179.97438 * 22 21 20 24 24 C 1.37221 * 109.05832 * 359.97438 * 22 21 20 25 25 H 1.09003 * 109.46758 * 90.00286 * 1 2 3 26 26 H 1.09006 * 109.46941 * 209.99779 * 1 2 3 27 27 H 1.08999 * 109.47285 * 330.00133 * 1 2 3 28 28 H 1.07999 * 119.61180 * 0.03835 * 3 2 1 29 29 H 0.97003 * 119.99411 * 6.34782 * 11 10 8 30 30 H 1.09007 * 109.47269 * 185.72930 * 16 6 5 31 31 H 1.09008 * 109.47061 * 305.72818 * 16 6 5 32 32 H 1.08007 * 120.26033 * 179.70222 * 18 4 3 33 33 H 1.08002 * 126.10080 * 0.29876 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.1831 0.0000 4 6 3.5825 1.2027 -0.0005 5 8 4.2420 2.3919 -0.0011 6 6 5.6645 2.3447 -0.1276 7 1 5.9582 1.3958 -0.5762 8 6 6.1287 3.4796 -1.0038 9 1 6.4236 4.4190 -0.5598 10 6 6.1770 3.3186 -2.3723 11 7 5.8762 2.1562 -2.9088 12 14 6.6698 4.7518 -3.4646 13 1 8.0404 5.1980 -3.1072 14 1 6.6432 4.3229 -4.8860 15 1 5.7170 5.8739 -3.2686 16 6 6.3042 2.4743 1.2562 17 17 5.8843 1.0298 2.2501 18 6 4.2963 0.0227 -0.0067 19 6 3.6104 -1.1971 -0.0010 20 6 4.0301 -2.5948 -0.0010 21 7 2.9569 -3.3329 -0.0005 22 7 1.8167 -2.5229 -0.0007 23 1 0.9003 -2.8410 -0.0008 24 6 2.2025 -1.2061 -0.0009 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6421 2.1143 0.0006 29 1 5.5322 1.4399 -2.3525 30 1 7.3872 2.5407 1.1511 31 1 5.9309 3.3736 1.7463 32 1 5.3762 0.0400 -0.0120 33 1 5.0489 -2.9533 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230910582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:30 Heat of formation + Delta-G solvation = 8.560691 kcal Electronic energy + Delta-G solvation = -19638.376069 eV Core-core repulsion = 16497.434532 eV Total energy + Delta-G solvation = -3140.941536 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.23926 -40.21088 -37.58389 -36.67687 -35.22703 -33.90798 -31.88904 -31.47521 -29.70145 -27.74749 -26.69356 -24.26444 -23.39275 -22.46262 -21.85461 -19.51883 -18.78919 -18.20256 -17.24703 -16.45103 -16.16165 -15.77256 -15.67021 -15.48514 -15.04723 -14.82831 -14.31783 -14.17240 -14.07927 -13.86124 -13.45211 -13.06929 -12.91740 -12.66817 -12.34433 -12.18995 -11.92640 -11.91489 -11.73603 -11.34076 -11.11075 -11.03036 -10.65274 -10.48818 -9.48783 -8.78847 -8.32307 -6.63472 -0.08606 0.65855 1.36990 1.49865 1.56486 1.63091 1.80066 1.82848 2.45068 2.65822 2.83102 3.30756 3.63678 3.70167 3.81449 4.07636 4.11932 4.16957 4.23356 4.42041 4.51147 4.68085 4.77217 4.79164 4.88390 4.91526 5.13244 5.37900 5.44379 5.46266 5.68489 5.78991 6.00097 6.36624 6.39169 6.62914 6.92960 7.24726 8.58187 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.006236 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.891266 B = 4489.124736 C = 5017.198019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.072 4.072 3 C -0.120 4.120 4 C 0.095 3.905 5 O -0.335 6.335 6 C 0.175 3.825 7 H 0.040 0.960 8 C -0.613 4.613 9 H 0.066 0.934 10 C -0.010 4.010 11 N -0.910 5.910 12 Si 1.118 2.882 13 H -0.261 1.261 14 H -0.285 1.285 15 H -0.271 1.271 16 C -0.022 4.022 17 Cl -0.205 7.205 18 C -0.149 4.149 19 C -0.158 4.158 20 C 0.064 3.936 21 N -0.260 5.260 22 N -0.501 5.501 23 H 0.449 0.551 24 C 0.080 3.920 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.262 0.738 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 -4.205 5.997 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.076 4.076 3 C -0.141 4.141 4 C 0.048 3.952 5 O -0.250 6.250 6 C 0.121 3.879 7 H 0.057 0.943 8 C -0.650 4.650 9 H 0.085 0.915 10 C -0.213 4.213 11 N -0.545 5.545 12 Si 0.939 3.061 13 H -0.185 1.185 14 H -0.211 1.211 15 H -0.196 1.196 16 C -0.085 4.085 17 Cl -0.178 7.178 18 C -0.170 4.170 19 C -0.166 4.166 20 C -0.133 4.133 21 N -0.074 5.074 22 N -0.221 5.221 23 H 0.295 0.705 24 C -0.034 4.034 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.159 0.841 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.812 -4.916 4.569 9.563 hybrid contribution -0.089 -0.008 1.643 1.646 sum -6.901 -4.924 6.212 10.510 Atomic orbital electron populations 1.20766 0.87573 1.04209 1.03457 1.18661 0.97547 0.88132 1.03305 1.20193 0.90988 0.98751 1.04194 1.19158 0.92593 0.85943 0.97468 1.86456 1.24357 1.27322 1.86868 1.20591 0.76593 0.98968 0.91766 0.94285 1.22243 1.47604 1.01217 0.93892 0.91526 1.27495 0.92926 1.02458 0.98423 1.70905 1.39664 1.03517 1.40398 0.82928 0.77700 0.71532 0.73984 1.18517 1.21055 1.19599 1.25046 1.02894 0.88249 0.92331 1.98674 1.95277 1.48832 1.75063 1.20605 0.99778 0.90419 1.06227 1.19867 0.92912 0.94007 1.09776 1.25399 0.99242 0.88862 0.99843 1.76379 0.92722 1.19670 1.18642 1.45688 1.07785 1.00630 1.67996 0.70451 1.18595 0.93715 0.86830 1.04299 0.90034 0.90370 0.89666 0.84083 0.92676 0.87246 0.88769 0.86053 0.76674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 10.01 71.24 0.71 -1.42 16 2 C -0.07 -2.25 5.86 -20.02 -0.12 -2.37 16 3 C -0.12 -4.44 9.53 22.15 0.21 -4.23 16 4 C 0.10 4.15 6.24 22.46 0.14 4.29 16 5 O -0.34 -16.25 9.69 -93.35 -0.90 -17.16 16 6 C 0.17 8.35 1.89 29.85 0.06 8.40 16 7 H 0.04 2.02 3.94 -2.39 -0.01 2.01 16 8 C -0.61 -31.89 8.69 25.60 0.22 -31.66 16 9 H 0.07 3.33 7.81 -2.91 -0.02 3.30 16 10 C -0.01 -0.55 5.46 84.65 0.46 -0.09 16 11 N -0.91 -52.63 13.61 21.45 0.29 -52.34 16 12 Si 1.12 46.47 29.90 68.60 2.05 48.52 16 13 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 14 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 16 C -0.02 -0.88 6.31 71.98 0.45 -0.43 16 17 Cl -0.20 -7.54 25.75 -2.72 -0.07 -7.61 16 18 C -0.15 -6.21 7.28 22.61 0.16 -6.05 16 19 C -0.16 -5.86 6.36 -20.25 -0.13 -5.99 16 20 C 0.06 2.02 12.28 86.92 1.07 3.09 16 21 N -0.26 -7.94 12.55 -53.08 -0.67 -8.61 16 22 N -0.50 -14.00 7.38 -51.48 -0.38 -14.38 16 23 H 0.45 9.10 8.89 -213.47 -1.90 7.21 16 24 C 0.08 2.64 6.99 39.16 0.27 2.92 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.27 8.02 -2.38 -0.02 1.26 16 27 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 28 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 29 H 0.26 15.48 6.66 -92.71 -0.62 14.86 16 30 H 0.11 3.98 8.14 -2.38 -0.02 3.96 16 31 H 0.09 3.54 8.14 -2.38 -0.02 3.52 16 32 H 0.12 5.30 4.80 -2.91 -0.01 5.29 16 33 H 0.22 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -64.25 295.84 3.26 -60.99 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.58 Total: 24.11 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 3.52 Total: -33.53 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -0.75 Total: -75.32 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.90 Total: -17.16 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.05 Total: 48.52 kcal Atomic # 17 Polarization: -7.54 SS G_CDS: -0.07 Total: -7.61 kcal Total: -64.25 3.26 -60.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230910582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.552 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds