Wall clock time and date at job start Tue Mar 31 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35558 * 120.18946 * 2 1 4 4 C 1.40126 * 121.67387 * 179.97438 * 3 2 1 5 5 O 1.35905 * 119.15064 * 180.02562 * 4 3 2 6 6 C 1.42896 * 117.00428 * 1.11609 * 5 4 3 7 7 H 1.09000 * 109.46876 * 24.03542 * 6 5 4 8 8 C 1.50698 * 109.47151 * 144.03891 * 6 5 4 9 9 H 1.08003 * 120.00106 * 25.54396 * 8 6 5 10 10 C 1.37887 * 119.99928 * 205.54226 * 8 6 5 11 11 N 1.31508 * 119.99591 * 185.07534 * 10 8 6 12 12 Si 1.86793 * 119.99825 * 5.07042 * 10 8 6 13 13 H 1.48507 * 109.47159 * 94.52564 * 12 10 8 14 14 H 1.48500 * 109.47367 * 214.52159 * 12 10 8 15 15 H 1.48500 * 109.47465 * 334.52502 * 12 10 8 16 16 C 1.53005 * 109.47061 * 264.03936 * 6 5 4 17 17 Cl 1.80300 * 109.46974 * 63.14139 * 16 6 5 18 18 C 1.36107 * 121.69263 * 0.04285 * 4 3 2 19 19 C 1.41112 * 119.55756 * 359.97438 * 18 4 3 20 20 N 1.32084 * 134.62422 * 179.97438 * 19 18 4 21 21 N 1.39958 * 108.94852 * 179.97438 * 20 19 18 22 22 H 0.96996 * 125.01601 * 179.97438 * 21 20 19 23 23 C 1.33976 * 109.96024 * 0.24664 * 21 20 19 24 24 C 1.38258 * 107.91602 * 359.60654 * 23 21 20 25 25 H 1.09001 * 109.47494 * 90.00135 * 1 2 3 26 26 H 1.09007 * 109.46915 * 209.99818 * 1 2 3 27 27 H 1.08993 * 109.47433 * 329.99284 * 1 2 3 28 28 H 1.08005 * 119.16004 * 359.97438 * 3 2 1 29 29 H 0.97004 * 119.99636 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.47079 * 183.14008 * 16 6 5 31 31 H 1.08999 * 109.46958 * 303.13727 * 16 6 5 32 32 H 1.07999 * 120.22125 * 179.97438 * 18 4 3 33 33 H 1.08001 * 126.04369 * 179.73797 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.1717 0.0000 4 6 3.5894 1.2080 0.0005 5 8 4.2205 2.4117 0.0010 6 6 3.3943 3.5774 0.0258 7 1 2.4257 3.3271 0.4585 8 6 4.0562 4.6445 0.8590 9 1 5.1295 4.6480 0.9787 10 6 3.2913 5.6165 1.4686 11 7 3.8741 6.6041 2.1122 12 14 1.4275 5.5303 1.3799 13 1 0.9054 4.8470 2.5906 14 1 0.8711 6.9053 1.3090 15 1 1.0240 4.7701 0.1697 16 6 3.1975 4.0933 -1.4011 17 17 2.3231 2.8522 -2.3737 18 6 4.3343 0.0688 0.0002 19 6 3.6878 -1.1855 -0.0001 20 7 4.0984 -2.4409 -0.0009 21 7 2.9815 -3.2844 -0.0003 22 1 3.0161 -4.2537 -0.0010 23 6 1.8577 -2.5551 -0.0045 24 6 2.2170 -1.2200 0.0010 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8898 0.5139 28 1 1.6381 2.1009 -0.0004 29 1 3.3361 7.2877 2.5414 30 1 2.6139 5.0137 -1.3774 31 1 4.1694 4.2909 -1.8533 32 1 5.4128 0.1245 0.0002 33 1 0.8492 -2.9417 -0.0091 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233741526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:25 Heat of formation + Delta-G solvation = 43.144897 kcal Electronic energy + Delta-G solvation = -19562.862657 eV Core-core repulsion = 16423.420804 eV Total energy + Delta-G solvation = -3139.441852 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02212 -38.98793 -36.08294 -35.13431 -33.43568 -32.65283 -30.72735 -29.50119 -29.01865 -26.74302 -25.32319 -23.20558 -22.34196 -20.40711 -19.48440 -18.23524 -17.47169 -16.89992 -16.07690 -15.24684 -14.92821 -14.49152 -14.12764 -13.93881 -13.36251 -13.24871 -13.16043 -12.94277 -12.78103 -12.52459 -12.02178 -11.82642 -11.57631 -11.13323 -11.09281 -10.95086 -10.50838 -10.09447 -10.01454 -9.87559 -9.76907 -9.48204 -9.28192 -8.87786 -7.72988 -7.13967 -6.45055 -4.51062 0.93798 2.27288 2.69183 2.86419 2.96625 3.07470 3.11432 3.16021 4.04262 4.07066 4.22407 4.60781 4.85080 4.90450 5.13020 5.29627 5.46773 5.59590 5.70904 5.78382 5.82843 5.86400 5.93438 6.00031 6.03500 6.54896 6.56333 6.76069 6.80798 6.91659 7.08531 7.21166 7.26015 7.85655 7.94514 8.39090 8.70572 9.11299 10.65840 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.005875 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.142846 B = 4765.039512 C = 4868.239087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.003 3.997 3 C -0.195 4.195 4 C 0.203 3.797 5 O -0.296 6.296 6 C 0.176 3.824 7 H 0.052 0.948 8 C -0.525 4.525 9 H 0.092 0.908 10 C 0.086 3.914 11 N -0.871 5.871 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.255 1.255 16 C -0.040 4.040 17 Cl -0.227 7.227 18 C -0.198 4.198 19 C 0.151 3.849 20 N -0.326 5.326 21 N -0.440 5.440 22 H 0.438 0.562 23 C 0.081 3.919 24 C -0.221 4.221 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.273 0.727 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 -13.825 -4.721 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.001 3.999 3 C -0.215 4.215 4 C 0.151 3.849 5 O -0.207 6.207 6 C 0.120 3.880 7 H 0.069 0.931 8 C -0.562 4.562 9 H 0.110 0.890 10 C -0.120 4.120 11 N -0.506 5.506 12 Si 0.682 3.318 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.179 1.179 16 C -0.103 4.103 17 Cl -0.201 7.201 18 C -0.221 4.221 19 C -0.002 4.002 20 N -0.156 5.156 21 N -0.140 5.140 22 H 0.281 0.719 23 C -0.076 4.076 24 C -0.231 4.231 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.148 0.852 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.423 -14.407 -4.677 16.868 hybrid contribution -1.907 0.191 -0.058 1.917 sum -9.330 -14.216 -4.735 17.651 Atomic orbital electron populations 1.20795 0.91386 1.02612 1.02279 1.18733 0.94807 0.90324 0.96070 1.20945 0.93885 0.98744 1.07895 1.18424 0.90185 0.86458 0.89814 1.86256 1.36887 1.11757 1.85789 1.20879 0.92903 0.82899 0.91285 0.93069 1.20737 0.96993 1.08369 1.30082 0.89007 1.24903 0.98668 0.94620 0.93849 1.69841 1.36338 1.11642 1.32786 0.87139 0.85773 0.78780 0.80117 1.19178 1.20139 1.17879 1.26053 0.98467 0.92062 0.93734 1.98670 1.81289 1.63060 1.77042 1.18539 0.99405 0.86310 1.17873 1.20423 0.91816 0.91887 0.96123 1.77669 1.04814 0.99900 1.33182 1.46182 1.03979 1.09602 1.54242 0.71901 1.22494 0.92496 0.91430 1.01144 1.19424 0.93869 0.92396 1.17434 0.91003 0.91791 0.91268 0.84730 0.91664 0.88623 0.88587 0.85217 0.80286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.96 36.01 0.36 -0.99 16 2 C 0.00 0.05 5.89 -104.47 -0.62 -0.57 16 3 C -0.20 -3.63 6.60 -39.83 -0.26 -3.90 16 4 C 0.20 4.16 5.99 -39.64 -0.24 3.93 16 5 O -0.30 -6.72 9.65 -19.44 -0.19 -6.91 16 6 C 0.18 3.98 1.70 -27.88 -0.05 3.94 16 7 H 0.05 1.15 2.87 -51.93 -0.15 1.00 16 8 C -0.52 -13.81 9.24 -34.44 -0.32 -14.13 16 9 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 10 C 0.09 2.25 5.47 -17.82 -0.10 2.16 16 11 N -0.87 -24.41 13.96 55.43 0.77 -23.63 16 12 Si 0.86 18.92 26.38 -169.99 -4.48 14.43 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.25 -5.21 5.97 56.52 0.34 -4.87 16 16 C -0.04 -0.81 5.95 37.16 0.22 -0.59 16 17 Cl -0.23 -4.19 25.61 -51.86 -1.33 -5.52 16 18 C -0.20 -3.91 9.98 -39.26 -0.39 -4.30 16 19 C 0.15 2.74 7.49 -83.06 -0.62 2.12 16 20 N -0.33 -5.41 12.70 33.25 0.42 -4.99 16 21 N -0.44 -5.07 7.18 30.84 0.22 -4.85 16 22 H 0.44 3.09 8.96 -182.71 -1.64 1.46 16 23 C 0.08 0.90 11.79 -16.61 -0.20 0.71 16 24 C -0.22 -3.45 6.12 -105.18 -0.64 -4.09 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.59 7.93 -51.92 -0.41 0.18 16 27 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.14 2.57 4.87 -52.48 -0.26 2.31 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.10 1.87 6.90 -51.93 -0.36 1.51 16 31 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 33 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -30.71 290.22 -7.61 -38.32 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.55 Total: 4.49 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.85 Total: -15.71 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 1.42 Total: -33.47 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.19 Total: -6.91 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.48 Total: 14.43 kcal Atomic # 17 Polarization: -4.19 SS G_CDS: -1.33 Total: -5.52 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.71 -7.61 -38.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233741526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.465 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds