Wall clock time and date at job start Tue Mar 31 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35558 * 120.18946 * 2 1 4 4 C 1.40126 * 121.67387 * 179.97438 * 3 2 1 5 5 O 1.35905 * 119.15064 * 180.02562 * 4 3 2 6 6 C 1.42896 * 117.00428 * 1.11609 * 5 4 3 7 7 H 1.09000 * 109.46876 * 24.03542 * 6 5 4 8 8 C 1.50698 * 109.47151 * 144.03891 * 6 5 4 9 9 H 1.08003 * 120.00106 * 25.54396 * 8 6 5 10 10 C 1.37887 * 119.99928 * 205.54226 * 8 6 5 11 11 N 1.31508 * 119.99591 * 185.07534 * 10 8 6 12 12 Si 1.86793 * 119.99825 * 5.07042 * 10 8 6 13 13 H 1.48507 * 109.47159 * 94.52564 * 12 10 8 14 14 H 1.48500 * 109.47367 * 214.52159 * 12 10 8 15 15 H 1.48500 * 109.47465 * 334.52502 * 12 10 8 16 16 C 1.53005 * 109.47061 * 264.03936 * 6 5 4 17 17 Cl 1.80300 * 109.46974 * 63.14139 * 16 6 5 18 18 C 1.36107 * 121.69263 * 0.04285 * 4 3 2 19 19 C 1.41112 * 119.55756 * 359.97438 * 18 4 3 20 20 N 1.32084 * 134.62422 * 179.97438 * 19 18 4 21 21 N 1.39958 * 108.94852 * 179.97438 * 20 19 18 22 22 H 0.96996 * 125.01601 * 179.97438 * 21 20 19 23 23 C 1.33976 * 109.96024 * 0.24664 * 21 20 19 24 24 C 1.38258 * 107.91602 * 359.60654 * 23 21 20 25 25 H 1.09001 * 109.47494 * 90.00135 * 1 2 3 26 26 H 1.09007 * 109.46915 * 209.99818 * 1 2 3 27 27 H 1.08993 * 109.47433 * 329.99284 * 1 2 3 28 28 H 1.08005 * 119.16004 * 359.97438 * 3 2 1 29 29 H 0.97004 * 119.99636 * 180.02562 * 11 10 8 30 30 H 1.09005 * 109.47079 * 183.14008 * 16 6 5 31 31 H 1.08999 * 109.46958 * 303.13727 * 16 6 5 32 32 H 1.07999 * 120.22125 * 179.97438 * 18 4 3 33 33 H 1.08001 * 126.04369 * 179.73797 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.1717 0.0000 4 6 3.5894 1.2080 0.0005 5 8 4.2205 2.4117 0.0010 6 6 3.3943 3.5774 0.0258 7 1 2.4257 3.3271 0.4585 8 6 4.0562 4.6445 0.8590 9 1 5.1295 4.6480 0.9787 10 6 3.2913 5.6165 1.4686 11 7 3.8741 6.6041 2.1122 12 14 1.4275 5.5303 1.3799 13 1 0.9054 4.8470 2.5906 14 1 0.8711 6.9053 1.3090 15 1 1.0240 4.7701 0.1697 16 6 3.1975 4.0933 -1.4011 17 17 2.3231 2.8522 -2.3737 18 6 4.3343 0.0688 0.0002 19 6 3.6878 -1.1855 -0.0001 20 7 4.0984 -2.4409 -0.0009 21 7 2.9815 -3.2844 -0.0003 22 1 3.0161 -4.2537 -0.0010 23 6 1.8577 -2.5551 -0.0045 24 6 2.2170 -1.2200 0.0010 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8898 0.5139 28 1 1.6381 2.1009 -0.0004 29 1 3.3361 7.2877 2.5414 30 1 2.6139 5.0137 -1.3774 31 1 4.1694 4.2909 -1.8533 32 1 5.4128 0.1245 0.0002 33 1 0.8492 -2.9417 -0.0091 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233741526.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:25 Heat of formation + Delta-G solvation = 22.245223 kcal Electronic energy + Delta-G solvation = -19563.768935 eV Core-core repulsion = 16423.420804 eV Total energy + Delta-G solvation = -3140.348130 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18871 -40.51242 -37.42897 -36.66735 -35.25186 -34.01116 -32.37308 -30.86333 -30.13287 -27.90000 -27.21308 -24.43381 -23.81440 -21.87280 -20.70921 -19.62565 -18.95320 -18.52933 -17.41831 -16.90617 -16.35670 -15.79921 -15.58576 -15.31972 -14.91079 -14.75660 -14.61136 -14.13874 -14.06428 -13.84835 -13.40340 -13.22617 -12.88967 -12.85946 -12.68997 -12.30876 -11.91332 -11.84006 -11.47864 -11.26897 -11.13385 -11.02593 -10.87702 -10.73868 -9.04757 -8.47373 -8.45346 -6.60749 -0.20708 0.94734 1.27839 1.33501 1.41535 1.42816 1.53876 1.92040 2.21066 2.54599 2.86788 2.93232 3.47814 3.82766 3.96715 4.05282 4.17887 4.31401 4.34762 4.42556 4.44550 4.66671 4.78402 4.90891 4.92292 5.07520 5.21008 5.22099 5.47556 5.53260 5.69787 5.82137 6.01371 6.41323 6.49196 6.69787 6.79462 7.08022 8.68302 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.005875 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.142846 B = 4765.039512 C = 4868.239087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.034 3.966 3 C -0.239 4.239 4 C 0.188 3.812 5 O -0.325 6.325 6 C 0.184 3.816 7 H 0.060 0.940 8 C -0.541 4.541 9 H 0.040 0.960 10 C 0.036 3.964 11 N -0.921 5.921 12 Si 0.922 3.078 13 H -0.261 1.261 14 H -0.268 1.268 15 H -0.227 1.227 16 C -0.037 4.037 17 Cl -0.203 7.203 18 C -0.225 4.225 19 C 0.127 3.873 20 N -0.364 5.364 21 N -0.418 5.418 22 H 0.460 0.540 23 C 0.135 3.865 24 C -0.258 4.258 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.278 0.722 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.093 -17.037 -5.574 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.032 3.968 3 C -0.259 4.259 4 C 0.137 3.863 5 O -0.237 6.237 6 C 0.128 3.872 7 H 0.078 0.922 8 C -0.578 4.578 9 H 0.058 0.942 10 C -0.166 4.166 11 N -0.558 5.558 12 Si 0.742 3.258 13 H -0.186 1.186 14 H -0.192 1.192 15 H -0.150 1.150 16 C -0.100 4.100 17 Cl -0.176 7.176 18 C -0.248 4.248 19 C -0.026 4.026 20 N -0.195 5.195 21 N -0.120 5.120 22 H 0.308 0.692 23 C -0.024 4.024 24 C -0.267 4.267 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.878 -17.674 -5.547 22.005 hybrid contribution -0.478 0.861 0.193 1.004 sum -12.356 -16.813 -5.353 21.541 Atomic orbital electron populations 1.20960 0.87866 1.04506 1.03867 1.19208 0.97070 0.89340 0.91232 1.20803 0.92597 0.99738 1.12739 1.18643 0.91556 0.85255 0.90817 1.86173 1.37967 1.12838 1.86754 1.20657 0.92522 0.81938 0.92069 0.92216 1.20844 0.94982 1.10267 1.31730 0.94151 1.25768 1.04229 0.93654 0.92934 1.69980 1.38703 1.12827 1.34299 0.86114 0.78751 0.79554 0.81381 1.18576 1.19232 1.14978 1.25658 0.99045 0.92511 0.92824 1.98663 1.80611 1.62255 1.76109 1.18553 0.98770 0.87708 1.19759 1.20416 0.93710 0.91635 0.96797 1.77612 1.07193 0.99874 1.34830 1.46275 1.03231 1.10661 1.51824 0.69208 1.23420 0.94456 0.89327 0.95194 1.19776 0.92433 0.94439 1.20091 0.89239 0.88153 0.91255 0.85469 0.91274 0.87650 0.88892 0.87113 0.73801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.96 71.24 0.71 -1.40 16 2 C 0.03 0.97 5.89 -19.77 -0.12 0.86 16 3 C -0.24 -8.75 6.60 22.11 0.15 -8.60 16 4 C 0.19 8.02 5.99 22.23 0.13 8.15 16 5 O -0.32 -15.76 9.65 -92.48 -0.89 -16.66 16 6 C 0.18 8.61 1.70 29.85 0.05 8.66 16 7 H 0.06 2.69 2.87 -2.39 -0.01 2.68 16 8 C -0.54 -30.27 9.24 25.60 0.24 -30.03 16 9 H 0.04 2.59 8.06 -2.91 -0.02 2.56 16 10 C 0.04 1.95 5.47 84.66 0.46 2.42 16 11 N -0.92 -53.99 13.96 21.45 0.30 -53.69 16 12 Si 0.92 38.89 26.38 68.60 1.81 40.70 16 13 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 15 H -0.23 -8.49 5.97 99.48 0.59 -7.90 16 16 C -0.04 -1.52 5.95 71.98 0.43 -1.09 16 17 Cl -0.20 -7.28 25.61 -2.72 -0.07 -7.35 16 18 C -0.22 -9.37 9.98 22.48 0.22 -9.15 16 19 C 0.13 4.56 7.49 42.15 0.32 4.88 16 20 N -0.36 -11.61 12.70 -48.72 -0.62 -12.22 16 21 N -0.42 -7.76 7.18 -56.34 -0.40 -8.17 16 22 H 0.46 4.15 8.96 -213.42 -1.91 2.24 16 23 C 0.14 2.18 11.79 84.37 0.99 3.17 16 24 C -0.26 -7.14 6.12 -20.22 -0.12 -7.26 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.10 1.11 7.93 -2.38 -0.02 1.10 16 27 H 0.07 1.31 8.08 -2.39 -0.02 1.30 16 28 H 0.13 4.72 4.87 -2.91 -0.01 4.70 16 29 H 0.28 14.94 8.31 -92.71 -0.77 14.16 16 30 H 0.11 4.04 6.90 -2.38 -0.02 4.02 16 31 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 32 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 33 H 0.25 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -74.28 290.22 2.72 -71.56 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.86 Total: 15.21 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 3.46 Total: -29.39 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -0.72 Total: -74.08 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.89 Total: -16.66 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.81 Total: 40.70 kcal Atomic # 17 Polarization: -7.28 SS G_CDS: -0.07 Total: -7.35 kcal Total: -74.28 2.72 -71.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233741526.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.806 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds