Wall clock time and date at job start Tue Mar 31 2020 01:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.35187 * 123.12955 * 260.26068 * 3 2 1 5 5 S 1.70939 * 108.83449 * 179.97438 * 4 3 2 6 6 C 1.70774 * 91.12949 * 0.28329 * 5 4 3 7 7 C 1.50696 * 124.72969 * 179.87105 * 6 5 4 8 8 N 1.46493 * 109.47181 * 269.95775 * 7 6 5 9 9 C 1.34774 * 120.00367 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00027 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00385 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00095 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47055 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.47086 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99889 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99801 * 179.97438 * 14 13 12 17 17 N 1.31504 * 120.00326 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47120 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47048 * 119.99817 * 18 16 14 21 21 H 1.48495 * 109.47360 * 240.00338 * 18 16 14 22 22 N 1.28714 * 110.54467 * 359.83268 * 6 5 4 23 23 H 1.08000 * 125.58347 * 0.03170 * 4 3 2 24 24 H 1.08998 * 109.47343 * 29.96329 * 7 6 5 25 25 H 1.09009 * 109.47228 * 149.95759 * 7 6 5 26 26 H 0.97000 * 119.99920 * 0.02562 * 8 7 6 27 27 H 0.96995 * 120.00228 * 359.97438 * 11 9 8 28 28 H 1.08995 * 109.47158 * 299.99767 * 12 11 9 29 29 H 1.08999 * 109.47136 * 60.00214 * 12 11 9 30 30 H 1.09004 * 109.46709 * 300.00007 * 13 12 11 31 31 H 1.08996 * 109.46985 * 59.99578 * 13 12 11 32 32 H 0.97004 * 120.00727 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3067 0.1925 1.1158 5 16 4.9632 0.1211 0.6999 6 6 4.5744 -0.1523 -0.9403 7 6 5.5849 -0.3348 -2.0433 8 7 5.9101 0.9683 -2.6281 9 6 6.7979 1.0508 -3.6389 10 8 7.3292 0.0435 -4.0650 11 7 7.0975 2.2497 -4.1766 12 6 8.0629 2.3393 -5.2749 13 6 8.2209 3.8015 -5.6970 14 6 9.2135 3.8936 -6.8272 15 1 9.6842 2.9988 -7.2067 16 6 9.5199 5.1202 -7.3773 17 7 8.9456 6.2097 -6.9161 18 14 10.7508 5.2345 -8.7777 19 1 11.2499 3.8759 -9.1102 20 1 10.0907 5.8243 -9.9701 21 1 11.8899 6.0939 -8.3667 22 7 3.2979 -0.1816 -1.1031 23 1 2.9146 0.3621 2.1077 24 1 6.4895 -0.7864 -1.6362 25 1 5.1691 -0.9850 -2.8131 26 1 5.4866 1.7719 -2.2879 27 1 6.6740 3.0533 -3.8364 28 1 9.0262 1.9509 -4.9445 29 1 7.7056 1.7530 -6.1214 30 1 7.2576 4.1904 -6.0272 31 1 8.5783 4.3875 -4.8503 32 1 9.1614 7.0727 -7.3029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234046289.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:48 Heat of formation + Delta-G solvation = 40.514957 kcal Electronic energy + Delta-G solvation = -17627.658703 eV Core-core repulsion = 14522.439265 eV Total energy + Delta-G solvation = -3105.219438 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70228 -39.58676 -36.89320 -35.40495 -34.56291 -32.87644 -31.63630 -29.66032 -27.81613 -25.77194 -24.47467 -21.59072 -21.08305 -20.66106 -19.83999 -18.20641 -17.62094 -16.56396 -16.21641 -15.65662 -15.40475 -15.05969 -14.52633 -14.27361 -13.99284 -13.82318 -13.61136 -13.38768 -13.31350 -13.08850 -12.60362 -12.29066 -12.25982 -11.19193 -11.05555 -10.62271 -10.44502 -10.36292 -10.33837 -10.05963 -9.62644 -9.48415 -9.25179 -9.21274 -8.51327 -8.30376 -6.09858 -4.12425 -0.19058 0.56990 0.96886 1.32348 2.07527 2.87194 3.05723 3.17840 3.28514 3.36361 3.41619 3.48975 3.84326 4.38395 4.41961 4.49998 4.61919 4.91753 5.25251 5.27578 5.39786 6.24718 6.32660 6.37979 6.75681 6.80672 6.93879 6.98073 7.10360 7.55163 7.62211 7.89329 8.22683 8.34764 8.86777 8.94776 9.52559 11.01847 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.033522 B = 0.002564 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.077367 B =10918.256107 C =11194.345865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C 0.288 3.712 3 C 0.124 3.876 4 C -0.241 4.241 5 S 0.275 5.725 6 C 0.012 3.988 7 C 0.219 3.781 8 N -0.751 5.751 9 C 0.703 3.297 10 O -0.594 6.594 11 N -0.735 5.735 12 C 0.140 3.860 13 C 0.012 3.988 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 N -0.419 5.419 23 H 0.193 0.807 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.397 0.603 27 H 0.394 0.606 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.493 -10.870 19.851 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.031 4.031 3 C -0.013 4.013 4 C -0.386 4.386 5 S 0.533 5.467 6 C -0.268 4.268 7 C 0.092 3.908 8 N -0.410 5.410 9 C 0.403 3.597 10 O -0.472 6.472 11 N -0.389 5.389 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.134 5.134 23 H 0.210 0.790 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.231 0.769 27 H 0.227 0.773 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.967 -11.632 19.371 24.309 hybrid contribution -0.521 1.004 -0.422 1.207 sum -9.488 -10.628 18.949 23.708 Atomic orbital electron populations 1.81293 1.11136 1.07911 1.06305 1.24160 0.90665 0.94060 0.94191 1.15605 0.87801 1.09242 0.88646 1.26731 0.99415 1.07811 1.04681 1.83228 1.01613 1.59583 1.02275 1.27148 0.93986 1.05718 0.99934 1.19517 0.93571 0.86540 0.91214 1.45026 1.48079 1.08795 1.39076 1.15938 0.79590 0.84786 0.79418 1.90914 1.56623 1.34995 1.64707 1.45532 1.47647 1.06576 1.39098 1.21630 0.89600 1.01016 0.86044 1.19338 0.97781 0.88526 0.96898 1.21087 1.24324 0.93290 1.17161 0.92124 1.24996 0.96401 0.95729 0.97209 1.69958 1.43044 0.98224 1.42131 0.86459 0.80965 0.78245 0.81917 1.19548 1.20962 1.20955 1.66909 1.04158 1.13560 1.28793 0.78994 0.88789 0.88201 0.76944 0.77271 0.92608 0.92639 0.95951 0.95938 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.65 18.54 41.83 0.78 -3.87 16 2 C 0.29 2.86 15.75 -22.47 -0.35 2.50 16 3 C 0.12 1.00 6.55 -86.29 -0.57 0.44 16 4 C -0.24 -1.15 10.89 29.65 0.32 -0.82 16 5 S 0.28 1.19 22.92 -107.50 -2.46 -1.28 16 6 C 0.01 0.09 6.71 -13.59 -0.09 0.00 16 7 C 0.22 2.01 6.24 -5.20 -0.03 1.97 16 8 N -0.75 -8.29 5.55 -66.42 -0.37 -8.66 16 9 C 0.70 11.22 8.57 -86.92 -0.74 10.48 16 10 O -0.59 -11.77 16.34 5.28 0.09 -11.69 16 11 N -0.74 -12.20 5.56 -65.22 -0.36 -12.56 16 12 C 0.14 2.89 5.61 -4.04 -0.02 2.86 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 14 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.87 13.28 55.43 0.74 -25.13 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 N -0.42 -3.98 10.67 -9.65 -0.10 -4.09 16 23 H 0.19 0.36 8.06 -52.49 -0.42 -0.06 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 26 H 0.40 3.50 8.48 -40.82 -0.35 3.16 16 27 H 0.39 5.58 8.49 -40.82 -0.35 5.23 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -33.82 313.63 -7.23 -41.05 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -3.19 Total: 0.77 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -2.04 Total: 4.59 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.68 Total: -54.31 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.46 Total: -1.28 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.82 -7.23 -41.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234046289.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.561 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds