Wall clock time and date at job start Tue Mar 31 2020 01:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46890 * 111.00347 * 2 1 4 4 C 1.50700 * 109.47122 * 293.95049 * 3 2 1 5 5 H 1.08001 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00091 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00145 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99984 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47428 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47279 * 119.99719 * 8 6 4 11 11 H 1.48498 * 109.47371 * 239.99727 * 8 6 4 12 12 C 1.46908 * 110.99334 * 123.95219 * 2 1 3 13 13 C 1.50700 * 109.47148 * 66.04654 * 12 2 1 14 14 C 1.33644 * 126.03938 * 90.00134 * 13 12 2 15 15 N 1.31771 * 114.50041 * 180.02562 * 14 13 12 16 16 C 1.29028 * 117.12878 * 359.97438 * 15 14 13 17 17 C 1.50701 * 124.91855 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.46912 * 5.00165 * 17 16 15 19 19 F 1.39904 * 109.47073 * 124.99784 * 17 16 15 20 20 F 1.39900 * 109.46972 * 244.99973 * 17 16 15 21 21 S 1.70979 * 110.16576 * 359.97438 * 16 15 14 22 22 H 1.08995 * 109.47315 * 296.05100 * 1 2 3 23 23 H 1.09002 * 109.46406 * 56.05056 * 1 2 3 24 24 H 1.08999 * 109.47077 * 176.04515 * 1 2 3 25 25 H 1.09000 * 109.47308 * 53.95102 * 3 2 1 26 26 H 1.09006 * 109.47566 * 173.94954 * 3 2 1 27 27 H 0.97001 * 119.99664 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47370 * 306.04334 * 12 2 1 29 29 H 1.09005 * 109.46596 * 186.04461 * 12 2 1 30 30 H 1.08002 * 122.74545 * 359.72316 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6371 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0279 3.3489 -1.5290 7 7 2.7131 4.0014 -0.6154 8 14 1.5842 4.1862 -3.1388 9 1 0.8159 3.2441 -3.9915 10 1 0.7572 5.3879 -2.8603 11 1 2.8262 4.5927 -3.8441 12 6 1.9953 -0.7660 1.1377 13 6 1.6367 -2.2204 0.9730 14 6 2.3717 -3.1456 0.3485 15 7 1.8393 -4.3510 0.3383 16 6 0.6964 -4.4944 0.9198 17 6 -0.0675 -5.7900 1.0129 18 9 0.7038 -6.8258 0.4751 19 9 -0.3519 -6.0683 2.3541 20 9 -1.2637 -5.6786 0.2959 21 16 0.1748 -3.0018 1.5706 22 1 -0.3634 0.4513 0.9232 23 1 -0.3632 0.5739 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5611 1.9273 0.8309 26 1 3.0798 1.3443 0.1083 27 1 2.9877 4.9175 -0.7775 28 1 1.5610 -0.3872 2.0629 29 1 3.0796 -0.6612 1.1758 30 1 3.3217 -2.9225 -0.1142 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237947372.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:03 Heat of formation + Delta-G solvation = -95.409006 kcal Electronic energy + Delta-G solvation = -19175.691298 eV Core-core repulsion = 15490.428263 eV Total energy + Delta-G solvation = -3685.263034 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.40119 -47.95514 -47.86038 -39.96358 -36.89410 -32.93123 -31.63351 -28.81862 -27.24542 -25.99338 -24.34975 -23.25038 -20.93289 -20.26225 -19.26506 -18.81587 -17.81287 -17.23528 -16.46073 -15.39746 -15.02443 -14.84506 -14.67416 -14.59810 -14.32386 -14.25460 -14.03675 -14.01839 -13.86637 -13.71804 -12.89520 -12.50897 -12.13543 -12.02284 -11.44734 -11.13527 -11.05713 -10.77400 -10.65232 -10.07133 -10.03297 -9.49897 -9.35949 -9.17567 -8.54492 -7.52871 -6.13625 -4.15538 0.21356 0.84286 1.39138 2.21081 2.51347 3.24000 3.25261 3.33321 3.37951 3.90596 4.05320 4.33778 4.58717 4.78174 4.90962 5.15895 5.23593 5.74362 5.77175 5.91778 5.96016 6.11388 6.56105 7.05271 7.12930 7.30231 7.63174 7.85492 7.98568 8.34384 8.91703 9.49475 10.97206 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.039478 B = 0.003627 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.078295 B = 7717.775252 C = 7844.652357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.533 5.533 3 C 0.193 3.807 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.118 3.882 13 C -0.153 4.153 14 C 0.037 3.963 15 N -0.410 5.410 16 C -0.103 4.103 17 C 0.556 3.444 18 F -0.157 7.157 19 F -0.167 7.167 20 F -0.166 7.166 21 S 0.211 5.789 22 H 0.016 0.984 23 H 0.082 0.918 24 H 0.044 0.956 25 H -0.005 1.005 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -16.021 6.357 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.258 5.258 3 C 0.069 3.931 4 C -0.549 4.549 5 H 0.083 0.917 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.013 4.013 13 C -0.276 4.276 14 C -0.115 4.115 15 N -0.125 5.125 16 C -0.379 4.379 17 C 0.498 3.502 18 F -0.138 7.138 19 F -0.149 7.149 20 F -0.147 7.147 21 S 0.464 5.536 22 H 0.035 0.965 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.013 0.987 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.373 -16.294 6.273 18.268 hybrid contribution 0.293 0.906 -0.542 1.096 sum -5.080 -15.387 5.731 17.188 Atomic orbital electron populations 1.22375 0.88594 0.99739 1.01301 1.62232 1.07359 1.18224 1.37993 1.19801 0.95611 0.80535 0.97175 1.21149 1.35152 0.96977 1.01575 0.91682 1.24978 0.95135 0.97282 0.97084 1.69959 1.38171 1.11514 1.34044 0.86423 0.78237 0.79312 0.83361 1.19613 1.21049 1.20911 1.20659 1.01704 0.84657 0.94230 1.26658 0.96145 1.02544 1.02222 1.21770 1.02971 0.85027 1.01720 1.66000 1.07190 1.25122 1.14228 1.26501 1.00109 0.99483 1.11822 1.16937 0.76921 0.82186 0.74163 1.93245 1.74894 1.59757 1.85887 1.93246 1.93740 1.94223 1.33673 1.93260 1.47170 1.96083 1.78173 1.84029 1.20561 0.98534 1.50479 0.96546 0.89909 0.93778 0.98689 0.94794 0.92836 0.93726 0.88117 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.13 60.06 0.55 1.07 16 2 N -0.53 -10.51 4.74 -245.83 -1.17 -11.67 16 3 C 0.19 4.66 4.72 -4.98 -0.02 4.64 16 4 C -0.51 -13.62 8.46 -34.44 -0.29 -13.92 16 5 H 0.07 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.12 1.84 5.50 -4.97 -0.03 1.82 16 13 C -0.15 -2.14 5.31 -35.92 -0.19 -2.33 16 14 C 0.04 0.52 11.25 -19.19 -0.22 0.30 16 15 N -0.41 -6.01 10.25 -11.86 -0.12 -6.13 16 16 C -0.10 -1.38 6.72 -13.46 -0.09 -1.47 16 17 C 0.56 6.80 3.53 36.01 0.13 6.92 16 18 F -0.16 -2.02 17.09 2.25 0.04 -1.98 16 19 F -0.17 -1.89 17.30 2.25 0.04 -1.85 16 20 F -0.17 -1.99 17.30 2.25 0.04 -1.95 16 21 S 0.21 2.61 21.82 -107.50 -2.35 0.26 16 22 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 24 H 0.04 0.70 6.12 -51.93 -0.32 0.38 16 25 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16 26 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.10 1.48 7.93 -51.93 -0.41 1.07 16 30 H 0.19 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -28.45 289.34 -6.39 -34.84 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: -2.69 Total: -5.43 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.26 Total: -1.52 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.55 Total: -42.66 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.12 Total: -5.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.35 Total: 0.26 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.45 -6.39 -34.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237947372.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.571 kcal (2) G-P(sol) polarization free energy of solvation -28.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds