Wall clock time and date at job start Tue Mar 31 2020 01:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46890 * 111.00347 * 2 1 4 4 C 1.50700 * 109.47122 * 293.95049 * 3 2 1 5 5 H 1.08001 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00091 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00145 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99984 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47428 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47279 * 119.99719 * 8 6 4 11 11 H 1.48498 * 109.47371 * 239.99727 * 8 6 4 12 12 C 1.46908 * 110.99334 * 123.95219 * 2 1 3 13 13 C 1.50700 * 109.47148 * 66.04654 * 12 2 1 14 14 C 1.33644 * 126.03938 * 90.00134 * 13 12 2 15 15 N 1.31771 * 114.50041 * 180.02562 * 14 13 12 16 16 C 1.29028 * 117.12878 * 359.97438 * 15 14 13 17 17 C 1.50701 * 124.91855 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.46912 * 5.00165 * 17 16 15 19 19 F 1.39904 * 109.47073 * 124.99784 * 17 16 15 20 20 F 1.39900 * 109.46972 * 244.99973 * 17 16 15 21 21 S 1.70979 * 110.16576 * 359.97438 * 16 15 14 22 22 H 1.08995 * 109.47315 * 296.05100 * 1 2 3 23 23 H 1.09002 * 109.46406 * 56.05056 * 1 2 3 24 24 H 1.08999 * 109.47077 * 176.04515 * 1 2 3 25 25 H 1.09000 * 109.47308 * 53.95102 * 3 2 1 26 26 H 1.09006 * 109.47566 * 173.94954 * 3 2 1 27 27 H 0.97001 * 119.99664 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47370 * 306.04334 * 12 2 1 29 29 H 1.09005 * 109.46596 * 186.04461 * 12 2 1 30 30 H 1.08002 * 122.74545 * 359.72316 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6371 2.0470 -1.2985 5 1 1.0741 1.5114 -2.0485 6 6 2.0279 3.3489 -1.5290 7 7 2.7131 4.0014 -0.6154 8 14 1.5842 4.1862 -3.1388 9 1 0.8159 3.2441 -3.9915 10 1 0.7572 5.3879 -2.8603 11 1 2.8262 4.5927 -3.8441 12 6 1.9953 -0.7660 1.1377 13 6 1.6367 -2.2204 0.9730 14 6 2.3717 -3.1456 0.3485 15 7 1.8393 -4.3510 0.3383 16 6 0.6964 -4.4944 0.9198 17 6 -0.0675 -5.7900 1.0129 18 9 0.7038 -6.8258 0.4751 19 9 -0.3519 -6.0683 2.3541 20 9 -1.2637 -5.6786 0.2959 21 16 0.1748 -3.0018 1.5706 22 1 -0.3634 0.4513 0.9232 23 1 -0.3632 0.5739 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 1.5611 1.9273 0.8309 26 1 3.0798 1.3443 0.1083 27 1 2.9877 4.9175 -0.7775 28 1 1.5610 -0.3872 2.0629 29 1 3.0796 -0.6612 1.1758 30 1 3.3217 -2.9225 -0.1142 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237947372.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:02 Heat of formation + Delta-G solvation = -113.367494 kcal Electronic energy + Delta-G solvation = -19176.470036 eV Core-core repulsion = 15490.428263 eV Total energy + Delta-G solvation = -3686.041773 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.36505 -48.89908 -48.84206 -41.05354 -38.42417 -34.84099 -32.94995 -30.09968 -28.96969 -27.36888 -25.67674 -24.62341 -22.50241 -21.40083 -20.29946 -19.77535 -18.91765 -18.40634 -18.29506 -16.92583 -16.38546 -16.06597 -15.85228 -15.74651 -15.66595 -15.27834 -15.16863 -15.11234 -14.98669 -14.98424 -14.13159 -13.90695 -13.79639 -13.39745 -13.08670 -12.81186 -12.64220 -12.36339 -12.31790 -11.89776 -11.36589 -11.09811 -10.65408 -10.53739 -10.26204 -9.12718 -8.20609 -6.29461 -0.86502 -0.19892 0.33117 1.21284 1.41848 1.42615 1.44486 1.56091 2.25247 2.41165 2.92205 3.08618 3.13191 3.29774 3.53691 3.71783 4.00427 4.40824 4.49601 4.61421 4.69796 4.90690 5.01872 5.17071 5.27323 5.63940 6.01679 6.20166 6.24930 6.51496 6.85664 7.40199 8.90285 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.039478 B = 0.003627 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.078295 B = 7717.775252 C = 7844.652357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.006 3.994 7 N -0.932 5.932 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.122 3.878 13 C -0.172 4.172 14 C 0.040 3.960 15 N -0.432 5.432 16 C -0.109 4.109 17 C 0.560 3.440 18 F -0.161 7.161 19 F -0.160 7.160 20 F -0.163 7.163 21 S 0.259 5.741 22 H 0.022 0.978 23 H 0.062 0.938 24 H 0.068 0.932 25 H -0.028 1.028 26 H 0.016 0.984 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.756 -16.796 6.167 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.268 5.268 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.192 4.192 7 N -0.572 5.572 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.008 4.008 13 C -0.294 4.294 14 C -0.112 4.112 15 N -0.147 5.147 16 C -0.385 4.385 17 C 0.502 3.498 18 F -0.142 7.142 19 F -0.141 7.141 20 F -0.144 7.144 21 S 0.512 5.488 22 H 0.041 0.959 23 H 0.081 0.919 24 H 0.086 0.914 25 H -0.010 1.010 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.209 -17.094 6.093 19.180 hybrid contribution 0.514 1.058 -0.419 1.249 sum -5.695 -16.036 5.674 17.938 Atomic orbital electron populations 1.22338 0.87648 1.00921 1.00730 1.62067 1.08299 1.15856 1.40577 1.19432 0.94360 0.82709 0.95304 1.21471 1.34811 0.97419 1.02433 0.92038 1.25800 0.95044 0.98041 1.00320 1.70064 1.39292 1.11924 1.35934 0.85411 0.78026 0.78255 0.79394 1.18984 1.20527 1.20546 1.20593 1.02039 0.85097 0.93081 1.26438 0.97612 1.01681 1.03682 1.21978 1.03325 0.84818 1.01116 1.66055 1.07932 1.25505 1.15255 1.26793 1.00004 1.00435 1.11259 1.16822 0.76813 0.81707 0.74442 1.93239 1.75070 1.59881 1.86006 1.93264 1.93657 1.94126 1.33098 1.93268 1.46931 1.96042 1.78184 1.83847 1.18747 0.97120 1.49055 0.95927 0.91908 0.91387 1.00995 0.96630 0.92668 0.92741 0.87653 0.78101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 9.13 127.69 1.17 2.30 16 2 N -0.54 -21.13 4.74 -931.66 -4.42 -25.55 16 3 C 0.21 10.16 4.72 85.56 0.40 10.56 16 4 C -0.52 -28.10 8.46 25.60 0.22 -27.89 16 5 H 0.06 3.28 7.12 -2.91 -0.02 3.26 16 6 C 0.01 0.35 5.46 84.65 0.46 0.81 16 7 N -0.93 -53.62 13.29 21.45 0.28 -53.34 16 8 Si 0.96 42.84 29.54 68.60 2.03 44.86 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.12 3.68 5.50 85.56 0.47 4.15 16 13 C -0.17 -4.50 5.31 24.64 0.13 -4.37 16 14 C 0.04 1.05 11.25 83.66 0.94 1.99 16 15 N -0.43 -11.93 10.25 -191.44 -1.96 -13.89 16 16 C -0.11 -2.71 6.72 88.52 0.59 -2.12 16 17 C 0.56 12.61 3.53 71.24 0.25 12.87 16 18 F -0.16 -3.89 17.09 44.97 0.77 -3.12 16 19 F -0.16 -3.27 17.30 44.97 0.78 -2.49 16 20 F -0.16 -3.58 17.30 44.97 0.78 -2.80 16 21 S 0.26 5.78 21.82 -56.49 -1.23 4.55 16 22 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 2.45 6.76 -2.39 -0.02 2.43 16 24 H 0.07 2.03 6.12 -2.39 -0.01 2.01 16 25 H -0.03 -1.46 8.12 -2.39 -0.02 -1.48 16 26 H 0.02 0.81 7.93 -2.38 -0.02 0.79 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 29 H 0.11 3.04 7.93 -2.38 -0.02 3.02 16 30 H 0.20 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -59.47 289.34 2.84 -56.63 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.18 Total: -3.15 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 4.64 Total: -1.70 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -6.10 Total: -92.78 kcal Atomic # 9 Polarization: -10.74 SS G_CDS: 2.32 Total: -8.41 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.23 Total: 4.55 kcal Total: -59.47 2.84 -56.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237947372.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.736 kcal (2) G-P(sol) polarization free energy of solvation -59.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds