Wall clock time and date at job start Tue Mar 31 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48499 * 109.47054 * 270.00211 * 3 2 1 5 5 H 1.48507 * 109.46831 * 30.00139 * 3 2 1 6 6 H 1.48495 * 109.47434 * 149.99987 * 3 2 1 7 7 C 1.38639 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99900 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.35700 * 117.00196 * 185.06369 * 9 7 2 11 11 C 1.38734 * 120.12925 * 354.39519 * 10 9 7 12 12 C 1.38131 * 120.04485 * 180.29637 * 11 10 9 13 13 C 1.38427 * 120.30674 * 359.68452 * 12 11 10 14 14 C 1.38045 * 120.26384 * 0.02562 * 13 12 11 15 15 C 1.39221 * 119.94664 * 0.02562 * 14 13 12 16 16 C 1.48422 * 120.15042 * 180.02562 * 15 14 13 17 17 C 1.40866 * 126.22510 * 130.02358 * 16 15 14 18 18 N 1.30674 * 108.10214 * 179.97438 * 17 16 15 19 19 N 1.40004 * 108.53508 * 359.97438 * 18 17 16 20 20 C 1.46502 * 125.89195 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.47042 * 30.02243 * 20 19 18 22 22 F 1.39895 * 109.47400 * 150.02496 * 20 19 18 23 23 C 1.34859 * 108.21458 * 0.02562 * 19 18 17 24 24 H 0.96991 * 120.00519 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.97694 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.84992 * 179.69702 * 12 11 10 27 27 H 1.08002 * 119.86640 * 180.02562 * 13 12 11 28 28 H 1.08003 * 120.02662 * 180.02562 * 14 13 12 29 29 H 1.08003 * 125.94683 * 0.23807 * 17 16 15 30 30 H 1.08995 * 109.47053 * 270.02646 * 20 19 18 31 31 H 1.08002 * 126.19561 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0001 9 8 1.3349 -2.3682 0.0005 10 6 2.0699 -3.5038 0.1078 11 6 3.4557 -3.4403 0.0942 12 6 4.2021 -4.5980 0.1973 13 6 3.5741 -5.8254 0.3212 14 6 2.1959 -5.9027 0.3421 15 6 1.4331 -4.7428 0.2379 16 6 -0.0489 -4.8207 0.2605 17 6 -0.9105 -4.0543 1.0695 18 7 -2.1397 -4.4088 0.8031 19 7 -2.1124 -5.4066 -0.1785 20 6 -3.2808 -6.0752 -0.7565 21 9 -4.3711 -5.1985 -0.7484 22 9 -2.9973 -6.4547 -2.0728 23 6 -0.8248 -5.6470 -0.4994 24 1 -0.4850 0.8399 0.0004 25 1 3.9512 -2.4856 -0.0023 26 1 5.2807 -4.5454 0.1815 27 1 4.1646 -6.7260 0.4017 28 1 1.7099 -6.8623 0.4393 29 1 -0.6081 -3.3015 1.7824 30 1 -3.5217 -6.9598 -0.1672 31 1 -0.4717 -6.3639 -1.2261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238866662.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:13 Heat of formation + Delta-G solvation = -11.701031 kcal Electronic energy + Delta-G solvation = -21027.678537 eV Core-core repulsion = 17334.061707 eV Total energy + Delta-G solvation = -3693.616831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.25995 -47.37811 -40.72361 -38.85315 -36.34072 -32.69469 -32.24065 -31.23688 -29.05146 -28.22249 -25.59573 -25.33879 -22.28306 -21.58095 -20.68968 -19.91728 -18.18330 -18.02478 -17.94191 -17.29543 -16.61544 -15.14305 -14.63537 -14.58439 -14.33713 -14.15812 -14.04072 -13.79544 -13.67593 -13.55285 -13.30876 -12.75890 -12.57482 -12.34051 -12.09232 -11.69593 -11.36782 -10.98610 -10.88927 -10.75309 -10.44826 -10.29969 -9.37363 -9.24967 -8.87848 -8.69404 -7.78571 -7.09412 -6.44801 -4.03669 1.81610 2.09266 2.30841 2.38533 3.12892 3.13842 3.18447 3.36522 3.49203 3.95954 4.11645 4.48333 4.56954 5.02555 5.10084 5.22814 5.37967 5.63947 5.65633 5.86013 5.95588 6.13550 6.16488 6.43170 6.68390 6.83527 6.92507 7.01757 7.09387 7.27185 7.35956 7.41593 7.79099 7.97621 7.99738 8.99953 9.69450 10.71779 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.006129 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.099064 B = 4567.475566 C = 6164.585964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.395 4.395 8 H 0.092 0.908 9 O -0.165 6.165 10 C 0.163 3.837 11 C -0.233 4.233 12 C -0.073 4.073 13 C -0.214 4.214 14 C -0.065 4.065 15 C -0.096 4.096 16 C -0.138 4.138 17 C 0.108 3.892 18 N -0.284 5.284 19 N -0.449 5.449 20 C 0.516 3.484 21 F -0.177 7.177 22 F -0.187 7.187 23 C 0.053 3.947 24 H 0.270 0.730 25 H 0.128 0.872 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.192 0.808 30 H 0.149 0.851 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 -11.996 0.097 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.471 4.471 8 H 0.109 0.891 9 O -0.067 6.067 10 C 0.108 3.892 11 C -0.252 4.252 12 C -0.091 4.091 13 C -0.233 4.233 14 C -0.083 4.083 15 C -0.099 4.099 16 C -0.149 4.149 17 C -0.082 4.082 18 N -0.102 5.102 19 N -0.242 5.242 20 C 0.382 3.618 21 F -0.158 7.158 22 F -0.169 7.169 23 C -0.087 4.087 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.209 0.791 30 H 0.165 0.835 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.812 -11.654 0.218 11.990 hybrid contribution 1.406 0.874 -0.522 1.735 sum -1.406 -10.780 -0.304 10.876 Atomic orbital electron populations 1.70045 1.05824 1.27691 1.45367 1.25258 0.95800 0.98721 0.96521 0.85753 0.78968 0.80283 0.78682 1.19977 1.20277 1.19189 1.21323 0.91805 0.80861 1.53112 0.89112 1.83987 1.34018 1.11179 1.77561 1.19315 0.89979 0.87519 0.92342 1.21108 0.93527 0.99093 1.11489 1.20797 0.98480 0.92399 0.97420 1.20504 0.94139 0.96950 1.11752 1.20661 0.93379 0.95874 0.98391 1.17113 0.89140 0.91100 1.12540 1.18779 0.93369 1.00913 1.01812 1.24237 0.88634 0.97043 0.98241 1.77347 1.22022 1.04129 1.06699 1.49502 1.05073 1.34656 1.34962 1.21095 0.74417 0.87738 0.78581 1.93113 1.53899 1.72468 1.96335 1.93104 1.93441 1.91014 1.39307 1.22332 0.82868 1.02476 1.01043 0.92001 0.85440 0.87547 0.87591 0.87109 0.79110 0.83491 0.80735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.67 9.49 30.88 0.29 -10.38 16 8 H 0.09 2.28 5.21 -52.48 -0.27 2.00 16 9 O -0.17 -4.48 8.67 0.27 0.00 -4.48 16 10 C 0.16 3.79 6.63 -38.77 -0.26 3.53 16 11 C -0.23 -4.88 9.16 -39.44 -0.36 -5.25 16 12 C -0.07 -1.28 10.03 -39.55 -0.40 -1.68 16 13 C -0.21 -3.53 10.03 -39.58 -0.40 -3.93 16 14 C -0.06 -1.10 9.70 -39.29 -0.38 -1.48 16 15 C -0.10 -1.96 5.77 -104.71 -0.60 -2.56 16 16 C -0.14 -2.72 5.31 -105.35 -0.56 -3.28 16 17 C 0.11 2.24 11.31 -17.05 -0.19 2.05 16 18 N -0.28 -5.68 12.37 30.81 0.38 -5.30 16 19 N -0.45 -7.53 3.97 -66.37 -0.26 -7.80 16 20 C 0.52 6.43 6.63 59.85 0.40 6.83 16 21 F -0.18 -2.62 17.35 2.25 0.04 -2.58 16 22 F -0.19 -2.35 17.01 2.25 0.04 -2.31 16 23 C 0.05 0.89 10.91 -16.86 -0.18 0.71 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.13 2.68 5.64 -52.49 -0.30 2.38 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 27 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.19 4.05 8.06 -52.48 -0.42 3.63 16 30 H 0.15 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.18 2.33 8.06 -52.49 -0.42 1.90 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -31.72 291.95 -4.65 -36.37 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -2.24 Total: 4.72 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.74 Total: -14.40 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.88 Total: -36.96 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: 0.00 Total: -4.48 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.08 Total: -4.89 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.72 -4.65 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238866662.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.673 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds