Wall clock time and date at job start Tue Mar 31 2020 01:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86801 * 120.00129 * 2 1 4 4 H 1.48499 * 109.47054 * 270.00211 * 3 2 1 5 5 H 1.48507 * 109.46831 * 30.00139 * 3 2 1 6 6 H 1.48495 * 109.47434 * 149.99987 * 3 2 1 7 7 C 1.38639 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99900 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00268 * 0.02562 * 7 2 1 10 10 C 1.35700 * 117.00196 * 185.06369 * 9 7 2 11 11 C 1.38734 * 120.12925 * 354.39519 * 10 9 7 12 12 C 1.38131 * 120.04485 * 180.29637 * 11 10 9 13 13 C 1.38427 * 120.30674 * 359.68452 * 12 11 10 14 14 C 1.38045 * 120.26384 * 0.02562 * 13 12 11 15 15 C 1.39221 * 119.94664 * 0.02562 * 14 13 12 16 16 C 1.48422 * 120.15042 * 180.02562 * 15 14 13 17 17 C 1.40866 * 126.22510 * 130.02358 * 16 15 14 18 18 N 1.30674 * 108.10214 * 179.97438 * 17 16 15 19 19 N 1.40004 * 108.53508 * 359.97438 * 18 17 16 20 20 C 1.46502 * 125.89195 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.47042 * 30.02243 * 20 19 18 22 22 F 1.39895 * 109.47400 * 150.02496 * 20 19 18 23 23 C 1.34859 * 108.21458 * 0.02562 * 19 18 17 24 24 H 0.96991 * 120.00519 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.97694 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.84992 * 179.69702 * 12 11 10 27 27 H 1.08002 * 119.86640 * 180.02562 * 13 12 11 28 28 H 1.08003 * 120.02662 * 180.02562 * 14 13 12 29 29 H 1.08003 * 125.94683 * 0.23807 * 17 16 15 30 30 H 1.08995 * 109.47053 * 270.02646 * 20 19 18 31 31 H 1.08002 * 126.19561 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0001 9 8 1.3349 -2.3682 0.0005 10 6 2.0699 -3.5038 0.1078 11 6 3.4557 -3.4403 0.0942 12 6 4.2021 -4.5980 0.1973 13 6 3.5741 -5.8254 0.3212 14 6 2.1959 -5.9027 0.3421 15 6 1.4331 -4.7428 0.2379 16 6 -0.0489 -4.8207 0.2605 17 6 -0.9105 -4.0543 1.0695 18 7 -2.1397 -4.4088 0.8031 19 7 -2.1124 -5.4066 -0.1785 20 6 -3.2808 -6.0752 -0.7565 21 9 -4.3711 -5.1985 -0.7484 22 9 -2.9973 -6.4547 -2.0728 23 6 -0.8248 -5.6470 -0.4994 24 1 -0.4850 0.8399 0.0004 25 1 3.9512 -2.4856 -0.0023 26 1 5.2807 -4.5454 0.1815 27 1 4.1646 -6.7260 0.4017 28 1 1.7099 -6.8623 0.4393 29 1 -0.6081 -3.3015 1.7824 30 1 -3.5217 -6.9598 -0.1672 31 1 -0.4717 -6.3639 -1.2261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238866662.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:13 Heat of formation + Delta-G solvation = -31.919916 kcal Electronic energy + Delta-G solvation = -21028.555294 eV Core-core repulsion = 17334.061707 eV Total energy + Delta-G solvation = -3694.493587 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.29913 -48.43533 -42.15452 -40.48555 -37.97807 -34.29453 -33.94431 -32.69887 -30.57788 -29.66975 -27.27495 -26.79398 -23.73040 -23.15107 -22.09337 -21.35954 -19.72767 -19.49266 -19.02926 -18.56898 -18.10141 -16.63145 -16.28811 -16.13391 -15.80811 -15.48691 -15.39537 -15.21407 -15.09166 -14.79837 -14.61062 -14.34348 -14.08689 -13.81784 -13.49567 -13.17390 -12.98823 -12.52929 -12.43629 -12.28135 -12.11193 -11.78960 -11.11645 -10.76838 -10.67463 -10.17576 -9.26773 -8.69628 -8.41162 -6.07427 0.40809 0.71798 0.84377 1.04043 1.35591 1.44340 1.52025 1.83868 2.19441 2.57995 2.89639 2.98634 3.26813 3.59042 3.61604 3.80554 3.95913 4.21590 4.29110 4.39780 4.55858 4.69162 4.74154 4.93805 5.17419 5.21229 5.34560 5.43959 5.66296 5.77367 5.84412 5.86419 6.08819 6.32280 6.51966 7.03611 7.87482 8.80151 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.006129 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.099064 B = 4567.475566 C = 6164.585964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 1.011 2.989 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.410 4.410 8 H 0.099 0.901 9 O -0.214 6.214 10 C 0.120 3.880 11 C -0.249 4.249 12 C -0.074 4.074 13 C -0.189 4.189 14 C -0.060 4.060 15 C -0.100 4.100 16 C -0.172 4.172 17 C 0.085 3.915 18 N -0.308 5.308 19 N -0.445 5.445 20 C 0.509 3.491 21 F -0.194 7.194 22 F -0.185 7.185 23 C 0.080 3.920 24 H 0.268 0.732 25 H 0.115 0.885 26 H 0.141 0.859 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.166 0.834 30 H 0.212 0.788 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 -15.301 -0.448 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.217 4.217 3 Si 0.831 3.169 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.486 4.486 8 H 0.116 0.884 9 O -0.120 6.120 10 C 0.069 3.931 11 C -0.268 4.268 12 C -0.092 4.092 13 C -0.207 4.207 14 C -0.078 4.078 15 C -0.103 4.103 16 C -0.183 4.183 17 C -0.103 4.103 18 N -0.128 5.128 19 N -0.238 5.238 20 C 0.377 3.623 21 F -0.175 7.175 22 F -0.166 7.166 23 C -0.062 4.062 24 H 0.077 0.923 25 H 0.133 0.867 26 H 0.159 0.841 27 H 0.170 0.830 28 H 0.168 0.832 29 H 0.183 0.817 30 H 0.228 0.772 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.205 -15.014 -0.322 15.066 hybrid contribution 0.984 1.503 -0.380 1.837 sum -0.221 -13.510 -0.702 13.531 Atomic orbital electron populations 1.70209 1.07803 1.28316 1.48893 1.26428 0.96680 1.02395 0.96219 0.84683 0.77957 0.75239 0.78976 1.19247 1.19999 1.17590 1.21765 0.92384 0.81732 1.52764 0.88372 1.83971 1.35205 1.12006 1.80799 1.19950 0.91233 0.87708 0.94169 1.21238 0.93034 1.00233 1.12293 1.21202 1.00162 0.91633 0.96216 1.21106 0.94229 0.97965 1.07424 1.21140 0.93803 0.96207 0.96675 1.17494 0.89957 0.91138 1.11679 1.18925 0.93545 1.02461 1.03370 1.23998 0.89709 0.97485 0.99073 1.77239 1.21569 1.05598 1.08366 1.49935 1.06654 1.33442 1.33777 1.22171 0.72411 0.88509 0.79175 1.93084 1.54556 1.73432 1.96421 1.93110 1.93291 1.90726 1.39518 1.22842 0.82370 1.01347 0.99676 0.92291 0.86677 0.84122 0.83026 0.83151 0.81662 0.77161 0.76604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.67 21.61 0.30 -56.10 16 2 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 3 Si 1.01 43.36 29.55 68.60 2.03 45.38 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.41 -23.53 9.49 67.92 0.64 -22.89 16 8 H 0.10 5.20 5.21 -2.91 -0.02 5.19 16 9 O -0.21 -12.43 8.67 -21.96 -0.19 -12.62 16 10 C 0.12 5.78 6.63 22.79 0.15 5.93 16 11 C -0.25 -10.48 9.16 22.36 0.20 -10.27 16 12 C -0.07 -2.38 10.03 22.29 0.22 -2.16 16 13 C -0.19 -5.27 10.03 22.27 0.22 -5.04 16 14 C -0.06 -1.82 9.70 22.46 0.22 -1.61 16 15 C -0.10 -4.02 5.77 -19.92 -0.11 -4.14 16 16 C -0.17 -6.81 5.31 -20.33 -0.11 -6.92 16 17 C 0.09 3.76 11.31 85.51 0.97 4.72 16 18 N -0.31 -12.63 12.37 -56.44 -0.70 -13.33 16 19 N -0.45 -14.23 3.97 -363.91 -1.44 -15.67 16 20 C 0.51 11.21 6.63 127.77 0.85 12.05 16 21 F -0.19 -5.48 17.35 44.97 0.78 -4.70 16 22 F -0.18 -4.04 17.01 44.97 0.76 -3.27 16 23 C 0.08 2.50 10.91 83.81 0.91 3.41 16 24 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 25 H 0.12 5.00 5.64 -2.91 -0.02 4.98 16 26 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.17 7.89 8.06 -2.91 -0.02 7.87 16 30 H 0.21 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.22 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -76.27 291.95 7.35 -68.92 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.18 Total: 18.93 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.64 Total: -27.54 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.85 Total: -85.11 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.19 Total: -12.62 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 1.55 Total: -7.97 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -76.27 7.35 -68.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238866662.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.997 kcal (2) G-P(sol) polarization free energy of solvation -76.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds