Wall clock time and date at job start Tue Mar 31 2020 01:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.40059 * 125.97745 * 90.02350 * 10 9 7 12 12 C 1.31602 * 108.28203 * 179.97438 * 11 10 9 13 13 C 1.48399 * 125.94351 * 180.02562 * 12 11 10 14 14 C 1.39308 * 120.12192 * 359.97151 * 13 12 11 15 15 C 1.38210 * 119.88027 * 179.97438 * 14 13 12 16 16 F 1.35098 * 119.93988 * 180.02562 * 15 14 13 17 17 C 1.38552 * 120.12131 * 0.02562 * 15 14 13 18 18 C 1.38246 * 120.23839 * 359.97438 * 17 15 14 19 19 C 1.38273 * 120.12258 * 359.74456 * 18 17 15 20 20 F 1.35098 * 120.05950 * 180.27430 * 19 18 17 21 21 C 1.40787 * 108.11072 * 359.97438 * 12 11 10 22 22 C 1.35735 * 107.80236 * 359.75886 * 21 12 11 23 23 O 1.35756 * 126.12626 * 180.23510 * 22 21 12 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.07997 * 120.05648 * 0.02562 * 14 13 12 28 28 H 1.07999 * 119.88560 * 180.02562 * 17 15 14 29 29 H 1.08007 * 119.94089 * 180.02562 * 18 17 15 30 30 H 1.08001 * 126.10178 * 180.02562 * 21 12 11 31 31 H 0.96696 * 114.00225 * 270.18381 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.7370 -4.2434 1.1204 12 6 3.5515 -5.1949 0.7163 13 6 4.3271 -6.1078 1.5921 14 6 4.2285 -5.9990 2.9774 15 6 4.9527 -6.8523 3.7884 16 9 4.8576 -6.7481 5.1320 17 6 5.7761 -7.8142 3.2260 18 6 5.8777 -7.9266 1.8518 19 6 5.1532 -7.0820 1.0311 20 9 5.2492 -7.1966 -0.3116 21 6 3.5580 -5.1966 -0.6916 22 6 2.7162 -4.2181 -1.1117 23 8 2.4401 -3.8994 -2.4020 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 3.5867 -5.2498 3.4168 28 1 6.3400 -8.4793 3.8633 29 1 6.5207 -8.6785 1.4185 30 1 4.1274 -5.8610 -1.3245 31 1 3.0317 -3.2332 -2.7779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245929756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:17 Heat of formation + Delta-G solvation = -31.534400 kcal Electronic energy + Delta-G solvation = -20676.640910 eV Core-core repulsion = 16982.164041 eV Total energy + Delta-G solvation = -3694.476870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.96801 -48.94439 -40.68718 -38.68693 -36.65075 -33.95467 -32.47064 -30.80779 -29.96290 -28.64769 -27.02030 -24.24006 -22.84827 -22.52153 -20.63807 -20.06992 -18.01043 -17.57460 -17.08242 -16.89548 -16.44955 -15.92530 -15.71222 -15.34899 -14.83474 -14.68523 -14.40924 -14.09134 -13.73885 -13.49039 -13.24622 -12.97441 -12.52990 -12.48488 -11.94263 -11.75635 -11.49135 -11.15439 -10.96699 -10.81293 -10.34887 -10.16047 -9.95856 -9.47145 -8.77363 -8.72671 -8.20378 -7.86057 -6.34704 -4.43934 0.69184 0.92192 2.35696 2.88323 3.12671 3.16806 3.21886 3.26276 3.69091 3.99824 4.08439 4.20428 4.34190 4.53338 4.74002 4.96279 5.00493 5.03818 5.41903 5.70733 5.77117 5.89012 5.91679 6.01952 6.12113 6.43866 6.69593 6.74656 6.91691 7.10690 7.27322 7.59704 7.76615 8.10695 8.27327 8.61388 9.23031 10.73160 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.004524 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.541282 B = 6187.766811 C = 7051.539268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.323 5.323 11 N -0.254 5.254 12 C 0.071 3.929 13 C 0.008 3.992 14 C -0.106 4.106 15 C 0.090 3.910 16 F -0.136 7.136 17 C -0.130 4.130 18 C -0.125 4.125 19 C 0.105 3.895 20 F -0.125 7.125 21 C -0.282 4.282 22 C 0.261 3.739 23 O -0.466 6.466 24 H 0.270 0.730 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.154 0.846 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.678 -13.601 2.110 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.134 3.866 10 N -0.114 5.114 11 N -0.083 5.083 12 C -0.089 4.089 13 C 0.005 3.995 14 C -0.126 4.126 15 C 0.071 3.929 16 F -0.114 7.114 17 C -0.150 4.150 18 C -0.144 4.144 19 C 0.084 3.916 20 F -0.103 7.103 21 C -0.313 4.313 22 C 0.090 3.910 23 O -0.269 6.269 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.171 0.829 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.174 0.826 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 9.398 -13.136 3.022 16.432 hybrid contribution 0.973 1.071 -0.863 1.685 sum 10.370 -12.065 2.158 16.055 Atomic orbital electron populations 1.69912 1.06095 1.27989 1.48484 1.24932 0.94989 0.99495 0.94183 0.86377 0.79421 0.81696 0.78963 1.19943 1.20820 1.19865 1.21214 0.93592 0.89560 1.53916 0.91845 1.19822 0.86285 0.80198 1.00292 1.50170 1.33692 1.25764 1.01780 1.77550 1.13179 1.09334 1.08236 1.19826 0.99868 0.97237 0.91978 1.17637 0.96049 0.94122 0.91721 1.21171 0.99883 0.99723 0.91835 1.17522 0.99834 0.98239 0.77350 1.91516 1.95084 1.95556 1.29282 1.20963 1.00021 0.99050 0.94965 1.20835 1.00752 1.00176 0.92650 1.17560 0.99073 0.97357 0.77590 1.91457 1.94690 1.95077 1.29124 1.21277 1.08543 1.07275 0.94164 1.18830 0.96279 0.94771 0.81169 1.84776 1.60053 1.62686 1.19420 0.92018 0.92598 0.92363 0.82851 0.83822 0.83515 0.82644 0.74577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.57 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.62 9.39 -34.44 -0.32 -14.94 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.25 6.39 6.14 -5.20 -0.03 6.36 16 10 N -0.32 -7.45 3.62 -62.56 -0.23 -7.67 16 11 N -0.25 -5.61 12.22 33.41 0.41 -5.20 16 12 C 0.07 1.36 6.98 -82.82 -0.58 0.78 16 13 C 0.01 0.12 5.88 -104.84 -0.62 -0.50 16 14 C -0.11 -1.52 9.66 -39.19 -0.38 -1.90 16 15 C 0.09 1.09 7.29 -39.48 -0.29 0.81 16 16 F -0.14 -1.70 17.26 2.25 0.04 -1.67 16 17 C -0.13 -1.26 10.02 -39.46 -0.40 -1.65 16 18 C -0.13 -1.23 10.01 -39.57 -0.40 -1.63 16 19 C 0.11 1.38 7.27 -39.10 -0.28 1.10 16 20 F -0.13 -1.70 14.22 2.25 0.03 -1.66 16 21 C -0.28 -5.27 9.88 -39.51 -0.39 -5.66 16 22 C 0.26 5.33 7.98 -16.71 -0.13 5.20 16 23 O -0.47 -8.41 13.58 -18.98 -0.26 -8.67 16 24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 26 H 0.06 1.52 8.13 -51.93 -0.42 1.10 16 27 H 0.15 2.31 7.85 -52.49 -0.41 1.90 16 28 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.16 2.55 6.05 -52.49 -0.32 2.23 16 31 H 0.40 5.42 9.06 45.56 0.41 5.83 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -29.89 292.49 -5.35 -35.24 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -1.55 Total: 3.95 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.91 Total: -10.30 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.92 Total: -36.86 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.26 Total: -8.67 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.89 -5.35 -35.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245929756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.702 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds