Wall clock time and date at job start Tue Mar 31 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48494 * 109.47371 * 270.00109 * 3 2 1 5 5 H 1.48505 * 109.47241 * 30.00415 * 3 2 1 6 6 H 1.48505 * 109.46994 * 149.99711 * 3 2 1 7 7 C 1.37872 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46721 * 180.02562 * 9 7 2 11 11 N 1.40065 * 125.97234 * 90.02508 * 10 9 7 12 12 C 1.31597 * 108.27824 * 179.97438 * 11 10 9 13 13 C 1.48390 * 125.94544 * 179.97438 * 12 11 10 14 14 C 1.39499 * 120.14525 * 179.75259 * 13 12 11 15 15 F 1.35103 * 120.07001 * 359.97438 * 14 13 12 16 16 C 1.38272 * 119.85595 * 179.81664 * 14 13 12 17 17 C 1.38289 * 120.13660 * 0.44394 * 16 14 13 18 18 C 1.38281 * 120.29693 * 359.78508 * 17 16 14 19 19 C 1.38269 * 120.14510 * 0.02562 * 18 17 16 20 20 F 1.35102 * 120.07233 * 179.97438 * 19 18 17 21 21 C 1.40797 * 108.11288 * 0.02562 * 12 11 10 22 22 C 1.35734 * 107.79557 * 359.97438 * 21 12 11 23 23 O 1.35762 * 126.11892 * 179.97438 * 22 21 12 24 24 H 0.97002 * 120.00243 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.46976 * 60.00074 * 9 7 2 26 26 H 1.08997 * 109.46960 * 299.99750 * 9 7 2 27 27 H 1.07993 * 119.92939 * 180.18579 * 16 14 13 28 28 H 1.08009 * 119.84786 * 179.77078 * 17 16 14 29 29 H 1.08004 * 119.92966 * 179.97438 * 18 17 16 30 30 H 1.07994 * 126.09956 * 179.97438 * 21 12 11 31 31 H 0.96704 * 114.00163 * 270.02593 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 7 2.7365 -4.2387 1.1322 12 6 3.5513 -5.1917 0.7325 13 6 4.3271 -6.1004 1.6124 14 6 5.1547 -7.0761 1.0565 15 9 5.2518 -7.1970 -0.2856 16 6 5.8779 -7.9172 1.8820 17 6 5.7750 -7.7985 3.2560 18 6 4.9529 -6.8365 3.8135 19 6 4.2273 -5.9866 2.9992 20 9 3.4241 -5.0476 3.5454 21 6 3.5597 -5.1983 -0.6755 22 6 2.7224 -4.2180 -1.1000 23 8 2.4531 -3.8994 -2.3919 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5562 -0.8919 26 1 0.6241 -2.5574 0.8880 27 1 6.5212 -8.6710 1.4529 28 1 6.3392 -8.4604 3.8965 29 1 4.8766 -6.7493 4.8873 30 1 4.1305 -5.8646 -1.3052 31 1 3.0467 -3.2332 -2.7647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245931795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:20 Heat of formation + Delta-G solvation = -27.159928 kcal Electronic energy + Delta-G solvation = -21028.648340 eV Core-core repulsion = 17334.361161 eV Total energy + Delta-G solvation = -3694.287179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.99176 -48.67080 -40.59089 -38.65305 -36.61699 -33.91633 -32.38948 -30.43477 -30.37341 -28.59439 -26.94391 -24.04610 -22.86755 -22.46378 -20.58489 -20.01159 -18.07892 -17.73971 -16.85539 -16.64497 -15.96771 -15.84573 -15.54551 -15.50969 -15.08781 -14.69272 -14.61385 -13.95271 -13.90174 -13.36680 -13.08813 -12.66187 -12.39959 -12.00152 -11.97226 -11.70018 -11.63276 -11.21135 -10.96812 -10.81009 -10.31085 -10.11450 -9.85247 -9.35018 -8.78916 -8.69337 -8.15196 -7.79248 -6.30938 -4.39735 0.73748 0.94370 2.42205 2.95924 3.17337 3.19163 3.24460 3.31054 3.69508 3.86582 4.23565 4.31869 4.39468 4.62004 4.63787 4.96526 5.03383 5.07378 5.47353 5.69136 5.84035 5.94359 5.99494 6.04580 6.07083 6.45490 6.71864 6.79421 6.97058 7.16205 7.32685 7.63819 7.81188 8.16018 8.34183 8.65908 9.26941 10.77011 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.004879 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.026082 B = 5737.121985 C = 6433.457884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.325 5.325 11 N -0.244 5.244 12 C 0.069 3.931 13 C -0.064 4.064 14 C 0.145 3.855 15 F -0.122 7.122 16 C -0.168 4.168 17 C -0.066 4.066 18 C -0.169 4.169 19 C 0.149 3.851 20 F -0.109 7.109 21 C -0.284 4.284 22 C 0.260 3.740 23 O -0.466 6.466 24 H 0.269 0.731 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.320 -14.335 3.205 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.134 3.866 10 N -0.116 5.116 11 N -0.073 5.073 12 C -0.091 4.091 13 C -0.067 4.067 14 C 0.123 3.877 15 F -0.100 7.100 16 C -0.187 4.187 17 C -0.085 4.085 18 C -0.187 4.187 19 C 0.128 3.872 20 F -0.087 7.087 21 C -0.314 4.314 22 C 0.089 3.911 23 O -0.270 6.270 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.173 0.827 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 10.008 -13.831 4.087 17.555 hybrid contribution 0.839 1.220 -1.037 1.808 sum 10.847 -12.611 3.049 16.911 Atomic orbital electron populations 1.69923 1.06085 1.27817 1.48719 1.24931 0.94986 0.99482 0.94243 0.86326 0.79769 0.82074 0.78352 1.20270 1.20726 1.19644 1.21257 0.93614 0.89585 1.53595 0.91838 1.19810 0.86312 0.80238 1.00234 1.50213 1.33612 1.25946 1.01829 1.77760 1.12820 1.09130 1.07553 1.19751 1.00022 0.97299 0.92043 1.17930 1.00082 0.97434 0.91289 1.17253 0.97149 0.95732 0.77527 1.91470 1.94498 1.94859 1.29215 1.21057 1.02502 1.01387 0.93755 1.20821 0.96850 0.96862 0.93959 1.21155 0.99489 0.97277 1.00827 1.17452 0.91508 0.88617 0.89609 1.91636 1.70093 1.61825 1.85178 1.21214 1.08888 1.07341 0.93953 1.18815 0.96357 0.94810 0.81162 1.84773 1.60154 1.62673 1.19353 0.92120 0.92408 0.92597 0.83927 0.84045 0.83923 0.82736 0.74644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.98 9.39 -34.44 -0.32 -15.30 16 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.25 6.62 6.14 -5.19 -0.03 6.59 16 10 N -0.32 -7.84 3.62 -62.56 -0.23 -8.07 16 11 N -0.24 -5.76 11.22 33.41 0.37 -5.39 16 12 C 0.07 1.42 6.98 -82.82 -0.58 0.84 16 13 C -0.06 -1.06 5.89 -104.78 -0.62 -1.67 16 14 C 0.14 1.95 7.27 -39.10 -0.28 1.67 16 15 F -0.12 -1.71 14.22 2.25 0.03 -1.67 16 16 C -0.17 -1.64 10.01 -39.55 -0.40 -2.03 16 17 C -0.07 -0.56 10.03 -39.55 -0.40 -0.96 16 18 C -0.17 -1.82 10.01 -39.55 -0.40 -2.21 16 19 C 0.15 2.28 7.28 -39.10 -0.28 2.00 16 20 F -0.11 -1.99 15.78 2.25 0.04 -1.96 16 21 C -0.28 -5.55 9.88 -39.51 -0.39 -5.94 16 22 C 0.26 5.54 7.98 -16.71 -0.13 5.40 16 23 O -0.47 -8.71 13.58 -18.99 -0.26 -8.97 16 24 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 25 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 29 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 30 H 0.16 2.64 6.05 -52.49 -0.32 2.33 16 31 H 0.40 5.64 9.06 45.56 0.41 6.05 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -31.93 290.59 -5.44 -37.37 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -1.56 Total: 2.68 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -3.93 Total: -9.87 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.88 Total: -37.95 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.26 Total: -8.97 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.93 -5.44 -37.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245931795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.212 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds