Wall clock time and date at job start Tue Mar 31 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48494 * 109.47371 * 270.00109 * 3 2 1 5 5 H 1.48505 * 109.47241 * 30.00415 * 3 2 1 6 6 H 1.48505 * 109.46994 * 149.99711 * 3 2 1 7 7 C 1.37872 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46721 * 180.02562 * 9 7 2 11 11 N 1.40065 * 125.97234 * 90.02508 * 10 9 7 12 12 C 1.31597 * 108.27824 * 179.97438 * 11 10 9 13 13 C 1.48390 * 125.94544 * 179.97438 * 12 11 10 14 14 C 1.39499 * 120.14525 * 179.75259 * 13 12 11 15 15 F 1.35103 * 120.07001 * 359.97438 * 14 13 12 16 16 C 1.38272 * 119.85595 * 179.81664 * 14 13 12 17 17 C 1.38289 * 120.13660 * 0.44394 * 16 14 13 18 18 C 1.38281 * 120.29693 * 359.78508 * 17 16 14 19 19 C 1.38269 * 120.14510 * 0.02562 * 18 17 16 20 20 F 1.35102 * 120.07233 * 179.97438 * 19 18 17 21 21 C 1.40797 * 108.11288 * 0.02562 * 12 11 10 22 22 C 1.35734 * 107.79557 * 359.97438 * 21 12 11 23 23 O 1.35762 * 126.11892 * 179.97438 * 22 21 12 24 24 H 0.97002 * 120.00243 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.46976 * 60.00074 * 9 7 2 26 26 H 1.08997 * 109.46960 * 299.99750 * 9 7 2 27 27 H 1.07993 * 119.92939 * 180.18579 * 16 14 13 28 28 H 1.08009 * 119.84786 * 179.77078 * 17 16 14 29 29 H 1.08004 * 119.92966 * 179.97438 * 18 17 16 30 30 H 1.07994 * 126.09956 * 179.97438 * 21 12 11 31 31 H 0.96704 * 114.00163 * 270.02593 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 7 2.7365 -4.2387 1.1322 12 6 3.5513 -5.1917 0.7325 13 6 4.3271 -6.1004 1.6124 14 6 5.1547 -7.0761 1.0565 15 9 5.2518 -7.1970 -0.2856 16 6 5.8779 -7.9172 1.8820 17 6 5.7750 -7.7985 3.2560 18 6 4.9529 -6.8365 3.8135 19 6 4.2273 -5.9866 2.9992 20 9 3.4241 -5.0476 3.5454 21 6 3.5597 -5.1983 -0.6755 22 6 2.7224 -4.2180 -1.1000 23 8 2.4531 -3.8994 -2.3919 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5562 -0.8919 26 1 0.6241 -2.5574 0.8880 27 1 6.5212 -8.6710 1.4529 28 1 6.3392 -8.4604 3.8965 29 1 4.8766 -6.7493 4.8873 30 1 4.1305 -5.8646 -1.3052 31 1 3.0467 -3.2332 -2.7647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245931795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:19 Heat of formation + Delta-G solvation = -49.852099 kcal Electronic energy + Delta-G solvation = -21029.632346 eV Core-core repulsion = 17334.361161 eV Total energy + Delta-G solvation = -3695.271185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02551 -49.89527 -42.22429 -39.62102 -38.15209 -35.87189 -34.04132 -31.88037 -31.29732 -30.20929 -28.78590 -25.65612 -24.06175 -23.80774 -22.15111 -21.47317 -19.46052 -19.01467 -18.71963 -17.95095 -17.39489 -17.00820 -16.94375 -16.58560 -16.37104 -16.24558 -16.04372 -15.50795 -15.10971 -14.89208 -14.62903 -14.22365 -13.83029 -13.61099 -13.27863 -12.98017 -12.84572 -12.75771 -12.69380 -12.40170 -12.20054 -11.96268 -11.47025 -10.85126 -10.80081 -9.75276 -9.71307 -9.32040 -8.40725 -6.60054 -0.30846 0.02452 0.80124 1.33892 1.35873 1.44585 1.52065 1.71047 2.28549 2.56382 2.85932 2.89714 2.93688 3.37056 3.48549 3.68619 3.88904 4.13227 4.25649 4.47128 4.67194 4.78211 4.80737 4.90700 4.98388 5.06769 5.15236 5.23068 5.41339 5.54157 5.68816 5.76397 5.81622 6.43861 6.61850 6.73291 7.11993 8.67121 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022907 B = 0.004879 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.026082 B = 5737.121985 C = 6433.457884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.559 4.559 8 H 0.054 0.946 9 C 0.270 3.730 10 N -0.356 5.356 11 N -0.292 5.292 12 C 0.079 3.921 13 C -0.109 4.109 14 C 0.137 3.863 15 F -0.129 7.129 16 C -0.149 4.149 17 C -0.036 4.036 18 C -0.157 4.157 19 C 0.117 3.883 20 F -0.139 7.139 21 C -0.281 4.281 22 C 0.255 3.745 23 O -0.468 6.468 24 H 0.275 0.725 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.183 0.817 28 H 0.196 0.804 29 H 0.170 0.830 30 H 0.181 0.819 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.371 -16.201 3.866 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.597 4.597 8 H 0.072 0.928 9 C 0.151 3.849 10 N -0.148 5.148 11 N -0.120 5.120 12 C -0.082 4.082 13 C -0.113 4.113 14 C 0.116 3.884 15 F -0.107 7.107 16 C -0.167 4.167 17 C -0.054 4.054 18 C -0.176 4.176 19 C 0.096 3.904 20 F -0.118 7.118 21 C -0.311 4.311 22 C 0.084 3.916 23 O -0.274 6.274 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.042 0.958 27 H 0.201 0.799 28 H 0.214 0.786 29 H 0.187 0.813 30 H 0.198 0.802 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 13.068 -15.707 4.725 20.972 hybrid contribution 0.012 1.571 -1.181 1.966 sum 13.080 -14.135 3.544 19.582 Atomic orbital electron populations 1.70025 1.07591 1.29114 1.48937 1.25847 0.95856 1.03031 0.93259 0.85237 0.78086 0.77348 0.79084 1.18587 1.19812 1.19837 1.21398 0.93207 0.90668 1.54404 0.92796 1.19267 0.86467 0.81237 0.97901 1.49981 1.34967 1.26751 1.03068 1.77710 1.15111 1.11208 1.07983 1.20512 0.98310 0.96155 0.93240 1.18124 1.02424 0.99078 0.91649 1.17553 0.97355 0.95837 0.77689 1.91440 1.94538 1.94862 1.29857 1.21580 1.00932 1.00309 0.93910 1.21495 0.94586 0.95345 0.94002 1.21565 0.98127 0.96105 1.01806 1.17989 0.92830 0.89656 0.89903 1.91557 1.71371 1.63357 1.85490 1.21516 1.08527 1.07019 0.94008 1.19165 0.96130 0.94863 0.81421 1.84727 1.61047 1.63462 1.18134 0.91576 0.93829 0.95784 0.79943 0.78650 0.81258 0.80174 0.72452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 2 C 0.02 1.19 5.46 84.65 0.46 1.66 16 3 Si 0.98 43.57 29.54 68.60 2.03 45.59 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.56 -32.27 9.39 25.60 0.24 -32.03 16 8 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 9 C 0.27 15.25 6.14 85.63 0.53 15.77 16 10 N -0.36 -18.32 3.62 -462.82 -1.67 -20.00 16 11 N -0.29 -14.73 11.22 -48.22 -0.54 -15.27 16 12 C 0.08 3.38 6.98 42.51 0.30 3.67 16 13 C -0.11 -3.62 5.89 -19.96 -0.12 -3.74 16 14 C 0.14 3.40 7.27 22.58 0.16 3.56 16 15 F -0.13 -3.35 14.22 44.97 0.64 -2.71 16 16 C -0.15 -2.14 10.01 22.29 0.22 -1.92 16 17 C -0.04 -0.40 10.03 22.29 0.22 -0.18 16 18 C -0.16 -2.86 10.01 22.29 0.22 -2.64 16 19 C 0.12 3.56 7.28 22.58 0.16 3.73 16 20 F -0.14 -5.36 15.78 44.97 0.71 -4.65 16 21 C -0.28 -11.22 9.88 22.32 0.22 -11.00 16 22 C 0.25 11.28 7.98 83.51 0.67 11.94 16 23 O -0.47 -17.89 13.58 -90.88 -1.23 -19.12 16 24 H 0.28 14.90 8.31 -92.71 -0.77 14.12 16 25 H 0.04 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.02 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 28 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 29 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.18 6.07 6.05 -2.91 -0.02 6.05 16 31 H 0.42 11.99 9.06 -74.05 -0.67 11.32 16 Total: -1.00 -75.26 290.59 4.03 -71.22 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.53 Total: 9.48 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.29 Total: -11.18 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -1.93 Total: -88.65 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.23 Total: -19.12 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 1.35 Total: -7.35 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -75.26 4.03 -71.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245931795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.372 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds