Wall clock time and date at job start Tue Mar 31 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99518 * 2 1 4 4 H 1.48507 * 109.46979 * 240.00305 * 3 2 1 5 5 H 1.48499 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46944 * 120.00815 * 3 2 1 7 7 C 1.37874 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99691 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47065 * 180.02562 * 9 7 2 11 11 N 1.40060 * 125.97791 * 90.02410 * 10 9 7 12 12 C 1.31594 * 108.27821 * 179.97438 * 11 10 9 13 13 C 1.48420 * 125.94024 * 179.97438 * 12 11 10 14 14 C 1.39339 * 120.08463 * 180.02562 * 13 12 11 15 15 C 1.38000 * 119.95133 * 179.97438 * 14 13 12 16 16 C 1.38498 * 120.11789 * 0.02562 * 15 14 13 17 17 F 1.35097 * 119.91261 * 180.02562 * 16 15 14 18 18 C 1.38726 * 120.17106 * 0.02562 * 16 15 14 19 19 F 1.35101 * 119.97665 * 180.02562 * 18 16 15 20 20 C 1.38199 * 120.05027 * 359.97438 * 18 16 15 21 21 C 1.40779 * 108.11382 * 0.22937 * 12 11 10 22 22 C 1.35731 * 107.80096 * 359.62071 * 21 12 11 23 23 O 1.35757 * 126.12018 * 180.11395 * 22 21 12 24 24 H 0.96997 * 120.00264 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47109 * 60.00380 * 9 7 2 26 26 H 1.09001 * 109.47334 * 300.00363 * 9 7 2 27 27 H 1.07997 * 120.02452 * 359.96504 * 14 13 12 28 28 H 1.07995 * 119.93914 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.06217 * 180.27790 * 20 18 16 30 30 H 1.08008 * 126.09874 * 179.75482 * 21 12 11 31 31 H 0.96700 * 114.00546 * 270.30166 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2839 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 7 2.7376 -4.2383 1.1329 12 6 3.5520 -5.1913 0.7328 13 6 4.3288 -6.0998 1.6127 14 6 5.1589 -7.0705 1.0559 15 6 5.8803 -7.9134 1.8766 16 6 5.7802 -7.7966 3.2530 17 9 6.4887 -8.6236 4.0526 18 6 4.9544 -6.8326 3.8128 19 9 4.8602 -6.7218 5.1559 20 6 4.2289 -5.9848 2.9974 21 6 3.5629 -5.1954 -0.6749 22 6 2.7213 -4.2187 -1.0992 23 8 2.4507 -3.9010 -2.3911 24 1 -0.4850 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 5.2376 -7.1633 -0.0172 28 1 6.5233 -8.6659 1.4448 29 1 3.5894 -5.2313 3.4330 30 1 4.1367 -5.8591 -1.3050 31 1 3.0440 -3.2352 -2.7650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245945683.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:10 Heat of formation + Delta-G solvation = -34.852430 kcal Electronic energy + Delta-G solvation = -20383.429123 eV Core-core repulsion = 16688.808372 eV Total energy + Delta-G solvation = -3694.620751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.49314 -48.56445 -40.80255 -38.78504 -36.69140 -33.93563 -32.27154 -31.04984 -30.12938 -28.69014 -26.92587 -24.03105 -23.16232 -22.59662 -20.59205 -20.05384 -18.21021 -17.62369 -16.97671 -16.91283 -16.55688 -16.33260 -15.78594 -14.98554 -14.91030 -14.57620 -14.31215 -14.20978 -14.02872 -13.65847 -13.43397 -12.95495 -12.64127 -12.24781 -11.99206 -11.79081 -11.53178 -11.25608 -11.03526 -10.89775 -10.36967 -10.10481 -9.99150 -9.31933 -9.02621 -8.74939 -8.25466 -7.88402 -6.36967 -4.46486 0.64779 0.94121 2.29952 2.81086 3.09517 3.15048 3.20574 3.24526 3.69851 3.73122 4.17581 4.19925 4.33146 4.49028 4.81104 4.89048 4.98054 5.05890 5.45003 5.66812 5.72600 5.80130 5.85554 5.93506 6.18293 6.41782 6.63769 6.70857 6.88819 7.07322 7.22631 7.56934 7.73844 8.05165 8.23861 8.58661 9.20771 10.70873 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.003961 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.988850 B = 7066.968811 C = 7802.895207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.323 5.323 11 N -0.256 5.256 12 C 0.076 3.924 13 C 0.031 3.969 14 C -0.084 4.084 15 C -0.124 4.124 16 C 0.059 3.941 17 F -0.133 7.133 18 C 0.069 3.931 19 F -0.130 7.130 20 C -0.106 4.106 21 C -0.283 4.283 22 C 0.264 3.736 23 O -0.467 6.467 24 H 0.270 0.730 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.015 -12.776 0.085 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.134 3.866 10 N -0.114 5.114 11 N -0.085 5.085 12 C -0.085 4.085 13 C 0.029 3.971 14 C -0.104 4.104 15 C -0.143 4.143 16 C 0.038 3.962 17 F -0.111 7.111 18 C 0.049 3.951 19 F -0.108 7.108 20 C -0.126 4.126 21 C -0.314 4.314 22 C 0.092 3.908 23 O -0.270 6.270 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.163 0.837 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.165 0.835 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.756 -12.334 1.087 15.164 hybrid contribution 1.091 0.935 -0.439 1.502 sum 9.847 -11.399 0.648 15.077 Atomic orbital electron populations 1.69904 1.06101 1.28033 1.48407 1.24929 0.94986 0.99506 0.94157 0.86382 0.79433 0.81710 0.78970 1.19927 1.20817 1.19858 1.21208 0.93586 0.89556 1.54013 0.91828 1.19829 0.86279 0.80199 1.00310 1.50181 1.33599 1.25887 1.01764 1.77583 1.13272 1.09481 1.08150 1.19983 0.99539 0.96986 0.91971 1.17678 0.94943 0.93814 0.90654 1.21069 0.94855 0.93561 1.00879 1.20934 1.01698 1.01456 0.90232 1.17736 0.96635 0.92670 0.89166 1.91508 1.76371 1.69926 1.73333 1.17533 1.00867 0.98723 0.77953 1.91528 1.95074 1.95436 1.28767 1.21237 0.99432 0.99150 0.92794 1.20857 1.09018 1.07604 0.93925 1.18792 0.96063 0.94719 0.81182 1.84777 1.60223 1.62734 1.19307 0.91990 0.92356 0.92584 0.83669 0.83494 0.82769 0.83507 0.74494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 13.29 55.43 0.74 -23.66 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 20.30 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.55 -14.33 9.39 -34.44 -0.32 -14.66 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.25 6.22 6.14 -5.19 -0.03 6.19 16 10 N -0.32 -7.12 3.62 -62.56 -0.23 -7.35 16 11 N -0.26 -5.39 12.22 33.41 0.41 -4.98 16 12 C 0.08 1.32 6.98 -82.81 -0.58 0.74 16 13 C 0.03 0.44 5.88 -104.90 -0.62 -0.17 16 14 C -0.08 -0.90 9.57 -39.26 -0.38 -1.28 16 15 C -0.12 -1.22 10.01 -39.57 -0.40 -1.62 16 16 C 0.06 0.71 7.31 -39.31 -0.29 0.42 16 17 F -0.13 -1.66 17.17 2.25 0.04 -1.63 16 18 C 0.07 0.94 7.30 -39.42 -0.29 0.65 16 19 F -0.13 -1.86 17.18 2.25 0.04 -1.82 16 20 C -0.11 -1.51 9.66 -39.20 -0.38 -1.89 16 21 C -0.28 -4.63 10.20 -39.52 -0.40 -5.04 16 22 C 0.26 5.00 7.98 -16.71 -0.13 4.87 16 23 O -0.47 -7.83 13.58 -18.98 -0.26 -8.09 16 24 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.15 1.22 7.02 -52.49 -0.37 0.85 16 28 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.15 2.30 7.84 -52.49 -0.41 1.89 16 30 H 0.15 1.85 7.32 -52.48 -0.38 1.47 16 31 H 0.40 4.95 9.06 45.56 0.41 5.37 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -29.46 295.49 -5.30 -34.77 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -1.56 Total: 3.10 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.91 Total: -10.07 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.92 Total: -35.99 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.26 Total: -8.09 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.46 -5.30 -34.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245945683.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.084 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds