Wall clock time and date at job start Tue Mar 31 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99518 * 2 1 4 4 H 1.48507 * 109.46979 * 240.00305 * 3 2 1 5 5 H 1.48499 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46944 * 120.00815 * 3 2 1 7 7 C 1.37874 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00418 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99691 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47065 * 180.02562 * 9 7 2 11 11 N 1.40060 * 125.97791 * 90.02410 * 10 9 7 12 12 C 1.31594 * 108.27821 * 179.97438 * 11 10 9 13 13 C 1.48420 * 125.94024 * 179.97438 * 12 11 10 14 14 C 1.39339 * 120.08463 * 180.02562 * 13 12 11 15 15 C 1.38000 * 119.95133 * 179.97438 * 14 13 12 16 16 C 1.38498 * 120.11789 * 0.02562 * 15 14 13 17 17 F 1.35097 * 119.91261 * 180.02562 * 16 15 14 18 18 C 1.38726 * 120.17106 * 0.02562 * 16 15 14 19 19 F 1.35101 * 119.97665 * 180.02562 * 18 16 15 20 20 C 1.38199 * 120.05027 * 359.97438 * 18 16 15 21 21 C 1.40779 * 108.11382 * 0.22937 * 12 11 10 22 22 C 1.35731 * 107.80096 * 359.62071 * 21 12 11 23 23 O 1.35757 * 126.12018 * 180.11395 * 22 21 12 24 24 H 0.96997 * 120.00264 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47109 * 60.00380 * 9 7 2 26 26 H 1.09001 * 109.47334 * 300.00363 * 9 7 2 27 27 H 1.07997 * 120.02452 * 359.96504 * 14 13 12 28 28 H 1.07995 * 119.93914 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.06217 * 180.27790 * 20 18 16 30 30 H 1.08008 * 126.09874 * 179.75482 * 21 12 11 31 31 H 0.96700 * 114.00546 * 270.30166 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2839 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 7 2.7376 -4.2383 1.1329 12 6 3.5520 -5.1913 0.7328 13 6 4.3288 -6.0998 1.6127 14 6 5.1589 -7.0705 1.0559 15 6 5.8803 -7.9134 1.8766 16 6 5.7802 -7.7966 3.2530 17 9 6.4887 -8.6236 4.0526 18 6 4.9544 -6.8326 3.8128 19 9 4.8602 -6.7218 5.1559 20 6 4.2289 -5.9848 2.9974 21 6 3.5629 -5.1954 -0.6749 22 6 2.7213 -4.2187 -1.0992 23 8 2.4507 -3.9010 -2.3911 24 1 -0.4850 0.8400 0.0004 25 1 0.6243 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 5.2376 -7.1633 -0.0172 28 1 6.5233 -8.6659 1.4448 29 1 3.5894 -5.2313 3.4330 30 1 4.1367 -5.8591 -1.3050 31 1 3.0440 -3.2352 -2.7650 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245945683.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:10 Heat of formation + Delta-G solvation = -54.560305 kcal Electronic energy + Delta-G solvation = -20384.283720 eV Core-core repulsion = 16688.808372 eV Total energy + Delta-G solvation = -3695.475348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.51742 -49.59473 -42.21507 -39.81364 -38.02627 -35.78814 -33.85799 -32.07565 -31.43840 -30.08403 -28.63678 -25.55900 -24.20224 -24.00274 -21.99971 -21.34370 -19.48629 -18.90410 -18.58389 -18.02920 -17.84700 -17.35834 -17.22981 -16.59966 -16.02028 -15.82561 -15.57127 -15.49909 -15.09194 -14.96103 -14.84500 -14.30029 -14.02545 -13.65685 -13.42117 -13.19607 -13.01850 -12.72070 -12.62402 -12.30177 -12.14740 -11.89495 -11.41009 -10.77031 -10.63990 -10.05310 -9.63493 -9.22342 -8.37402 -6.56251 -0.38887 -0.00724 0.89089 1.37119 1.39590 1.47289 1.56868 1.69218 2.30981 2.62262 2.71138 2.93441 3.02160 3.29643 3.51375 3.57427 3.90502 4.05564 4.28244 4.55577 4.58341 4.76056 4.84483 4.84970 4.88695 5.01179 5.08909 5.37081 5.45845 5.64739 5.72235 5.73720 5.83115 6.49037 6.72128 6.83101 7.16096 8.69750 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023097 B = 0.003961 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.988850 B = 7066.968811 C = 7802.895207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.021 3.979 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.058 0.942 9 C 0.269 3.731 10 N -0.358 5.358 11 N -0.306 5.306 12 C 0.088 3.912 13 C 0.008 3.992 14 C -0.060 4.060 15 C -0.103 4.103 16 C 0.062 3.938 17 F -0.134 7.134 18 C 0.051 3.949 19 F -0.141 7.141 20 C -0.116 4.116 21 C -0.266 4.266 22 C 0.252 3.748 23 O -0.471 6.471 24 H 0.274 0.726 25 H 0.043 0.957 26 H 0.023 0.977 27 H 0.182 0.818 28 H 0.191 0.809 29 H 0.133 0.867 30 H 0.195 0.805 31 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.701 -14.325 -1.438 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.595 4.595 8 H 0.076 0.924 9 C 0.150 3.850 10 N -0.149 5.149 11 N -0.134 5.134 12 C -0.073 4.073 13 C 0.006 3.994 14 C -0.079 4.079 15 C -0.121 4.121 16 C 0.042 3.958 17 F -0.113 7.113 18 C 0.031 3.969 19 F -0.120 7.120 20 C -0.136 4.136 21 C -0.295 4.295 22 C 0.081 3.919 23 O -0.277 6.277 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.200 0.800 28 H 0.208 0.792 29 H 0.151 0.849 30 H 0.212 0.788 31 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 11.459 -13.894 -0.454 18.016 hybrid contribution 0.337 1.243 0.062 1.290 sum 11.796 -12.651 -0.392 17.302 Atomic orbital electron populations 1.70012 1.07597 1.29065 1.49106 1.25810 0.95777 1.02962 0.93450 0.85349 0.78231 0.77373 0.79207 1.18463 1.20097 1.20002 1.21408 0.93361 0.90649 1.54083 0.92425 1.19226 0.86526 0.81324 0.97888 1.49901 1.35044 1.26728 1.03219 1.77540 1.15556 1.11632 1.08673 1.20585 0.97804 0.95669 0.93267 1.17744 0.96589 0.95113 0.89981 1.21430 0.92449 0.91321 1.02726 1.21360 1.00841 1.01271 0.88675 1.17971 0.95813 0.91835 0.90206 1.91512 1.76258 1.69800 1.73688 1.17646 1.02008 0.99745 0.77482 1.91493 1.95280 1.95622 1.29591 1.21091 0.99782 0.99268 0.93470 1.21324 1.07849 1.06755 0.93596 1.19272 0.96238 0.95117 0.81227 1.84741 1.61186 1.63452 1.18305 0.91707 0.93918 0.95846 0.80046 0.79178 0.84934 0.78780 0.72456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.96 13.29 21.45 0.28 -51.68 16 2 C 0.02 1.14 5.46 84.65 0.46 1.60 16 3 Si 0.98 41.82 29.54 68.60 2.03 43.84 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.56 -30.24 9.39 25.60 0.24 -30.00 16 8 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.27 14.11 6.14 85.63 0.53 14.64 16 10 N -0.36 -16.29 3.62 -462.82 -1.67 -17.96 16 11 N -0.31 -13.31 12.22 -48.21 -0.59 -13.90 16 12 C 0.09 2.99 6.98 42.52 0.30 3.29 16 13 C 0.01 0.21 5.88 -20.04 -0.12 0.09 16 14 C -0.06 -1.00 9.57 22.48 0.22 -0.78 16 15 C -0.10 -1.51 10.01 22.28 0.22 -1.28 16 16 C 0.06 1.34 7.31 22.45 0.16 1.50 16 17 F -0.13 -3.00 17.17 44.97 0.77 -2.23 16 18 C 0.05 1.35 7.30 22.38 0.16 1.52 16 19 F -0.14 -4.12 17.18 44.97 0.77 -3.34 16 20 C -0.12 -3.31 9.66 22.52 0.22 -3.10 16 21 C -0.27 -7.97 10.20 22.31 0.23 -7.74 16 22 C 0.25 9.37 7.98 83.50 0.67 10.04 16 23 O -0.47 -15.34 13.58 -90.84 -1.23 -16.57 16 24 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.18 1.76 7.02 -2.91 -0.02 1.74 16 28 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 29 H 0.13 4.29 7.84 -2.91 -0.02 4.26 16 30 H 0.20 3.80 7.32 -2.91 -0.02 3.78 16 31 H 0.42 9.86 9.06 -74.06 -0.67 9.19 16 Total: -1.00 -67.25 295.49 4.17 -63.08 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.53 Total: 9.00 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 3.28 Total: -10.23 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.98 Total: -83.54 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.23 Total: -16.57 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.54 Total: -5.57 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -67.25 4.17 -63.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245945683.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.516 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds