Wall clock time and date at job start Tue Mar 31 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38498 * 119.90032 * 2 1 4 4 F 1.35093 * 119.95655 * 0.02562 * 3 2 1 5 5 C 1.38272 * 120.09278 * 179.97438 * 3 2 1 6 6 C 1.39295 * 119.90083 * 0.02562 * 5 3 2 7 7 C 1.48429 * 120.09220 * 180.02562 * 6 5 3 8 8 N 1.30759 * 126.41563 * 359.97438 * 7 6 5 9 9 O 1.21292 * 110.10181 * 179.97438 * 8 7 6 10 10 C 1.33669 * 110.02240 * 0.02562 * 9 8 7 11 11 C 1.50697 * 126.43367 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47266 * 270.02279 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47163 * 59.99902 * 16 14 12 18 18 H 1.48495 * 109.47159 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47290 * 299.99897 * 16 14 12 20 20 N 1.30972 * 107.12596 * 0.22473 * 10 9 8 21 21 C 1.39296 * 119.81377 * 0.27728 * 6 5 3 22 22 C 1.38263 * 119.90088 * 359.42225 * 21 6 5 23 23 F 1.35101 * 119.95499 * 180.32092 * 22 21 6 24 24 H 1.09001 * 109.47260 * 90.00128 * 1 2 3 25 25 H 1.09003 * 109.47149 * 209.99859 * 1 2 3 26 26 H 1.09000 * 109.47466 * 330.00164 * 1 2 3 27 27 H 1.07994 * 120.04498 * 180.02562 * 5 3 2 28 28 H 1.09004 * 109.47205 * 150.02372 * 11 10 9 29 29 H 1.08997 * 109.47395 * 30.02865 * 11 10 9 30 30 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 31 31 H 1.08001 * 120.05274 * 179.70683 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.2006 0.0000 4 9 1.5190 2.3689 0.0005 5 6 3.5801 1.2053 0.0005 6 6 4.2785 0.0001 0.0005 7 6 5.7628 0.0001 0.0017 8 7 6.5390 1.0524 0.0023 9 8 7.7031 0.7117 0.0037 10 6 7.7896 -0.6222 0.0036 11 6 9.0574 -1.4368 0.0045 12 6 9.4815 -1.7078 -1.4160 13 1 8.8921 -1.3276 -2.2373 14 6 10.6219 -2.4409 -1.6671 15 7 11.3426 -2.8992 -0.6669 16 14 11.1480 -2.7761 -3.4278 17 1 11.3886 -1.4879 -4.1263 18 1 12.3972 -3.5790 -3.4269 19 1 10.0767 -3.5274 -4.1301 20 7 6.5655 -1.0880 -0.0029 21 6 3.5801 -1.2051 -0.0059 22 6 2.1975 -1.2005 -0.0001 23 9 1.5190 -2.3688 0.0003 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 4.1176 2.1419 0.0010 28 1 8.8814 -2.3823 0.5177 29 1 9.8436 -0.8849 0.5195 30 1 12.1446 -3.4153 -0.8436 31 1 4.1177 -2.1418 -0.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247444495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:47 Heat of formation + Delta-G solvation = -25.509673 kcal Electronic energy + Delta-G solvation = -20349.306057 eV Core-core repulsion = 16655.090439 eV Total energy + Delta-G solvation = -3694.215618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.18275 -50.16475 -46.52293 -40.27067 -36.99403 -35.88090 -34.45141 -33.26479 -31.68660 -30.38847 -28.66148 -26.08645 -25.10262 -24.26568 -23.40192 -22.11983 -19.48764 -19.33153 -18.53125 -18.34810 -17.99541 -17.28714 -16.98894 -16.86421 -16.58460 -16.44850 -15.93042 -15.27184 -15.10484 -14.45968 -14.20948 -14.14910 -14.02464 -13.78720 -13.70328 -13.27790 -12.98831 -12.78963 -12.70301 -12.61098 -12.47796 -12.19966 -12.02157 -11.86228 -10.98176 -10.66683 -10.02877 -9.82822 -8.30882 -6.44185 -0.75697 -0.28194 0.27298 1.21770 1.45887 1.46306 1.54977 1.87546 2.16243 2.20869 2.40240 2.73234 2.78195 3.05519 3.30512 3.45206 3.47623 3.77510 3.88911 4.26510 4.37055 4.53524 4.64007 4.64443 4.72735 4.77688 4.91669 4.99702 5.03595 5.09907 5.20035 5.49696 5.58731 5.86980 6.60063 7.06873 7.24793 8.79615 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.003665 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.186544 B = 7638.325017 C = 8125.167477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.128 4.128 3 C 0.128 3.872 4 F -0.120 7.120 5 C -0.122 4.122 6 C 0.025 3.975 7 C 0.197 3.803 8 N -0.394 5.394 9 O 0.065 5.935 10 C 0.241 3.759 11 C 0.108 3.892 12 C -0.546 4.546 13 H 0.054 0.946 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.272 1.272 20 N -0.507 5.507 21 C -0.117 4.117 22 C 0.127 3.873 23 F -0.122 7.122 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.273 0.727 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.122 5.561 1.648 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.130 4.130 3 C 0.109 3.891 4 F -0.099 7.099 5 C -0.143 4.143 6 C 0.023 3.977 7 C -0.073 4.073 8 N -0.106 5.106 9 O 0.009 5.991 10 C 0.023 3.977 11 C 0.070 3.930 12 C -0.584 4.584 13 H 0.073 0.927 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.792 3.208 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.197 1.197 20 N -0.241 5.241 21 C -0.138 4.138 22 C 0.107 3.893 23 F -0.100 7.100 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.171 0.829 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.575 5.970 1.708 20.536 hybrid contribution 0.782 -0.343 -0.685 1.095 sum -18.792 5.626 1.023 19.643 Atomic orbital electron populations 1.20851 0.86432 1.05182 1.04763 1.20230 0.99758 0.89992 1.03043 1.16692 0.88402 0.81225 1.02804 1.91539 1.79576 1.45075 1.93685 1.21151 0.92808 0.98824 1.01535 1.16677 0.84619 0.93634 1.02811 1.24050 0.96946 0.84484 1.01791 1.74743 0.89637 1.23480 1.22711 1.85252 1.21897 1.25745 1.66223 1.29732 0.97564 0.80924 0.89484 1.17983 0.83010 0.92851 0.99185 1.20994 1.10340 1.36256 0.90858 0.92729 1.25700 0.95594 0.94466 1.01958 1.69992 1.16545 1.35758 1.32959 0.85451 0.77809 0.78639 0.78920 1.19287 1.20037 1.19668 1.72048 1.00081 1.28604 1.23378 1.21211 0.92722 0.99246 1.00643 1.16764 0.88435 0.81299 1.02766 1.91541 1.79565 1.45233 1.93668 0.88640 0.89376 0.89230 0.82944 0.92271 0.92409 0.91782 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.65 71.23 0.69 -0.83 16 2 C -0.13 -2.49 5.89 -19.74 -0.12 -2.61 16 3 C 0.13 2.74 7.23 22.34 0.16 2.90 16 4 F -0.12 -2.42 16.46 44.97 0.74 -1.68 16 5 C -0.12 -3.09 9.67 22.53 0.22 -2.87 16 6 C 0.02 0.74 5.87 -20.05 -0.12 0.62 16 7 C 0.20 7.43 7.80 137.30 1.07 8.50 16 8 N -0.39 -15.33 11.86 -59.12 -0.70 -16.03 16 9 O 0.06 2.69 11.29 74.61 0.84 3.53 16 10 C 0.24 10.61 7.69 88.36 0.68 11.29 16 11 C 0.11 5.23 5.60 29.10 0.16 5.39 16 12 C -0.55 -28.80 9.09 25.60 0.23 -28.57 16 13 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 14 C 0.02 1.26 5.46 84.66 0.46 1.72 16 15 N -0.91 -49.88 13.29 21.45 0.28 -49.60 16 16 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 20 N -0.51 -21.46 11.26 -302.49 -3.41 -24.87 16 21 C -0.12 -3.18 9.68 22.53 0.22 -2.96 16 22 C 0.13 2.86 7.23 22.34 0.16 3.02 16 23 F -0.12 -2.67 16.46 44.97 0.74 -1.93 16 24 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.09 1.03 7.63 -2.39 -0.02 1.01 16 26 H 0.09 1.00 7.63 -2.39 -0.02 0.98 16 27 H 0.15 3.75 7.87 -2.91 -0.02 3.73 16 28 H 0.06 2.97 8.14 -2.38 -0.02 2.95 16 29 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.15 4.28 7.87 -2.91 -0.02 4.26 16 Total: -1.00 -56.13 293.81 5.54 -50.59 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: 1.19 Total: 0.99 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 3.82 Total: -4.40 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.82 Total: -90.49 kcal Atomic # 8 Polarization: 2.69 SS G_CDS: 0.84 Total: 3.53 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 1.48 Total: -3.61 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -56.13 5.54 -50.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.082 kcal (2) G-P(sol) polarization free energy of solvation -56.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds