Wall clock time and date at job start Tue Mar 31 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38017 * 120.02304 * 2 1 4 4 C 1.38484 * 120.11605 * 180.24940 * 3 2 1 5 5 F 1.35104 * 119.91150 * 179.72082 * 4 3 2 6 6 C 1.38789 * 120.17017 * 359.45523 * 4 3 2 7 7 F 1.35108 * 119.97319 * 180.27132 * 6 4 3 8 8 C 1.38131 * 120.05112 * 0.24473 * 6 4 3 9 9 C 1.39321 * 120.02628 * 179.67585 * 2 1 3 10 10 C 1.48388 * 120.08322 * 0.02562 * 9 2 1 11 11 N 1.30774 * 126.41694 * 0.04379 * 10 9 2 12 12 O 1.21284 * 110.09707 * 179.97438 * 11 10 9 13 13 C 1.33670 * 110.02888 * 0.02562 * 12 11 10 14 14 C 1.50705 * 126.43416 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.46989 * 269.97195 * 14 13 12 16 16 H 1.08004 * 119.99950 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00024 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00011 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47106 * 59.99938 * 19 17 15 21 21 H 1.48504 * 109.47065 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47293 * 299.99502 * 19 17 15 23 23 N 1.30972 * 107.12769 * 359.74617 * 13 12 11 24 24 H 1.09004 * 109.46898 * 270.31917 * 1 2 3 25 25 H 1.08998 * 109.46796 * 30.31924 * 1 2 3 26 26 H 1.08997 * 109.46919 * 150.31999 * 1 2 3 27 27 H 1.07993 * 119.94356 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.06053 * 180.02562 * 8 6 4 29 29 H 1.08994 * 109.47368 * 29.97184 * 14 13 12 30 30 H 1.09001 * 109.46930 * 149.97201 * 14 13 12 31 31 H 0.97001 * 119.99569 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1950 0.0000 4 6 3.5824 1.1972 -0.0052 5 9 4.2542 2.3694 -0.0109 6 6 4.2819 -0.0015 0.0009 7 9 5.6330 0.0054 0.0014 8 6 3.5979 -1.2015 0.0072 9 6 2.2042 -1.2062 0.0068 10 6 1.4647 -2.4927 0.0135 11 7 0.1654 -2.6413 0.0130 12 8 -0.1191 -3.8203 0.0191 13 6 0.9942 -4.5600 0.0247 14 6 1.0688 -6.0652 0.0325 15 6 1.0919 -6.5596 1.4560 16 1 1.0566 -5.8543 2.2732 17 6 1.1592 -7.9121 1.7150 18 7 1.2037 -8.7707 0.7197 19 14 1.1871 -8.5250 3.4793 20 1 -0.0498 -8.0876 4.1749 21 1 1.2607 -10.0082 3.4870 22 1 2.3722 -7.9665 4.1786 23 7 2.0081 -3.7310 0.0161 24 1 -0.3633 0.0057 1.0277 25 1 -0.3633 0.8871 -0.5188 26 1 -0.3633 -0.8928 -0.5088 27 1 1.6571 2.1299 -0.0004 28 1 4.1420 -2.1344 0.0124 29 1 0.1985 -6.4747 -0.4802 30 1 1.9763 -6.3866 -0.4786 31 1 1.2506 -9.7223 0.9020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247444615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:45 Heat of formation + Delta-G solvation = -17.699190 kcal Electronic energy + Delta-G solvation = -20566.785179 eV Core-core repulsion = 16872.908249 eV Total energy + Delta-G solvation = -3693.876930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.64454 -49.71792 -46.44202 -40.50950 -36.86576 -35.78813 -34.30181 -33.42493 -31.82015 -30.28342 -28.12401 -26.13084 -25.66991 -23.80799 -23.57487 -21.95552 -19.33647 -19.21903 -18.60535 -18.34541 -18.18276 -17.61504 -17.48642 -16.69573 -16.13109 -16.09521 -15.52790 -15.26316 -15.08602 -14.81366 -14.63155 -14.43895 -14.04958 -13.50830 -13.38718 -13.29958 -12.95016 -12.71235 -12.56679 -12.49992 -12.42203 -12.14536 -11.88460 -11.78651 -10.97665 -10.66215 -10.13359 -9.68363 -8.30373 -6.43560 -0.73955 -0.23516 0.31059 1.26730 1.45819 1.46443 1.54926 1.91779 2.22920 2.30408 2.40741 2.60367 2.89378 3.06637 3.15775 3.44012 3.63962 3.80618 3.96531 4.39650 4.44384 4.54616 4.66215 4.72706 4.75153 4.75846 4.89026 5.10245 5.17431 5.19436 5.34430 5.55020 5.59338 5.88029 6.60816 7.13653 7.25447 8.80137 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025142 B = 0.003918 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.426808 B = 7145.237777 C = 7740.469589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.024 4.024 3 C -0.111 4.111 4 C 0.091 3.909 5 F -0.125 7.125 6 C 0.050 3.950 7 F -0.132 7.132 8 C -0.083 4.083 9 C -0.017 4.017 10 C 0.201 3.799 11 N -0.380 5.380 12 O 0.056 5.944 13 C 0.242 3.758 14 C 0.108 3.892 15 C -0.545 4.545 16 H 0.054 0.946 17 C 0.024 3.976 18 N -0.915 5.915 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.273 1.273 23 N -0.514 5.514 24 H 0.085 0.915 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.192 0.808 28 H 0.150 0.850 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 18.634 -1.807 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.027 4.027 3 C -0.129 4.129 4 C 0.070 3.930 5 F -0.103 7.103 6 C 0.030 3.970 7 F -0.111 7.111 8 C -0.104 4.104 9 C -0.019 4.019 10 C -0.069 4.069 11 N -0.095 5.095 12 O 0.003 5.997 13 C 0.024 3.976 14 C 0.069 3.931 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.198 1.198 23 N -0.248 5.248 24 H 0.104 0.896 25 H 0.124 0.876 26 H 0.097 0.903 27 H 0.210 0.790 28 H 0.167 0.833 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.151 19.198 -1.882 19.291 hybrid contribution 0.701 -0.847 0.719 1.314 sum 0.852 18.351 -1.163 18.408 Atomic orbital electron populations 1.21237 0.87812 1.05281 1.04209 1.20080 0.98308 0.89889 0.94379 1.21127 0.90101 1.00275 1.01374 1.17854 0.91080 0.79719 1.04355 1.91548 1.80430 1.44616 1.93703 1.17421 0.77524 0.93176 1.08843 1.91529 1.28007 1.97231 1.94288 1.21006 0.93302 0.97820 0.98294 1.17181 0.91347 0.87615 1.05776 1.24044 0.87630 0.93686 1.01527 1.74847 1.15690 0.95973 1.22956 1.85267 1.36017 1.12134 1.66248 1.29612 0.78871 0.99652 0.89508 1.17956 1.00434 0.75596 0.99102 1.20993 1.53897 0.92558 0.90874 0.92723 1.25693 0.93681 0.96394 1.01943 1.69994 1.49108 1.03109 1.33107 0.85461 0.79058 0.77375 0.78986 1.19153 1.20085 1.19802 1.72054 1.30157 0.99038 1.23593 0.89645 0.87608 0.90263 0.79050 0.83261 0.92462 0.92568 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.19 71.24 0.65 -1.83 16 2 C -0.02 -0.53 5.91 -19.66 -0.12 -0.65 16 3 C -0.11 -1.89 9.67 22.28 0.22 -1.67 16 4 C 0.09 1.93 7.31 22.46 0.16 2.09 16 5 F -0.12 -2.65 17.18 44.97 0.77 -1.87 16 6 C 0.05 1.27 7.30 22.38 0.16 1.44 16 7 F -0.13 -3.55 17.18 44.97 0.77 -2.77 16 8 C -0.08 -2.34 9.68 22.52 0.22 -2.12 16 9 C -0.02 -0.50 5.88 -20.04 -0.12 -0.62 16 10 C 0.20 7.29 7.67 137.28 1.05 8.34 16 11 N -0.38 -13.77 8.71 -59.14 -0.52 -14.29 16 12 O 0.06 2.25 11.29 74.61 0.84 3.09 16 13 C 0.24 10.48 7.69 88.36 0.68 11.16 16 14 C 0.11 5.18 5.60 29.10 0.16 5.35 16 15 C -0.54 -28.65 9.09 25.60 0.23 -28.42 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.02 1.25 5.46 84.65 0.46 1.72 16 18 N -0.92 -49.94 13.29 21.45 0.28 -49.65 16 19 Si 0.97 41.31 29.54 68.60 2.03 43.33 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 N -0.51 -21.58 11.26 -302.51 -3.41 -24.98 16 24 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.11 1.29 8.09 -2.39 -0.02 1.27 16 26 H 0.08 1.97 5.17 -2.39 -0.01 1.96 16 27 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.15 4.46 7.87 -2.91 -0.02 4.44 16 29 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -57.31 289.85 5.74 -51.57 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: 1.19 Total: 0.79 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 3.77 Total: -5.21 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -3.64 Total: -88.92 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.84 Total: 3.09 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 1.54 Total: -4.65 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -57.31 5.74 -51.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.868 kcal (2) G-P(sol) polarization free energy of solvation -57.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds