Wall clock time and date at job start Tue Mar 31 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 119.93815 * 2 1 4 4 C 1.38535 * 120.24788 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.93554 * 179.72331 * 4 3 2 6 6 C 1.38230 * 120.12635 * 359.97438 * 4 3 2 7 7 C 1.39299 * 119.87777 * 0.02562 * 6 4 3 8 8 C 1.48364 * 120.12277 * 180.02562 * 7 6 4 9 9 N 1.30787 * 126.41502 * 180.02562 * 8 7 6 10 10 O 1.21292 * 110.09484 * 180.02562 * 9 8 7 11 11 C 1.33672 * 110.02852 * 0.02562 * 10 9 8 12 12 C 1.50698 * 126.43379 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46996 * 269.96955 * 12 11 10 14 14 H 1.08001 * 119.99920 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00191 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00043 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00179 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47285 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47129 * 120.00057 * 17 15 13 20 20 H 1.48504 * 109.47480 * 240.00119 * 17 15 13 21 21 N 1.30970 * 107.13036 * 359.72521 * 11 10 9 22 22 C 1.38252 * 119.93926 * 180.02562 * 2 1 3 23 23 F 1.35104 * 120.06432 * 359.96018 * 22 2 1 24 24 H 1.09001 * 109.47310 * 90.00021 * 1 2 3 25 25 H 1.09003 * 109.47461 * 210.00184 * 1 2 3 26 26 H 1.08999 * 109.47399 * 330.00132 * 1 2 3 27 27 H 1.08001 * 119.88082 * 359.97438 * 3 2 1 28 28 H 1.08003 * 120.06050 * 179.97438 * 6 4 3 29 29 H 1.08997 * 109.47596 * 29.96860 * 12 11 10 30 30 H 1.09000 * 109.47296 * 149.97688 * 12 11 10 31 31 H 0.97003 * 120.00436 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1981 0.0000 4 6 3.5823 1.2056 -0.0005 5 9 4.2501 2.3799 -0.0062 6 6 4.2825 0.0137 -0.0005 7 6 3.5926 -1.1964 -0.0005 8 6 4.3387 -2.4788 0.0000 9 7 3.8195 -3.6792 -0.0004 10 8 4.6994 -4.5139 0.0008 11 6 5.8959 -3.9178 0.0027 12 6 7.2376 -4.6039 0.0040 13 6 7.6834 -4.8328 1.4254 14 1 7.0574 -4.5136 2.2456 15 6 8.8897 -5.4504 1.6786 16 7 9.6517 -5.8394 0.6798 17 14 9.4419 -5.7346 3.4403 18 1 8.4123 -5.2093 4.3726 19 1 9.6236 -7.1900 3.6734 20 1 10.7284 -5.0312 3.6755 21 7 5.6831 -2.6256 -0.0034 22 6 2.1970 -1.1980 -0.0005 23 9 1.5215 -2.3681 -0.0002 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.6540 2.1317 -0.0004 28 1 5.3625 0.0208 -0.0014 29 1 7.1565 -5.5617 -0.5099 30 1 7.9669 -3.9769 -0.5088 31 1 10.5007 -6.2737 0.8579 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247444841.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:50 Heat of formation + Delta-G solvation = -25.325052 kcal Electronic energy + Delta-G solvation = -20604.643668 eV Core-core repulsion = 16910.436056 eV Total energy + Delta-G solvation = -3694.207612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.13098 -50.05395 -46.54421 -40.22853 -37.06908 -35.91170 -34.38840 -33.46378 -31.44984 -30.34304 -28.25543 -26.15039 -26.02464 -24.12282 -22.81492 -22.18926 -19.39136 -18.93955 -18.65416 -18.40304 -18.26482 -17.84207 -17.12179 -16.70715 -16.50221 -16.11208 -15.44577 -15.21062 -14.89393 -14.49799 -14.27830 -14.18143 -14.16938 -13.88864 -13.58939 -13.27284 -12.98757 -12.91757 -12.64967 -12.46547 -12.41223 -12.20409 -12.06007 -11.86453 -11.04890 -10.69235 -10.03362 -9.70736 -8.33000 -6.46473 -0.72378 -0.25401 0.27201 1.23703 1.42153 1.44214 1.55927 1.87144 2.19523 2.24455 2.38850 2.70245 2.92836 3.02975 3.10439 3.52148 3.62354 3.81913 3.95112 4.25518 4.46816 4.62188 4.65198 4.74392 4.78795 4.83903 4.86559 5.03829 5.06660 5.15557 5.17535 5.56281 5.56834 5.84564 6.57905 7.05031 7.22679 8.78065 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.004069 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.193837 B = 6878.831228 C = 7483.315863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.089 4.089 4 C 0.097 3.903 5 F -0.129 7.129 6 C -0.100 4.100 7 C -0.039 4.039 8 C 0.191 3.809 9 N -0.392 5.392 10 O 0.064 5.936 11 C 0.238 3.762 12 C 0.109 3.891 13 C -0.545 4.545 14 H 0.052 0.948 15 C 0.024 3.976 16 N -0.914 5.914 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.270 1.270 20 H -0.273 1.273 21 N -0.506 5.506 22 C 0.102 3.898 23 F -0.128 7.128 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.194 0.806 28 H 0.147 0.853 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 14.315 -1.715 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.108 4.108 4 C 0.077 3.923 5 F -0.107 7.107 6 C -0.120 4.120 7 C -0.042 4.042 8 C -0.079 4.079 9 N -0.104 5.104 10 O 0.008 5.992 11 C 0.020 3.980 12 C 0.070 3.930 13 C -0.584 4.584 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.552 5.552 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.198 1.198 21 N -0.240 5.240 22 C 0.080 3.920 23 F -0.107 7.107 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.212 0.788 28 H 0.165 0.835 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.949 14.448 -1.786 22.342 hybrid contribution 1.076 -0.814 0.675 1.508 sum -15.873 13.634 -1.112 20.954 Atomic orbital electron populations 1.20903 0.86131 1.05162 1.04716 1.20008 0.99262 0.89074 0.99923 1.21416 0.90971 1.00112 0.98300 1.17396 0.90742 0.80333 1.03808 1.91549 1.80813 1.44497 1.93889 1.21014 1.01929 0.89383 0.99724 1.17216 0.90720 0.88291 1.07933 1.24068 0.87951 0.93723 1.02130 1.74907 1.13374 0.99544 1.22525 1.85256 1.13513 1.34256 1.66210 1.29796 0.91623 0.87008 0.89586 1.17998 0.79963 0.95704 0.99295 1.21030 1.05413 1.41205 0.90731 0.92932 1.25706 0.95751 0.94152 1.02096 1.70003 1.12658 1.39643 1.32914 0.85314 0.78232 0.78375 0.78633 1.19696 1.19548 1.19788 1.72029 1.12633 1.15833 1.23499 1.17788 0.87732 0.82811 1.03624 1.91535 1.79477 1.46243 1.93397 0.88643 0.91318 0.87256 0.78843 0.83521 0.92405 0.92222 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.83 71.24 0.70 -0.55 16 2 C -0.08 -1.49 5.88 -19.86 -0.12 -1.61 16 3 C -0.09 -1.36 9.67 22.34 0.22 -1.14 16 4 C 0.10 2.07 7.29 22.34 0.16 2.23 16 5 F -0.13 -2.76 17.26 44.97 0.78 -1.98 16 6 C -0.10 -2.81 9.68 22.52 0.22 -2.59 16 7 C -0.04 -1.27 5.88 -20.00 -0.12 -1.39 16 8 C 0.19 7.90 7.79 137.27 1.07 8.97 16 9 N -0.39 -16.96 10.87 -59.09 -0.64 -17.60 16 10 O 0.06 2.87 11.29 74.58 0.84 3.71 16 11 C 0.24 11.09 7.69 88.36 0.68 11.77 16 12 C 0.11 5.46 5.60 29.10 0.16 5.62 16 13 C -0.55 -29.59 9.09 25.60 0.23 -29.35 16 14 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 15 C 0.02 1.28 5.46 84.65 0.46 1.75 16 16 N -0.91 -50.55 13.29 21.45 0.28 -50.27 16 17 Si 0.97 42.17 29.54 68.60 2.03 44.20 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 N -0.51 -22.80 11.26 -302.47 -3.41 -26.21 16 22 C 0.10 2.84 7.22 22.59 0.16 3.00 16 23 F -0.13 -4.04 15.02 44.97 0.68 -3.37 16 24 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.92 7.63 -2.39 -0.02 0.90 16 26 H 0.11 0.57 8.08 -2.39 -0.02 0.55 16 27 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 28 H 0.15 4.42 7.88 -2.91 -0.02 4.40 16 29 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -62.78 293.04 5.58 -57.20 By element: Atomic # 1 Polarization: -3.57 SS G_CDS: 1.19 Total: -2.38 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 3.83 Total: -3.30 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -3.76 Total: -94.08 kcal Atomic # 8 Polarization: 2.87 SS G_CDS: 0.84 Total: 3.71 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 1.45 Total: -5.35 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -62.78 5.58 -57.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444841.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.877 kcal (2) G-P(sol) polarization free energy of solvation -62.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds