Wall clock time and date at job start Tue Mar 31 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38506 * 119.96475 * 2 1 4 4 F 1.35104 * 119.89099 * 359.97438 * 3 2 1 5 5 C 1.38588 * 120.22111 * 180.25428 * 3 2 1 6 6 C 1.37958 * 120.15034 * 359.49268 * 5 3 2 7 7 C 1.39336 * 119.92694 * 0.48313 * 6 5 3 8 8 C 1.48329 * 120.10997 * 179.74156 * 7 6 5 9 9 N 1.30799 * 126.42221 * 180.02562 * 8 7 6 10 10 O 1.21290 * 110.09196 * 180.02562 * 9 8 7 11 11 C 1.33671 * 110.03367 * 359.97438 * 10 9 8 12 12 C 1.50703 * 126.43052 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46930 * 269.97267 * 12 11 10 14 14 H 1.08004 * 119.99661 * 0.02562 * 13 12 11 15 15 C 1.37866 * 119.99980 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00358 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00154 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46737 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46954 * 120.00008 * 17 15 13 20 20 H 1.48490 * 109.47142 * 240.00251 * 17 15 13 21 21 N 1.30974 * 107.13113 * 359.73367 * 11 10 9 22 22 C 1.38200 * 119.96515 * 179.97438 * 2 1 3 23 23 F 1.35109 * 120.07650 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.46990 * 89.99528 * 1 2 3 25 25 H 1.09001 * 109.47149 * 209.99156 * 1 2 3 26 26 H 1.09001 * 109.47227 * 329.99756 * 1 2 3 27 27 H 1.08003 * 119.92435 * 179.75381 * 5 3 2 28 28 H 1.07998 * 120.03223 * 180.25674 * 6 5 3 29 29 H 1.09000 * 109.47086 * 29.97137 * 12 11 10 30 30 H 1.09000 * 109.47087 * 149.97533 * 12 11 10 31 31 H 0.97001 * 120.00843 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1999 0.0000 4 9 1.5204 2.3683 -0.0005 5 6 3.5847 1.2061 -0.0053 6 6 4.2830 0.0163 -0.0001 7 6 3.5934 -1.1944 0.0004 8 6 4.3401 -2.4760 0.0002 9 7 3.8216 -3.6769 0.0002 10 8 4.7022 -4.5109 0.0005 11 6 5.8982 -3.9140 0.0003 12 6 7.2405 -4.5993 0.0001 13 6 7.6884 -4.8271 1.4210 14 1 7.0633 -4.5079 2.2419 15 6 8.8959 -5.4429 1.6727 16 7 9.6572 -5.8311 0.6731 17 14 9.4515 -5.7246 3.4339 18 1 8.4228 -5.1996 4.3673 19 1 9.6355 -7.1794 3.6681 20 1 10.7374 -5.0193 3.6661 21 7 5.6845 -2.6219 -0.0060 22 6 2.1973 -1.1973 0.0005 23 9 1.5226 -2.3678 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 4.1193 2.1446 -0.0093 28 1 5.3629 0.0234 0.0000 29 1 7.1591 -5.5574 -0.5132 30 1 7.9686 -3.9721 -0.5142 31 1 10.5070 -6.2640 0.8501 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247445045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:55 Heat of formation + Delta-G solvation = -8.808704 kcal Electronic energy + Delta-G solvation = -20604.507241 eV Core-core repulsion = 16911.015831 eV Total energy + Delta-G solvation = -3693.491410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.27542 -49.05020 -44.85297 -39.14283 -35.38946 -34.04685 -33.04212 -32.16837 -30.29897 -28.48720 -27.36013 -24.48423 -24.13182 -22.81936 -21.77359 -20.69250 -18.28056 -17.61405 -17.51973 -16.98229 -16.38525 -16.24572 -15.79385 -15.60985 -15.42646 -14.80601 -14.58247 -13.80765 -13.44299 -13.41550 -13.20150 -12.88821 -12.55108 -12.42642 -12.33696 -12.00841 -11.60507 -11.43607 -11.21376 -10.99343 -10.85291 -10.46181 -10.21622 -10.03180 -9.29007 -9.05233 -8.66389 -8.53576 -6.29580 -4.35665 0.41099 0.76730 1.91563 2.69693 3.20617 3.28587 3.33267 3.40398 3.52277 3.66422 3.79752 4.08158 4.22023 4.28678 4.39864 4.66213 4.84144 5.08827 5.19218 5.27768 5.39112 5.51019 5.59923 5.72901 5.79204 5.86748 6.02759 6.41257 6.46051 6.56118 7.05578 7.11243 7.63926 7.85939 8.64986 8.76608 9.29852 10.80786 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.003761 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.251185 B = 7443.363317 C = 7817.072311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.162 4.162 3 C 0.135 3.865 4 F -0.129 7.129 5 C -0.161 4.161 6 C -0.026 4.026 7 C -0.043 4.043 8 C 0.186 3.814 9 N -0.384 5.384 10 O 0.072 5.928 11 C 0.244 3.756 12 C 0.100 3.900 13 C -0.525 4.525 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 N -0.497 5.497 22 C 0.155 3.845 23 F -0.111 7.111 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.150 0.850 28 H 0.159 0.841 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.241 12.280 -2.392 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.164 4.164 3 C 0.114 3.886 4 F -0.107 7.107 5 C -0.180 4.180 6 C -0.046 4.046 7 C -0.046 4.046 8 C -0.083 4.083 9 N -0.093 5.093 10 O 0.013 5.987 11 C 0.027 3.973 12 C 0.061 3.939 13 C -0.564 4.564 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 N -0.230 5.230 22 C 0.134 3.866 23 F -0.089 7.089 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.168 0.832 28 H 0.176 0.824 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.857 12.432 -2.454 18.777 hybrid contribution 0.311 -0.310 0.936 1.034 sum -13.546 12.122 -1.517 18.241 Atomic orbital electron populations 1.20652 0.88699 1.04000 1.03399 1.19705 0.98126 0.90524 1.08049 1.17267 0.89698 0.80444 1.01152 1.91511 1.80205 1.45464 1.93517 1.21131 0.91757 1.00062 1.05059 1.21027 1.01656 0.88783 0.93147 1.17452 0.89796 0.90241 1.07082 1.23458 0.88464 0.92550 1.03876 1.74938 1.13705 0.99283 1.21409 1.85275 1.13725 1.33942 1.65798 1.30149 0.91762 0.86677 0.88756 1.18274 0.79302 0.95993 1.00312 1.20827 1.04872 1.40686 0.90020 0.91942 1.24918 0.95913 0.94689 0.98111 1.69924 1.12182 1.39351 1.30981 0.86294 0.78717 0.78092 0.83576 1.19567 1.20579 1.20598 1.72029 1.11339 1.16197 1.23457 1.17098 0.88204 0.81299 1.00033 1.91588 1.79602 1.44797 1.92882 0.90330 0.90446 0.90481 0.83238 0.82360 0.92158 0.91116 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.65 36.01 0.35 -0.69 16 2 C -0.16 -1.94 5.89 -104.54 -0.62 -2.55 16 3 C 0.13 1.49 7.24 -39.35 -0.28 1.21 16 4 F -0.13 -1.35 16.46 2.25 0.04 -1.31 16 5 C -0.16 -1.69 10.01 -39.55 -0.40 -2.09 16 6 C -0.03 -0.34 9.70 -39.28 -0.38 -0.72 16 7 C -0.04 -0.69 5.88 -104.83 -0.62 -1.30 16 8 C 0.19 3.67 7.79 -156.11 -1.22 2.46 16 9 N -0.38 -8.01 10.87 30.97 0.34 -7.67 16 10 O 0.07 1.55 11.29 18.03 0.20 1.75 16 11 C 0.24 5.40 7.69 -12.98 -0.10 5.30 16 12 C 0.10 2.37 5.60 -29.03 -0.16 2.21 16 13 C -0.53 -13.79 9.09 -34.44 -0.31 -14.10 16 14 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 17 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 N -0.50 -10.55 11.26 -9.88 -0.11 -10.66 16 22 C 0.16 2.28 7.22 -39.09 -0.28 2.00 16 23 F -0.11 -1.78 15.02 2.25 0.03 -1.75 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.72 7.63 -51.93 -0.40 0.32 16 26 H 0.08 0.62 7.63 -51.93 -0.40 0.23 16 27 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.16 1.99 7.87 -52.49 -0.41 1.58 16 29 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 291.93 15.07 4.40 4.40 Total: -1.00 -28.13 291.93 -5.94 -34.07 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: -2.44 Total: -4.19 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -4.12 Total: -6.61 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.96 Total: -41.73 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.75 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.13 -5.94 -34.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247445045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.262 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds