Wall clock time and date at job start Tue Mar 31 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38506 * 119.96475 * 2 1 4 4 F 1.35104 * 119.89099 * 359.97438 * 3 2 1 5 5 C 1.38588 * 120.22111 * 180.25428 * 3 2 1 6 6 C 1.37958 * 120.15034 * 359.49268 * 5 3 2 7 7 C 1.39336 * 119.92694 * 0.48313 * 6 5 3 8 8 C 1.48329 * 120.10997 * 179.74156 * 7 6 5 9 9 N 1.30799 * 126.42221 * 180.02562 * 8 7 6 10 10 O 1.21290 * 110.09196 * 180.02562 * 9 8 7 11 11 C 1.33671 * 110.03367 * 359.97438 * 10 9 8 12 12 C 1.50703 * 126.43052 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46930 * 269.97267 * 12 11 10 14 14 H 1.08004 * 119.99661 * 0.02562 * 13 12 11 15 15 C 1.37866 * 119.99980 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00358 * 0.02562 * 15 13 12 17 17 Si 1.86809 * 120.00154 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46737 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46954 * 120.00008 * 17 15 13 20 20 H 1.48490 * 109.47142 * 240.00251 * 17 15 13 21 21 N 1.30974 * 107.13113 * 359.73367 * 11 10 9 22 22 C 1.38200 * 119.96515 * 179.97438 * 2 1 3 23 23 F 1.35109 * 120.07650 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.46990 * 89.99528 * 1 2 3 25 25 H 1.09001 * 109.47149 * 209.99156 * 1 2 3 26 26 H 1.09001 * 109.47227 * 329.99756 * 1 2 3 27 27 H 1.08003 * 119.92435 * 179.75381 * 5 3 2 28 28 H 1.07998 * 120.03223 * 180.25674 * 6 5 3 29 29 H 1.09000 * 109.47086 * 29.97137 * 12 11 10 30 30 H 1.09000 * 109.47087 * 149.97533 * 12 11 10 31 31 H 0.97001 * 120.00843 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1999 0.0000 4 9 1.5204 2.3683 -0.0005 5 6 3.5847 1.2061 -0.0053 6 6 4.2830 0.0163 -0.0001 7 6 3.5934 -1.1944 0.0004 8 6 4.3401 -2.4760 0.0002 9 7 3.8216 -3.6769 0.0002 10 8 4.7022 -4.5109 0.0005 11 6 5.8982 -3.9140 0.0003 12 6 7.2405 -4.5993 0.0001 13 6 7.6884 -4.8271 1.4210 14 1 7.0633 -4.5079 2.2419 15 6 8.8959 -5.4429 1.6727 16 7 9.6572 -5.8311 0.6731 17 14 9.4515 -5.7246 3.4339 18 1 8.4228 -5.1996 4.3673 19 1 9.6355 -7.1794 3.6681 20 1 10.7374 -5.0193 3.6661 21 7 5.6845 -2.6219 -0.0060 22 6 2.1973 -1.1973 0.0005 23 9 1.5226 -2.3678 0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 4.1193 2.1446 -0.0093 28 1 5.3629 0.0234 0.0000 29 1 7.1591 -5.5574 -0.5132 30 1 7.9686 -3.9721 -0.5142 31 1 10.5070 -6.2640 0.8501 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247445045.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:55 Heat of formation + Delta-G solvation = -24.533656 kcal Electronic energy + Delta-G solvation = -20605.189126 eV Core-core repulsion = 16911.015831 eV Total energy + Delta-G solvation = -3694.173295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.20828 -50.15728 -46.49083 -40.16686 -36.97438 -35.84833 -34.28361 -33.67302 -31.54973 -30.29783 -28.25721 -26.05440 -25.78429 -24.16729 -22.95082 -22.14271 -19.34959 -19.28777 -18.70489 -18.42956 -18.21839 -17.29508 -16.97545 -16.81171 -16.61037 -16.45297 -15.60418 -15.17259 -14.74956 -14.48259 -14.38219 -14.22250 -13.96125 -13.77691 -13.65347 -13.24701 -13.01934 -12.88722 -12.63491 -12.54577 -12.49215 -12.19494 -12.01431 -11.84727 -10.99306 -10.67562 -10.01184 -9.74452 -8.31206 -6.44472 -0.72333 -0.19900 0.29892 1.25892 1.43420 1.45736 1.57241 1.92356 2.23723 2.32538 2.41088 2.63156 2.86556 3.05484 3.15882 3.42729 3.57640 3.80643 4.10833 4.26894 4.51256 4.59390 4.61090 4.64998 4.79444 4.86017 4.86740 5.03050 5.04102 5.09408 5.20476 5.53530 5.58868 5.86874 6.60052 7.10295 7.24666 8.79771 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.003761 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.251185 B = 7443.363317 C = 7817.072311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.156 4.156 3 C 0.147 3.853 4 F -0.119 7.119 5 C -0.141 4.141 6 C -0.025 4.025 7 C -0.077 4.077 8 C 0.196 3.804 9 N -0.399 5.399 10 O 0.060 5.940 11 C 0.237 3.763 12 C 0.109 3.891 13 C -0.544 4.544 14 H 0.053 0.947 15 C 0.024 3.976 16 N -0.915 5.915 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.502 5.502 22 C 0.140 3.860 23 F -0.125 7.125 24 H 0.092 0.908 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.160 0.840 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 14.426 -1.733 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.158 4.158 3 C 0.126 3.874 4 F -0.097 7.097 5 C -0.159 4.159 6 C -0.044 4.044 7 C -0.080 4.080 8 C -0.074 4.074 9 N -0.112 5.112 10 O 0.005 5.995 11 C 0.018 3.982 12 C 0.071 3.929 13 C -0.583 4.583 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.553 5.553 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.197 1.197 21 N -0.236 5.236 22 C 0.119 3.881 23 F -0.104 7.104 24 H 0.110 0.890 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.204 0.796 28 H 0.178 0.822 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.547 14.558 -1.803 20.659 hybrid contribution 0.425 -0.812 0.690 1.148 sum -14.122 13.745 -1.113 19.738 Atomic orbital electron populations 1.20767 0.86870 1.04763 1.04492 1.19930 0.99457 0.89766 1.06677 1.17303 0.89937 0.80358 0.99785 1.91548 1.80071 1.44822 1.93234 1.21424 0.91552 1.00423 1.02496 1.21100 1.01824 0.88571 0.92941 1.17662 0.90398 0.89525 1.10429 1.24094 0.87994 0.93655 1.01671 1.74918 1.13446 0.99792 1.23019 1.85252 1.13531 1.34356 1.66341 1.29787 0.91601 0.87111 0.89679 1.17986 0.80046 0.95690 0.99227 1.21034 1.05271 1.41175 0.90790 0.92904 1.25695 0.95806 0.94191 1.01995 1.70000 1.12639 1.39753 1.32862 0.85326 0.78260 0.78298 0.78743 1.19675 1.19730 1.19749 1.72007 1.12404 1.15662 1.23510 1.17275 0.87859 0.81749 1.01257 1.91546 1.79791 1.45834 1.93193 0.88994 0.90649 0.88776 0.79609 0.82211 0.92615 0.92080 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.65 71.24 0.69 -1.14 16 2 C -0.16 -3.38 5.89 -19.81 -0.12 -3.50 16 3 C 0.15 2.74 7.24 22.42 0.16 2.90 16 4 F -0.12 -2.00 16.46 44.97 0.74 -1.26 16 5 C -0.14 -2.45 10.01 22.29 0.22 -2.23 16 6 C -0.02 -0.59 9.70 22.47 0.22 -0.37 16 7 C -0.08 -2.43 5.88 -20.00 -0.12 -2.55 16 8 C 0.20 7.83 7.79 137.25 1.07 8.90 16 9 N -0.40 -17.10 10.87 -59.08 -0.64 -17.75 16 10 O 0.06 2.69 11.29 74.59 0.84 3.53 16 11 C 0.24 10.78 7.69 88.36 0.68 11.46 16 12 C 0.11 5.37 5.60 29.10 0.16 5.53 16 13 C -0.54 -29.09 9.09 25.60 0.23 -28.86 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 15 C 0.02 1.27 5.46 84.65 0.46 1.74 16 16 N -0.91 -50.04 13.29 21.44 0.28 -49.75 16 17 Si 0.97 41.66 29.54 68.60 2.03 43.69 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 N -0.50 -21.70 11.26 -302.46 -3.40 -25.11 16 22 C 0.14 4.01 7.22 22.59 0.16 4.17 16 23 F -0.13 -4.06 15.02 44.97 0.68 -3.39 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.27 7.63 -2.39 -0.02 1.26 16 26 H 0.09 1.21 7.63 -2.39 -0.02 1.19 16 27 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.16 3.80 7.87 -2.91 -0.02 3.77 16 29 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -60.45 291.93 5.53 -54.92 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: 1.19 Total: -0.94 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 3.83 Total: -3.94 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -3.76 Total: -92.61 kcal Atomic # 8 Polarization: 2.69 SS G_CDS: 0.84 Total: 3.53 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 1.42 Total: -4.65 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -60.45 5.53 -54.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247445045.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.386 kcal (2) G-P(sol) polarization free energy of solvation -60.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds