Wall clock time and date at job start Tue Mar 31 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86792 * 120.00280 * 2 1 4 4 H 1.48504 * 109.47115 * 240.00155 * 3 2 1 5 5 H 1.48499 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47742 * 119.99826 * 3 2 1 7 7 C 1.37880 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47477 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47477 * 180.02562 * 10 9 7 12 12 N 1.30969 * 126.43525 * 90.26860 * 11 10 9 13 13 C 1.35236 * 105.57643 * 180.12864 * 12 11 10 14 14 C 1.48363 * 126.41750 * 179.87910 * 13 12 11 15 15 C 1.39337 * 120.12350 * 179.71446 * 14 13 12 16 16 C 1.38191 * 119.87962 * 179.74601 * 15 14 13 17 17 F 1.35099 * 119.94073 * 180.22917 * 16 15 14 18 18 C 1.38583 * 120.12533 * 0.26228 * 16 15 14 19 19 C 1.38216 * 120.24705 * 359.97078 * 18 16 15 20 20 C 1.38300 * 120.12131 * 0.02562 * 19 18 16 21 21 F 1.35098 * 120.06409 * 179.97438 * 20 19 18 22 22 N 1.30786 * 107.16520 * 359.62158 * 13 12 11 23 23 O 1.21284 * 110.09449 * 0.24073 * 22 13 12 24 24 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46916 * 60.00192 * 9 7 2 26 26 H 1.09003 * 109.47485 * 300.00485 * 9 7 2 27 27 H 1.09005 * 109.47335 * 60.00007 * 10 9 7 28 28 H 1.09000 * 109.47396 * 300.00216 * 10 9 7 29 29 H 1.08002 * 120.06336 * 0.03139 * 15 14 13 30 30 H 1.07993 * 119.87851 * 180.02562 * 18 16 15 31 31 H 1.07994 * 119.93870 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4916 -4.9673 0.0033 12 7 1.1073 -5.6440 -1.0501 13 6 0.4708 -6.7355 -0.5682 14 6 -0.1530 -7.8170 -1.3698 15 6 -0.7728 -8.8905 -0.7335 16 6 -1.3568 -9.8923 -1.4850 17 9 -1.9622 -10.9314 -0.8693 18 6 -1.3220 -9.8337 -2.8692 19 6 -0.7043 -8.7737 -3.5058 20 6 -0.1167 -7.7654 -2.7636 21 9 0.4872 -6.7302 -3.3871 22 7 0.5129 -6.6621 0.7369 23 8 1.0946 -5.6543 1.0790 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6245 -2.5564 0.8919 27 1 2.8718 -3.6036 0.8927 28 1 2.8718 -3.6052 -0.8873 29 1 -0.8009 -8.9371 0.3452 30 1 -1.7800 -10.6186 -3.4526 31 1 -0.6805 -8.7327 -4.5847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248333050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:22 Heat of formation + Delta-G solvation = -5.674340 kcal Electronic energy + Delta-G solvation = -20343.287958 eV Core-core repulsion = 16649.932465 eV Total energy + Delta-G solvation = -3693.355494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.23650 -48.93705 -45.24323 -39.12997 -35.72145 -34.60423 -32.84511 -31.51518 -30.30218 -30.02835 -25.91887 -25.06685 -23.72750 -22.48953 -21.96071 -20.62589 -18.28985 -17.80214 -17.60635 -17.28974 -16.74354 -16.30537 -16.08805 -15.47260 -15.15287 -14.59884 -14.57015 -14.27766 -14.06933 -13.51854 -13.20490 -12.80216 -12.59890 -12.46538 -12.19898 -11.69203 -11.54632 -11.42155 -10.99534 -10.87032 -10.72647 -10.28807 -10.16144 -9.62838 -9.34906 -9.20883 -8.72557 -8.46449 -6.10866 -4.15944 0.25615 0.63403 1.55043 2.44463 3.15546 3.19466 3.29466 3.34105 3.35163 3.38104 3.76232 3.91574 4.08817 4.36191 4.41656 4.51660 4.74991 5.06489 5.25761 5.32918 5.48188 5.57003 5.68710 5.71782 5.88201 5.98877 6.17447 6.24353 6.40072 6.57339 7.45903 7.53044 7.84028 8.19151 8.37332 8.88964 9.49097 11.00345 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.003399 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.064485 B = 8234.980356 C = 8596.467743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.222 3.778 12 N -0.477 5.477 13 C 0.193 3.807 14 C -0.017 4.017 15 C -0.094 4.094 16 C 0.085 3.915 17 F -0.132 7.132 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.135 3.865 21 F -0.106 7.106 22 N -0.381 5.381 23 O 0.080 5.920 24 H 0.264 0.736 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -19.017 -4.761 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.068 4.068 11 C 0.003 3.997 12 N -0.209 5.209 13 C -0.076 4.076 14 C -0.020 4.020 15 C -0.115 4.115 16 C 0.066 3.934 17 F -0.111 7.111 18 C -0.129 4.129 19 C -0.149 4.149 20 C 0.114 3.886 21 F -0.084 7.084 22 N -0.089 5.089 23 O 0.019 5.981 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.612 -19.564 -4.657 20.175 hybrid contribution 0.367 1.074 0.093 1.139 sum -1.245 -18.490 -4.564 19.086 Atomic orbital electron populations 1.69952 1.06174 1.27134 1.49663 1.25008 0.94872 0.99457 0.94861 0.86556 0.79499 0.82632 0.78741 1.20067 1.21255 1.20061 1.21018 0.93141 0.90166 1.52226 0.92028 1.19167 0.93568 0.89778 0.98556 1.20832 0.98007 0.83354 1.04642 1.29703 0.93892 0.96982 0.79151 1.72188 1.15886 1.04328 1.28499 1.23434 1.00794 0.95426 0.87975 1.17130 1.01495 0.93078 0.90286 1.21005 0.96926 0.91801 1.01752 1.17366 0.98645 0.86708 0.90679 1.91535 1.80929 1.55468 1.83136 1.21117 0.99927 0.99394 0.92501 1.20976 0.99356 0.93105 1.01434 1.17643 0.95498 0.86532 0.88961 1.91656 1.79886 1.55083 1.81745 1.74804 1.15494 1.04171 1.14409 1.85267 1.51952 1.24600 1.36296 0.92659 0.95444 0.95751 0.88823 0.87944 0.82948 0.83211 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -13.96 9.11 -34.44 -0.31 -14.27 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.67 4.95 -27.89 -0.14 0.53 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.22 4.18 7.75 -12.99 -0.10 4.08 16 12 N -0.48 -9.25 10.25 -9.88 -0.10 -9.35 16 13 C 0.19 3.43 7.79 -156.11 -1.22 2.21 16 14 C -0.02 -0.25 5.88 -104.84 -0.62 -0.86 16 15 C -0.09 -1.13 9.67 -39.19 -0.38 -1.51 16 16 C 0.09 0.87 7.29 -39.47 -0.29 0.58 16 17 F -0.13 -1.37 17.26 2.25 0.04 -1.33 16 18 C -0.11 -0.90 10.02 -39.46 -0.40 -1.29 16 19 C -0.13 -1.18 10.01 -39.57 -0.40 -1.58 16 20 C 0.14 1.78 7.28 -39.08 -0.28 1.49 16 21 F -0.11 -1.65 15.80 2.25 0.04 -1.61 16 22 N -0.38 -6.83 11.86 30.97 0.37 -6.46 16 23 O 0.08 1.46 11.29 18.03 0.20 1.66 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 28 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.15 1.78 7.87 -52.49 -0.41 1.37 16 30 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -30.26 294.19 -6.18 -36.44 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: -2.49 Total: -4.50 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -4.39 Total: -9.77 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 1.00 Total: -41.08 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.66 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.07 Total: -2.94 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.26 -6.18 -36.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248333050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.766 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds