Wall clock time and date at job start Tue Mar 31 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86792 * 120.00280 * 2 1 4 4 H 1.48504 * 109.47115 * 240.00155 * 3 2 1 5 5 H 1.48499 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47742 * 119.99826 * 3 2 1 7 7 C 1.37880 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47477 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47477 * 180.02562 * 10 9 7 12 12 N 1.30969 * 126.43525 * 90.26860 * 11 10 9 13 13 C 1.35236 * 105.57643 * 180.12864 * 12 11 10 14 14 C 1.48363 * 126.41750 * 179.87910 * 13 12 11 15 15 C 1.39337 * 120.12350 * 179.71446 * 14 13 12 16 16 C 1.38191 * 119.87962 * 179.74601 * 15 14 13 17 17 F 1.35099 * 119.94073 * 180.22917 * 16 15 14 18 18 C 1.38583 * 120.12533 * 0.26228 * 16 15 14 19 19 C 1.38216 * 120.24705 * 359.97078 * 18 16 15 20 20 C 1.38300 * 120.12131 * 0.02562 * 19 18 16 21 21 F 1.35098 * 120.06409 * 179.97438 * 20 19 18 22 22 N 1.30786 * 107.16520 * 359.62158 * 13 12 11 23 23 O 1.21284 * 110.09449 * 0.24073 * 22 13 12 24 24 H 0.97001 * 120.00140 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46916 * 60.00192 * 9 7 2 26 26 H 1.09003 * 109.47485 * 300.00485 * 9 7 2 27 27 H 1.09005 * 109.47335 * 60.00007 * 10 9 7 28 28 H 1.09000 * 109.47396 * 300.00216 * 10 9 7 29 29 H 1.08002 * 120.06336 * 0.03139 * 15 14 13 30 30 H 1.07993 * 119.87851 * 180.02562 * 18 16 15 31 31 H 1.07994 * 119.93870 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4916 -4.9673 0.0033 12 7 1.1073 -5.6440 -1.0501 13 6 0.4708 -6.7355 -0.5682 14 6 -0.1530 -7.8170 -1.3698 15 6 -0.7728 -8.8905 -0.7335 16 6 -1.3568 -9.8923 -1.4850 17 9 -1.9622 -10.9314 -0.8693 18 6 -1.3220 -9.8337 -2.8692 19 6 -0.7043 -8.7737 -3.5058 20 6 -0.1167 -7.7654 -2.7636 21 9 0.4872 -6.7302 -3.3871 22 7 0.5129 -6.6621 0.7369 23 8 1.0946 -5.6543 1.0790 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6245 -2.5564 0.8919 27 1 2.8718 -3.6036 0.8927 28 1 2.8718 -3.6052 -0.8873 29 1 -0.8009 -8.9371 0.3452 30 1 -1.7800 -10.6186 -3.4526 31 1 -0.6805 -8.7327 -4.5847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248333050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:22 Heat of formation + Delta-G solvation = -23.681257 kcal Electronic energy + Delta-G solvation = -20344.068797 eV Core-core repulsion = 16649.932465 eV Total energy + Delta-G solvation = -3694.136332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.05683 -50.00498 -46.66374 -40.02540 -37.16366 -36.25906 -34.55450 -32.79458 -31.59436 -31.15592 -27.78126 -26.18526 -25.04448 -23.75722 -23.34765 -22.05585 -19.45492 -19.21722 -18.59219 -18.48104 -18.23914 -17.75100 -16.99671 -16.50587 -16.44405 -16.23687 -15.74867 -15.44962 -15.18527 -14.88804 -14.37248 -14.20135 -13.76694 -13.73462 -13.70941 -13.43482 -12.80732 -12.78125 -12.56457 -12.45566 -12.17063 -11.97412 -11.95106 -11.38020 -11.13559 -10.55816 -10.25485 -9.70258 -8.20172 -6.32476 -0.74165 -0.21821 0.16087 1.18472 1.46548 1.49509 1.56951 1.71815 2.17560 2.24635 2.44499 2.68761 2.98793 3.07222 3.15308 3.45998 3.68801 3.84415 3.99783 4.23550 4.39314 4.50099 4.54446 4.71736 4.74870 4.78972 4.86797 4.92406 4.93006 5.42509 5.51476 5.55146 5.77150 6.12534 6.82980 6.93871 7.37800 8.92140 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.003399 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.064485 B = 8234.980356 C = 8596.467743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.033 3.967 10 C -0.014 4.014 11 C 0.217 3.783 12 N -0.496 5.496 13 C 0.195 3.805 14 C -0.051 4.051 15 C -0.098 4.098 16 C 0.088 3.912 17 F -0.131 7.131 18 C -0.082 4.082 19 C -0.111 4.111 20 C 0.114 3.886 21 F -0.127 7.127 22 N -0.390 5.390 23 O 0.073 5.927 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.001 1.001 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.148 0.852 30 H 0.194 0.806 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -20.415 -5.985 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.098 0.902 9 C -0.005 4.005 10 C -0.053 4.053 11 C -0.003 4.003 12 N -0.229 5.229 13 C -0.075 4.075 14 C -0.054 4.054 15 C -0.119 4.119 16 C 0.068 3.932 17 F -0.109 7.109 18 C -0.101 4.101 19 C -0.130 4.130 20 C 0.093 3.907 21 F -0.105 7.105 22 N -0.100 5.100 23 O 0.015 5.985 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.017 0.983 27 H 0.139 0.861 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.211 0.789 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.065 -20.971 -5.862 21.801 hybrid contribution 0.105 1.341 0.426 1.411 sum -0.960 -19.630 -5.436 20.392 Atomic orbital electron populations 1.70110 1.08118 1.28025 1.51279 1.26010 0.95671 1.03646 0.94500 0.85411 0.78091 0.77570 0.79447 1.18962 1.21532 1.18664 1.21536 0.94218 0.90900 1.51092 0.90221 1.18952 0.93988 0.91917 0.95636 1.20596 0.96737 0.81298 1.06648 1.29615 0.94075 0.97146 0.79426 1.72179 1.16528 1.05208 1.29017 1.24037 0.99827 0.95555 0.88081 1.17281 1.03826 0.93430 0.90893 1.20975 0.97156 0.91920 1.01805 1.17454 0.98155 0.86069 0.91505 1.91547 1.80810 1.55230 1.83348 1.21583 0.97554 0.99369 0.91585 1.21354 0.97280 0.91440 1.02890 1.18062 0.96616 0.87274 0.88762 1.91597 1.80589 1.56382 1.81965 1.74774 1.16206 1.04256 1.14762 1.85242 1.52216 1.24851 1.36180 0.92761 0.98948 0.98273 0.86083 0.86668 0.83438 0.78858 0.79306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.07 13.29 21.45 0.28 -55.78 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.54 -28.67 9.11 25.60 0.23 -28.44 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.68 4.95 29.85 0.15 1.83 16 10 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 11 C 0.22 8.39 7.75 88.36 0.68 9.07 16 12 N -0.50 -19.86 10.25 -302.49 -3.10 -22.96 16 13 C 0.19 7.12 7.79 137.27 1.07 8.19 16 14 C -0.05 -1.49 5.88 -20.00 -0.12 -1.61 16 15 C -0.10 -2.30 9.67 22.52 0.22 -2.08 16 16 C 0.09 1.56 7.29 22.34 0.16 1.73 16 17 F -0.13 -2.37 17.26 44.97 0.78 -1.60 16 18 C -0.08 -0.99 10.02 22.35 0.22 -0.76 16 19 C -0.11 -1.66 10.01 22.28 0.22 -1.43 16 20 C 0.11 2.91 7.28 22.60 0.16 3.07 16 21 F -0.13 -3.98 15.80 44.97 0.71 -3.27 16 22 N -0.39 -14.45 11.86 -59.12 -0.70 -15.15 16 23 O 0.07 2.76 11.29 74.60 0.84 3.60 16 24 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.12 3.90 8.14 -2.38 -0.02 3.88 16 28 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 29 H 0.15 3.50 7.87 -2.91 -0.02 3.48 16 30 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 31 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -68.07 294.19 5.66 -62.41 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: 1.18 Total: -1.40 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 3.64 Total: -10.35 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -3.52 Total: -93.90 kcal Atomic # 8 Polarization: 2.76 SS G_CDS: 0.84 Total: 3.60 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.49 Total: -4.87 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -68.07 5.66 -62.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248333050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.728 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds