Wall clock time and date at job start Tue Mar 31 2020 01:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 C 1.38417 * 119.97921 * 269.72740 * 12 11 10 14 14 F 1.35106 * 119.98812 * 359.97438 * 13 12 11 15 15 C 1.38594 * 120.02070 * 179.72989 * 13 12 11 16 16 F 1.35097 * 120.01383 * 180.24997 * 15 13 12 17 17 C 1.38575 * 119.97701 * 0.56005 * 15 13 12 18 18 F 1.35100 * 120.01865 * 179.68860 * 17 15 13 19 19 C 1.38565 * 119.96551 * 359.71107 * 17 15 13 20 20 F 1.35093 * 120.01270 * 179.97438 * 19 17 15 21 21 C 1.38414 * 119.98493 * 89.99266 * 12 11 10 22 22 F 1.35093 * 119.98804 * 0.02562 * 21 12 11 23 23 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 25 25 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 26 26 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 27 27 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 28 28 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 29 29 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0005 13 6 2.9052 -6.6620 -1.1992 14 9 2.4621 -6.1519 -2.3692 15 6 3.8101 -7.7117 -1.1997 16 9 4.2492 -8.2250 -2.3697 17 6 4.2595 -8.2390 0.0005 18 9 5.1367 -9.2665 0.0010 19 6 3.8082 -7.7123 1.2000 20 9 4.2453 -8.2259 2.3706 21 6 2.9080 -6.6584 1.1986 22 9 2.4676 -6.1449 2.3680 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6245 -2.5571 0.8896 26 1 2.8717 -3.6045 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8531 -5.0451 0.8886 29 1 0.8537 -5.0446 -0.8913 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:18 Heat of formation + Delta-G solvation = -226.416122 kcal Electronic energy + Delta-G solvation = -21353.259930 eV Core-core repulsion = 17076.182863 eV Total energy + Delta-G solvation = -4277.077067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.058 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.22779 -50.95037 -50.51859 -49.98885 -49.61391 -40.12070 -36.55266 -34.58028 -31.98845 -31.31880 -28.72450 -25.89868 -24.72377 -23.59622 -21.99040 -20.36998 -20.05168 -19.30311 -18.53188 -18.39912 -17.93961 -17.70787 -17.33859 -17.24961 -16.89253 -16.53477 -16.22522 -16.13897 -15.74894 -15.68056 -15.55079 -15.52116 -14.42732 -14.37414 -14.09473 -13.37342 -13.34062 -13.07618 -12.92606 -12.60581 -12.42502 -12.31185 -11.54085 -11.39916 -11.23376 -10.52979 -10.12987 -10.08993 -8.18713 -6.29084 -0.94066 -0.92060 1.36962 1.41738 1.43754 1.51623 1.60004 2.23026 2.41838 2.42500 2.68328 2.84321 2.86874 3.15008 3.54910 3.79109 3.83565 4.14358 4.30572 4.31582 4.40088 4.68991 4.97964 5.07507 5.11814 5.22213 5.52912 5.74853 5.86859 6.25916 6.87662 7.39980 8.92643 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.004208 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.715851 B = 6652.052681 C = 7183.207925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.093 4.093 11 C -0.080 4.080 12 C -0.090 4.090 13 C 0.126 3.874 14 F -0.105 7.105 15 C 0.066 3.934 16 F -0.105 7.105 17 C 0.094 3.906 18 F -0.101 7.101 19 C 0.066 3.934 20 F -0.105 7.105 21 C 0.126 3.874 22 F -0.105 7.105 23 H 0.263 0.737 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 -18.274 -0.001 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.117 4.117 12 C -0.092 4.092 13 C 0.105 3.895 14 F -0.083 7.083 15 C 0.044 3.956 16 F -0.083 7.083 17 C 0.073 3.927 18 F -0.079 7.079 19 C 0.044 3.956 20 F -0.083 7.083 21 C 0.105 3.895 22 F -0.083 7.083 23 H 0.072 0.928 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.252 -18.210 -0.001 19.601 hybrid contribution 0.316 0.760 0.001 0.823 sum 7.568 -17.450 0.000 19.021 Atomic orbital electron populations 1.70073 1.07662 1.27796 1.51625 1.25923 0.95741 1.03166 0.94818 0.85574 0.78353 0.78436 0.79146 1.19252 1.20918 1.19260 1.21682 0.93572 0.92498 1.50576 0.92266 1.18998 0.94349 0.92498 0.95426 1.21447 0.98217 0.92293 1.01136 1.20671 0.95676 0.89846 1.05472 1.19803 1.00818 0.99247 0.89342 1.16665 0.96612 0.93994 0.82241 1.91627 1.87162 1.85434 1.44069 1.16972 1.00072 0.97043 0.81474 1.91611 1.87681 1.85404 1.43639 1.16553 0.95060 0.90557 0.90579 1.91623 1.65046 1.54321 1.96881 1.16970 1.00169 0.96955 0.81466 1.91610 1.87746 1.85389 1.43590 1.16663 0.96705 0.93894 0.82250 1.91623 1.87248 1.85298 1.44118 0.92780 0.98376 0.98384 0.92616 0.92623 0.88822 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.44 15 2 C 0.00 0.08 5.46 84.65 0.46 0.55 15 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 15 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 7 C -0.55 -30.32 9.11 25.60 0.23 -30.09 15 8 H 0.06 3.16 7.74 -2.91 -0.02 3.13 15 9 C 0.02 1.22 4.97 29.85 0.15 1.37 15 10 C -0.09 -3.52 5.14 30.60 0.16 -3.36 15 11 C -0.08 -2.32 4.99 29.85 0.15 -2.18 15 12 C -0.09 -2.16 5.14 -19.78 -0.10 -2.26 15 13 C 0.13 2.87 7.24 22.40 0.16 3.03 15 14 F -0.10 -2.67 16.38 44.97 0.74 -1.94 15 15 C 0.07 1.37 7.31 22.44 0.16 1.53 15 16 F -0.11 -2.27 17.09 44.97 0.77 -1.51 15 17 C 0.09 1.86 7.31 22.43 0.16 2.03 15 18 F -0.10 -2.02 17.09 44.97 0.77 -1.26 15 19 C 0.07 1.37 7.31 22.43 0.16 1.53 15 20 F -0.11 -2.27 17.09 44.97 0.77 -1.50 15 21 C 0.13 2.87 7.24 22.40 0.16 3.03 15 22 F -0.10 -2.67 16.38 44.97 0.74 -1.94 15 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 15 24 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 28 H 0.09 2.66 7.63 -2.39 -0.02 2.64 15 29 H 0.09 2.66 7.63 -2.39 -0.02 2.64 15 Total: -1.00 -59.51 283.29 9.17 -50.34 By element: Atomic # 1 Polarization: -8.83 SS G_CDS: 1.21 Total: -7.61 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 1.86 Total: -24.83 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 3.78 Total: -8.14 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -59.51 9.17 -50.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.076 kcal (2) G-P(sol) polarization free energy of solvation -59.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds