Wall clock time and date at job start Tue Mar 31 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48501 * 109.46928 * 240.00012 * 3 2 1 5 5 H 1.48497 * 109.47106 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46687 * 120.00237 * 3 2 1 7 7 C 1.37874 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47469 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00072 * 11 10 9 13 13 N 1.46901 * 109.46860 * 65.00222 * 11 10 9 14 14 C 1.50701 * 109.47419 * 184.99997 * 11 10 9 15 15 N 1.30962 * 126.42649 * 104.99715 * 14 11 10 16 16 C 1.35266 * 105.57952 * 180.02562 * 15 14 11 17 17 C 1.48239 * 126.42652 * 179.97438 * 16 15 14 18 18 C 1.34914 * 122.98412 * 180.02562 * 17 16 15 19 19 S 1.76170 * 107.86589 * 180.02562 * 18 17 16 20 20 C 1.70908 * 90.44424 * 359.97438 * 19 18 17 21 21 N 1.28729 * 110.51651 * 359.73190 * 20 19 18 22 22 N 1.30872 * 107.15070 * 0.02562 * 16 15 14 23 23 O 1.21288 * 110.07436 * 359.70271 * 22 16 15 24 24 H 0.96998 * 120.00384 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47531 * 59.99831 * 9 7 2 26 26 H 1.09006 * 109.47449 * 300.00332 * 9 7 2 27 27 H 1.09008 * 109.47149 * 59.99835 * 10 9 7 28 28 H 1.08997 * 109.47163 * 299.99905 * 10 9 7 29 29 H 1.00901 * 110.99547 * 296.04492 * 13 11 10 30 30 H 1.00898 * 111.00245 * 59.99865 * 13 11 10 31 31 H 1.08001 * 126.06088 * 0.02562 * 18 17 16 32 32 H 1.07998 * 124.74186 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 0.0001 12 1 0.7886 -5.0068 0.8422 13 7 0.7284 -5.1189 -1.2549 14 6 2.4551 -6.1298 0.1239 15 7 2.6746 -6.8522 1.1940 16 6 3.6221 -7.7497 0.8384 17 6 4.2136 -8.7958 1.7064 18 6 5.1590 -9.6576 1.2778 19 16 5.5723 -10.7187 2.6220 20 6 4.4470 -9.9109 3.6230 21 7 3.8649 -8.9635 2.9744 22 7 3.9195 -7.5207 -0.4153 23 8 3.2546 -6.5990 -0.8392 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.0235 -4.4009 -1.3310 30 1 1.3479 -5.1033 -2.0511 31 1 5.5865 -9.6910 0.2865 32 1 4.2542 -10.1581 4.6565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261442414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:44 Heat of formation + Delta-G solvation = 107.831959 kcal Electronic energy + Delta-G solvation = -18426.544483 eV Core-core repulsion = 15324.244130 eV Total energy + Delta-G solvation = -3102.300353 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.44944 -40.04068 -36.86620 -35.56841 -33.22011 -32.27796 -30.34460 -30.02813 -26.76811 -26.16906 -24.41478 -24.01226 -22.05361 -20.62566 -19.67811 -18.85978 -17.95364 -17.18059 -16.51070 -16.15488 -15.82890 -14.89479 -14.82007 -14.54122 -14.26711 -13.67907 -13.51456 -13.44101 -12.65117 -12.27310 -12.10350 -11.88916 -11.78735 -11.14710 -10.98178 -10.93378 -10.67247 -10.34501 -10.03764 -10.03209 -9.89679 -9.62686 -9.30505 -9.06910 -8.53689 -8.44085 -6.10355 -4.13648 0.15639 0.89932 1.16555 1.23513 1.90467 2.89937 2.95769 3.21798 3.28571 3.33412 3.35892 3.73056 4.36741 4.38776 4.78117 4.91395 4.98677 5.06178 5.26031 5.37108 5.45907 5.59237 5.74531 6.01271 6.27241 6.41638 6.77653 7.19692 7.27469 7.44582 7.57198 7.62714 7.86210 8.18489 8.27553 8.91550 9.51439 11.00568 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.003051 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.362044 B = 9176.606502 C = 9509.506367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.143 4.143 11 C 0.180 3.820 12 H 0.125 0.875 13 N -0.840 5.840 14 C 0.219 3.781 15 N -0.459 5.459 16 C 0.232 3.768 17 C 0.144 3.856 18 C -0.218 4.218 19 S 0.147 5.853 20 C 0.028 3.972 21 N -0.437 5.437 22 N -0.376 5.376 23 O 0.087 5.913 24 H 0.263 0.737 25 H 0.020 0.980 26 H 0.022 0.978 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.367 0.633 30 H 0.344 0.656 31 H 0.187 0.813 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -20.635 2.929 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.183 4.183 11 C 0.066 3.934 12 H 0.143 0.857 13 N -0.373 5.373 14 C -0.002 4.002 15 N -0.191 5.191 16 C -0.041 4.041 17 C 0.011 3.989 18 C -0.361 4.361 19 S 0.399 5.601 20 C -0.272 4.272 21 N -0.150 5.150 22 N -0.083 5.083 23 O 0.026 5.974 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.185 0.815 30 H 0.157 0.843 31 H 0.205 0.795 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.307 -22.317 3.663 24.456 hybrid contribution 0.421 2.656 -0.689 2.776 sum 9.728 -19.660 2.973 22.136 Atomic orbital electron populations 1.69931 1.06005 1.26995 1.50197 1.24997 0.94880 0.99310 0.95029 0.86629 0.79595 0.82950 0.78695 1.20194 1.21189 1.20194 1.21108 0.93041 0.90766 1.51471 0.92671 1.19099 0.93603 0.90798 0.97658 1.22550 1.00346 0.93256 1.02190 1.20278 0.90788 0.85964 0.96348 0.85715 1.58976 1.18554 1.56894 1.02898 1.29180 0.93047 0.96434 0.81575 1.72128 1.15066 1.06020 1.25883 1.22656 0.95446 0.96850 0.89100 1.16873 0.97117 0.95668 0.89219 1.27162 1.03359 1.00400 1.05130 1.84047 1.39800 1.33900 1.02365 1.28434 0.97940 0.95595 1.05277 1.66041 1.25458 1.17822 1.05679 1.74866 1.15936 1.05241 1.12281 1.85252 1.39126 1.34464 1.38589 0.92754 0.96144 0.95936 0.91911 0.92135 0.81549 0.84337 0.79535 0.77513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.19 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.60 4.74 -27.89 -0.13 0.47 16 10 C -0.14 -2.72 4.78 -26.73 -0.13 -2.85 16 11 C 0.18 2.95 3.35 -68.86 -0.23 2.72 16 12 H 0.13 2.08 8.14 -51.93 -0.42 1.66 16 13 N -0.84 -12.34 9.17 -5.65 -0.05 -12.39 16 14 C 0.22 3.71 7.30 -12.98 -0.09 3.61 16 15 N -0.46 -8.35 11.58 -9.86 -0.11 -8.47 16 16 C 0.23 3.91 8.01 -156.06 -1.25 2.66 16 17 C 0.14 2.05 6.72 -84.61 -0.57 1.49 16 18 C -0.22 -2.31 11.11 29.55 0.33 -1.98 16 19 S 0.15 1.05 23.21 -107.50 -2.49 -1.44 16 20 C 0.03 0.25 12.19 51.46 0.63 0.87 16 21 N -0.44 -6.01 10.55 -12.29 -0.13 -6.14 16 22 N -0.38 -6.15 12.09 30.99 0.37 -5.78 16 23 O 0.09 1.42 11.27 18.01 0.20 1.63 16 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.02 0.48 6.87 -51.93 -0.36 0.12 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.37 5.43 7.55 -39.29 -0.30 5.13 16 30 H 0.34 4.65 8.97 -39.29 -0.35 4.29 16 31 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.21 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -31.68 302.90 -6.87 -38.55 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.08 Total: 4.24 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.86 Total: -5.95 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.82 Total: -57.69 kcal Atomic # 8 Polarization: 1.42 SS G_CDS: 0.20 Total: 1.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.68 -6.87 -38.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261442414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.386 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds