Wall clock time and date at job start Tue Mar 31 2020 01:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48501 * 109.46928 * 240.00012 * 3 2 1 5 5 H 1.48497 * 109.47106 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46687 * 120.00237 * 3 2 1 7 7 C 1.37874 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99999 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47339 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47469 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47070 * 305.00072 * 11 10 9 13 13 N 1.46901 * 109.46860 * 65.00222 * 11 10 9 14 14 C 1.50701 * 109.47419 * 184.99997 * 11 10 9 15 15 N 1.30962 * 126.42649 * 104.99715 * 14 11 10 16 16 C 1.35266 * 105.57952 * 180.02562 * 15 14 11 17 17 C 1.48239 * 126.42652 * 179.97438 * 16 15 14 18 18 C 1.34914 * 122.98412 * 180.02562 * 17 16 15 19 19 S 1.76170 * 107.86589 * 180.02562 * 18 17 16 20 20 C 1.70908 * 90.44424 * 359.97438 * 19 18 17 21 21 N 1.28729 * 110.51651 * 359.73190 * 20 19 18 22 22 N 1.30872 * 107.15070 * 0.02562 * 16 15 14 23 23 O 1.21288 * 110.07436 * 359.70271 * 22 16 15 24 24 H 0.96998 * 120.00384 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47531 * 59.99831 * 9 7 2 26 26 H 1.09006 * 109.47449 * 300.00332 * 9 7 2 27 27 H 1.09008 * 109.47149 * 59.99835 * 10 9 7 28 28 H 1.08997 * 109.47163 * 299.99905 * 10 9 7 29 29 H 1.00901 * 110.99547 * 296.04492 * 13 11 10 30 30 H 1.00898 * 111.00245 * 59.99865 * 13 11 10 31 31 H 1.08001 * 126.06088 * 0.02562 * 18 17 16 32 32 H 1.07998 * 124.74186 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9871 0.0001 12 1 0.7886 -5.0068 0.8422 13 7 0.7284 -5.1189 -1.2549 14 6 2.4551 -6.1298 0.1239 15 7 2.6746 -6.8522 1.1940 16 6 3.6221 -7.7497 0.8384 17 6 4.2136 -8.7958 1.7064 18 6 5.1590 -9.6576 1.2778 19 16 5.5723 -10.7187 2.6220 20 6 4.4470 -9.9109 3.6230 21 7 3.8649 -8.9635 2.9744 22 7 3.9195 -7.5207 -0.4153 23 8 3.2546 -6.5990 -0.8392 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5571 0.8897 27 1 2.8721 -3.6043 0.8895 28 1 2.8720 -3.6043 -0.8905 29 1 0.0235 -4.4009 -1.3310 30 1 1.3479 -5.1033 -2.0511 31 1 5.5865 -9.6910 0.2865 32 1 4.2542 -10.1581 4.6565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261442414.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:43 Heat of formation + Delta-G solvation = 83.015202 kcal Electronic energy + Delta-G solvation = -18427.620619 eV Core-core repulsion = 15324.244130 eV Total energy + Delta-G solvation = -3103.376489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.71418 -40.86669 -38.31993 -36.83918 -35.12515 -33.55998 -31.81959 -31.21273 -28.29231 -27.15446 -25.91865 -25.31266 -23.39786 -22.14908 -20.73461 -19.76303 -19.24430 -18.69821 -18.05051 -17.40302 -16.92399 -16.46914 -15.89995 -15.75522 -15.51409 -15.11204 -14.85436 -14.36587 -14.18169 -13.99517 -13.41231 -13.13781 -12.94748 -12.88244 -12.72298 -12.51679 -12.26093 -11.83358 -11.67731 -11.42715 -11.25886 -10.77682 -10.63732 -10.54233 -9.92031 -9.82061 -8.20435 -6.30273 -0.66580 -0.01956 0.21231 0.52560 0.78549 1.41471 1.42712 1.50596 1.59314 1.93803 2.21668 2.40771 2.53697 3.13698 3.58172 3.62546 3.73977 3.97120 4.07543 4.17273 4.23625 4.39255 4.61120 4.74592 4.77354 4.86697 5.04807 5.47213 5.65903 5.80955 5.94224 6.21631 6.41906 6.51845 6.84376 6.92252 7.38586 8.90226 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032274 B = 0.003051 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.362044 B = 9176.606502 C = 9509.506367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.127 4.127 11 C 0.194 3.806 12 H 0.122 0.878 13 N -0.832 5.832 14 C 0.218 3.782 15 N -0.484 5.484 16 C 0.228 3.772 17 C 0.101 3.899 18 C -0.222 4.222 19 S 0.247 5.753 20 C 0.022 3.978 21 N -0.489 5.489 22 N -0.381 5.381 23 O 0.085 5.915 24 H 0.264 0.736 25 H 0.018 0.982 26 H -0.001 1.001 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.368 0.632 30 H 0.353 0.647 31 H 0.197 0.803 32 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.593 -22.073 3.260 24.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.168 4.168 11 C 0.080 3.920 12 H 0.139 0.861 13 N -0.366 5.366 14 C -0.003 4.003 15 N -0.217 5.217 16 C -0.044 4.044 17 C -0.032 4.032 18 C -0.366 4.366 19 S 0.500 5.500 20 C -0.276 4.276 21 N -0.203 5.203 22 N -0.089 5.089 23 O 0.026 5.974 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.018 0.982 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.185 0.815 30 H 0.167 0.833 31 H 0.214 0.786 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 11.012 -23.771 3.980 26.499 hybrid contribution -0.015 2.927 -0.728 3.017 sum 10.996 -20.844 3.252 23.790 Atomic orbital electron populations 1.70040 1.07388 1.27871 1.51179 1.25825 0.95729 1.02848 0.94741 0.85620 0.78405 0.78779 0.78975 1.19261 1.20790 1.19748 1.21575 0.93401 0.92426 1.51092 0.92701 1.18960 0.93909 0.91444 0.96324 1.22293 0.99280 0.93157 1.02027 1.19978 0.90289 0.84631 0.97100 0.86068 1.58954 1.18414 1.56664 1.02564 1.29060 0.93068 0.96459 0.81699 1.72113 1.16116 1.06944 1.26555 1.23238 0.94761 0.96955 0.89458 1.16957 0.99412 0.96891 0.89922 1.27499 1.01913 1.00148 1.07013 1.83727 1.36890 1.30540 0.98821 1.29046 0.97430 0.94418 1.06729 1.66011 1.27855 1.20419 1.06007 1.74821 1.16239 1.05484 1.12374 1.85227 1.39127 1.34634 1.38404 0.92673 0.96401 0.98216 0.92921 0.91392 0.81472 0.83324 0.78577 0.74193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.45 0.28 -53.43 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -29.75 9.11 25.60 0.23 -29.52 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.48 4.74 29.85 0.14 1.62 16 10 C -0.13 -4.88 4.78 30.59 0.15 -4.74 16 11 C 0.19 6.44 3.35 44.17 0.15 6.59 16 12 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 13 N -0.83 -24.29 9.17 -171.79 -1.58 -25.86 16 14 C 0.22 7.48 7.30 88.35 0.64 8.13 16 15 N -0.48 -18.00 11.58 -302.34 -3.50 -21.50 16 16 C 0.23 7.79 8.01 137.19 1.10 8.89 16 17 C 0.10 2.85 6.72 40.93 0.27 3.12 16 18 C -0.22 -4.35 11.11 67.06 0.74 -3.60 16 19 S 0.25 2.73 23.21 -56.49 -1.31 1.42 16 20 C 0.02 0.35 12.19 130.70 1.59 1.94 16 21 N -0.49 -13.13 10.55 -192.81 -2.03 -15.16 16 22 N -0.38 -12.50 12.09 -58.95 -0.71 -13.22 16 23 O 0.09 2.80 11.27 74.52 0.84 3.64 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.02 0.85 6.87 -2.39 -0.02 0.84 16 26 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.37 10.87 7.55 -89.69 -0.68 10.19 16 30 H 0.35 9.33 8.97 -89.70 -0.80 8.52 16 31 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.24 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -69.13 302.90 -0.79 -69.92 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -0.29 Total: 15.66 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 5.49 Total: -6.71 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -7.54 Total: -129.17 kcal Atomic # 8 Polarization: 2.80 SS G_CDS: 0.84 Total: 3.64 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -69.13 -0.79 -69.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261442414.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.931 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds