Wall clock time and date at job start Tue Mar 31 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47222 * 239.99848 * 3 2 1 5 5 H 1.48500 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47122 * 119.99694 * 3 2 1 7 7 C 1.37877 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47183 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46926 * 179.97438 * 10 9 7 12 12 C 1.81404 * 102.99772 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46710 * 180.02562 * 12 11 10 14 14 N 1.31253 * 126.20153 * 90.02933 * 13 12 11 15 15 N 1.28814 * 110.03967 * 179.97438 * 14 13 12 16 16 C 1.31387 * 109.25736 * 359.97438 * 15 14 13 17 17 C 1.46889 * 134.26558 * 180.02562 * 16 15 14 18 18 O 1.21744 * 120.78517 * 0.02562 * 17 16 15 19 19 N 1.35149 * 118.43196 * 179.97438 * 17 16 15 20 20 H 0.97004 * 119.85957 * 180.02562 * 19 17 16 21 21 C 1.38152 * 120.28959 * 0.02562 * 19 17 16 22 22 C 1.32818 * 121.84291 * 359.97438 * 21 19 17 23 23 N 1.34482 * 126.19809 * 269.97919 * 13 12 11 24 24 H 0.97000 * 120.00520 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47043 * 59.99617 * 9 7 2 26 26 H 1.09002 * 109.46887 * 299.99816 * 9 7 2 27 27 H 1.08998 * 109.47140 * 60.00007 * 10 9 7 28 28 H 1.09002 * 109.46951 * 299.99645 * 10 9 7 29 29 H 1.09000 * 109.47070 * 60.00476 * 12 11 10 30 30 H 1.09001 * 109.47321 * 299.99965 * 12 11 10 31 31 H 1.07996 * 119.08032 * 180.02562 * 21 19 17 32 32 H 1.07996 * 119.45429 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 16 1.3383 -5.2330 -0.0021 12 6 2.6651 -6.4702 -0.0025 13 6 2.0634 -7.8519 -0.0037 14 7 1.7548 -8.5621 -1.0634 15 7 1.2611 -9.6968 -0.7059 16 6 1.2325 -9.7629 0.6060 17 6 0.7916 -10.7777 1.5721 18 8 0.3307 -11.8393 1.1941 19 7 0.9106 -10.5057 2.8906 20 1 0.6262 -11.1612 3.5466 21 6 1.4355 -9.2980 3.3083 22 6 1.8376 -8.3725 2.4446 23 7 1.7463 -8.5810 1.0809 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8880 27 1 2.8713 -3.6047 0.8890 28 1 2.8726 -3.6039 -0.8910 29 1 3.2812 -6.3425 0.8876 30 1 3.2813 -6.3418 -0.8924 31 1 1.5221 -9.1012 4.3666 32 1 2.2418 -7.4415 2.8137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262159820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:27 Heat of formation + Delta-G solvation = 63.312262 kcal Electronic energy + Delta-G solvation = -18221.727211 eV Core-core repulsion = 15117.496339 eV Total energy + Delta-G solvation = -3104.230872 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.95017 -40.48548 -37.83950 -34.84768 -33.78429 -32.82303 -30.97864 -30.51477 -28.36943 -25.39150 -25.26110 -24.35128 -21.89127 -21.05174 -19.40692 -19.15532 -18.23267 -17.32694 -16.61575 -16.11205 -15.90037 -15.35733 -14.88251 -14.57899 -14.52292 -14.19506 -13.70200 -13.28561 -13.22425 -13.10314 -12.17980 -12.01952 -11.64915 -11.63626 -11.16607 -11.07348 -10.91561 -10.72713 -10.30136 -10.04169 -9.78445 -9.43393 -9.19153 -8.70225 -8.49125 -7.39703 -6.12901 -4.18461 0.39177 0.90702 1.59043 1.89226 2.02598 2.60432 2.85126 2.92524 3.25611 3.31118 3.32695 3.44130 3.71816 4.12631 4.29083 4.35718 4.41767 4.90011 4.95331 5.22776 5.24151 5.38910 5.52056 5.83487 5.85292 6.01449 6.05271 6.48362 6.58039 7.16942 7.46494 7.54145 7.81907 8.15620 8.17970 8.86189 9.46029 10.97738 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.003063 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.858387 B = 9139.536012 C = 9415.673485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.060 4.060 11 S -0.250 6.250 12 C -0.020 4.020 13 C 0.231 3.769 14 N -0.259 5.259 15 N -0.203 5.203 16 C 0.099 3.901 17 C 0.601 3.399 18 O -0.483 6.483 19 N -0.638 5.638 20 H 0.430 0.570 21 C 0.088 3.912 22 C -0.020 4.020 23 N -0.383 5.383 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.191 0.809 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 -17.524 10.784 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.208 4.208 11 S -0.023 6.023 12 C -0.170 4.170 13 C -0.033 4.033 14 N -0.104 5.104 15 N -0.049 5.049 16 C -0.163 4.163 17 C 0.387 3.613 18 O -0.352 6.352 19 N -0.283 5.283 20 H 0.270 0.730 21 C -0.033 4.033 22 C -0.139 4.139 23 N -0.070 5.070 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.208 0.792 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.368 -18.536 8.947 21.041 hybrid contribution 1.770 1.417 1.647 2.803 sum 6.138 -17.119 10.594 21.047 Atomic orbital electron populations 1.69952 1.06106 1.27135 1.49589 1.25010 0.94897 0.99347 0.94923 0.86568 0.79522 0.82699 0.78698 1.20073 1.21143 1.20146 1.21023 0.92971 0.90085 1.52309 0.92388 1.18911 0.93400 0.89082 0.98715 1.23820 1.01610 0.91741 1.03653 1.87446 1.14535 1.02274 1.98071 1.21667 1.00073 0.87623 1.07634 1.23949 1.01492 0.96261 0.81638 1.74895 1.14494 0.98930 1.22048 1.74655 1.12383 1.12042 1.05833 1.24514 1.08993 0.89190 0.93623 1.16449 0.78799 0.85163 0.80922 1.90994 1.42657 1.23567 1.78024 1.43378 1.59185 1.18094 1.07601 0.73041 1.21408 0.96940 0.84508 1.00460 1.21105 1.10795 1.03235 0.78726 1.43500 1.42409 1.14060 1.07024 0.92613 0.95325 0.95524 0.90996 0.90724 0.87984 0.86131 0.79201 0.79678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -13.96 9.11 -34.44 -0.31 -14.27 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.93 4.98 -27.88 -0.14 0.79 16 10 C -0.06 -1.13 5.88 37.16 0.22 -0.91 16 11 S -0.25 -4.21 21.72 -107.50 -2.33 -6.54 16 12 C -0.02 -0.25 6.47 36.01 0.23 -0.02 16 13 C 0.23 3.20 7.37 -155.29 -1.15 2.06 16 14 N -0.26 -4.35 12.23 32.73 0.40 -3.95 16 15 N -0.20 -3.46 12.29 32.34 0.40 -3.06 16 16 C 0.10 1.39 8.12 -154.30 -1.25 0.14 16 17 C 0.60 6.98 7.97 -12.59 -0.10 6.88 16 18 O -0.48 -7.07 17.99 5.15 0.09 -6.98 16 19 N -0.64 -3.84 5.38 -13.15 -0.07 -3.91 16 20 H 0.43 1.22 8.92 -40.82 -0.36 0.86 16 21 C 0.09 0.35 11.09 -16.56 -0.18 0.17 16 22 C -0.02 -0.14 10.87 -16.52 -0.18 -0.32 16 23 N -0.38 -4.52 2.97 -58.39 -0.17 -4.69 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 28 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 29 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.12 1.39 8.14 -51.92 -0.42 0.97 16 31 H 0.19 -0.19 8.06 -52.49 -0.42 -0.62 16 32 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 303.99 15.07 4.58 4.58 Total: -1.00 -35.69 303.99 -7.64 -43.33 By element: Atomic # 1 Polarization: -2.08 SS G_CDS: -3.29 Total: -5.37 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.96 Total: -3.91 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 1.29 Total: -40.75 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.09 Total: -6.98 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.33 Total: -6.54 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.69 -7.64 -43.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262159820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.646 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds