Wall clock time and date at job start Tue Mar 31 2020 01:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47222 * 239.99848 * 3 2 1 5 5 H 1.48500 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47122 * 119.99694 * 3 2 1 7 7 C 1.37877 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47183 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46926 * 179.97438 * 10 9 7 12 12 C 1.81404 * 102.99772 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46710 * 180.02562 * 12 11 10 14 14 N 1.31253 * 126.20153 * 90.02933 * 13 12 11 15 15 N 1.28814 * 110.03967 * 179.97438 * 14 13 12 16 16 C 1.31387 * 109.25736 * 359.97438 * 15 14 13 17 17 C 1.46889 * 134.26558 * 180.02562 * 16 15 14 18 18 O 1.21744 * 120.78517 * 0.02562 * 17 16 15 19 19 N 1.35149 * 118.43196 * 179.97438 * 17 16 15 20 20 H 0.97004 * 119.85957 * 180.02562 * 19 17 16 21 21 C 1.38152 * 120.28959 * 0.02562 * 19 17 16 22 22 C 1.32818 * 121.84291 * 359.97438 * 21 19 17 23 23 N 1.34482 * 126.19809 * 269.97919 * 13 12 11 24 24 H 0.97000 * 120.00520 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47043 * 59.99617 * 9 7 2 26 26 H 1.09002 * 109.46887 * 299.99816 * 9 7 2 27 27 H 1.08998 * 109.47140 * 60.00007 * 10 9 7 28 28 H 1.09002 * 109.46951 * 299.99645 * 10 9 7 29 29 H 1.09000 * 109.47070 * 60.00476 * 12 11 10 30 30 H 1.09001 * 109.47321 * 299.99965 * 12 11 10 31 31 H 1.07996 * 119.08032 * 180.02562 * 21 19 17 32 32 H 1.07996 * 119.45429 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 16 1.3383 -5.2330 -0.0021 12 6 2.6651 -6.4702 -0.0025 13 6 2.0634 -7.8519 -0.0037 14 7 1.7548 -8.5621 -1.0634 15 7 1.2611 -9.6968 -0.7059 16 6 1.2325 -9.7629 0.6060 17 6 0.7916 -10.7777 1.5721 18 8 0.3307 -11.8393 1.1941 19 7 0.9106 -10.5057 2.8906 20 1 0.6262 -11.1612 3.5466 21 6 1.4355 -9.2980 3.3083 22 6 1.8376 -8.3725 2.4446 23 7 1.7463 -8.5810 1.0809 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8880 27 1 2.8713 -3.6047 0.8890 28 1 2.8726 -3.6039 -0.8910 29 1 3.2812 -6.3425 0.8876 30 1 3.2813 -6.3418 -0.8924 31 1 1.5221 -9.1012 4.3666 32 1 2.2418 -7.4415 2.8137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262159820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:26 Heat of formation + Delta-G solvation = 38.490260 kcal Electronic energy + Delta-G solvation = -18222.803574 eV Core-core repulsion = 15117.496339 eV Total energy + Delta-G solvation = -3105.307235 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.90917 -41.31323 -38.66288 -35.75173 -35.70680 -33.80715 -32.88063 -31.19395 -29.35927 -27.26866 -26.24601 -25.13011 -23.34325 -22.35828 -20.21824 -19.96452 -18.95557 -18.63767 -18.29467 -17.15367 -16.95196 -16.50079 -16.26454 -15.83279 -15.65536 -15.08587 -14.89517 -14.45644 -14.27577 -13.88627 -13.87479 -13.48458 -13.08160 -12.87375 -12.51981 -12.47561 -12.16563 -12.06795 -11.92797 -11.67759 -11.51808 -10.94102 -10.60375 -10.57134 -9.33061 -8.72486 -8.20350 -6.33609 -0.50266 0.10625 0.53868 1.03325 1.31399 1.43680 1.47185 1.51495 1.55573 1.69592 2.00865 2.43199 2.66078 2.92203 3.13778 3.30231 3.50262 4.00230 4.08679 4.27341 4.33330 4.40022 4.41533 4.54909 4.85159 4.92120 5.21647 5.42756 5.43011 5.53231 5.75915 5.77103 6.13227 6.46136 6.81736 7.11629 7.36320 8.91136 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.003063 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.858387 B = 9139.536012 C = 9415.673485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.042 3.958 10 C -0.045 4.045 11 S -0.289 6.289 12 C 0.003 3.997 13 C 0.218 3.782 14 N -0.296 5.296 15 N -0.256 5.256 16 C 0.087 3.913 17 C 0.597 3.403 18 O -0.524 6.524 19 N -0.612 5.612 20 H 0.449 0.551 21 C 0.127 3.873 22 C -0.065 4.065 23 N -0.368 5.368 24 H 0.264 0.736 25 H -0.009 1.009 26 H 0.000 1.000 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.257 0.743 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 -17.403 13.802 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.578 4.578 8 H 0.091 0.909 9 C 0.003 3.997 10 C -0.193 4.193 11 S -0.063 6.063 12 C -0.147 4.147 13 C -0.048 4.048 14 N -0.141 5.141 15 N -0.103 5.103 16 C -0.177 4.177 17 C 0.382 3.618 18 O -0.398 6.398 19 N -0.256 5.256 20 H 0.293 0.707 21 C 0.006 3.994 22 C -0.181 4.181 23 N -0.052 5.052 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.018 0.982 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.162 0.838 30 H 0.147 0.853 31 H 0.272 0.728 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.516 -18.406 12.028 22.932 hybrid contribution 1.081 1.243 0.866 1.861 sum 7.597 -17.163 12.893 22.771 Atomic orbital electron populations 1.70106 1.08040 1.28050 1.51123 1.26008 0.95698 1.03531 0.94511 0.85434 0.78146 0.77675 0.79398 1.19152 1.21341 1.18584 1.21536 0.93886 0.91124 1.51302 0.90935 1.18685 0.93845 0.91500 0.95621 1.23421 1.00045 0.90762 1.05103 1.87550 1.17375 1.03061 1.98275 1.21692 0.98043 0.84744 1.10191 1.24008 1.02268 0.96693 0.81859 1.74737 1.15606 0.99558 1.24201 1.74512 1.14754 1.12945 1.08057 1.24914 1.08767 0.90555 0.93465 1.16471 0.78746 0.84195 0.82347 1.90971 1.44836 1.24924 1.79023 1.43357 1.57180 1.19313 1.05794 0.70671 1.22486 0.92305 0.81857 1.02708 1.21997 1.13588 1.05939 0.76603 1.43678 1.40391 1.12592 1.08570 0.92687 0.99025 0.98194 0.88695 0.89980 0.83765 0.85305 0.72754 0.76659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 42.03 29.54 68.60 2.03 44.05 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.54 -28.66 9.11 25.60 0.23 -28.43 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.04 2.11 4.98 29.85 0.15 2.26 16 10 C -0.05 -1.66 5.88 71.98 0.42 -1.23 16 11 S -0.29 -9.55 21.72 -56.49 -1.23 -10.78 16 12 C 0.00 0.06 6.47 71.24 0.46 0.52 16 13 C 0.22 5.86 7.37 138.09 1.02 6.88 16 14 N -0.30 -10.26 12.23 -50.37 -0.62 -10.87 16 15 N -0.26 -9.14 12.29 -51.59 -0.63 -9.78 16 16 C 0.09 2.43 8.12 135.97 1.10 3.54 16 17 C 0.60 13.29 7.97 86.45 0.69 13.98 16 18 O -0.52 -15.53 17.99 -4.49 -0.08 -15.62 16 19 N -0.61 -5.13 5.38 -313.50 -1.69 -6.82 16 20 H 0.45 0.67 8.92 -92.71 -0.83 -0.16 16 21 C 0.13 0.32 11.09 82.52 0.92 1.23 16 22 C -0.06 -0.63 10.87 82.50 0.90 0.27 16 23 N -0.37 -8.06 2.97 -338.66 -1.01 -9.07 16 24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 28 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.26 -2.62 8.06 -2.91 -0.02 -2.64 16 32 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -84.98 303.99 3.75 -81.23 By element: Atomic # 1 Polarization: -6.95 SS G_CDS: 0.34 Total: -6.61 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 6.35 Total: -0.47 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -3.66 Total: -91.80 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.08 Total: -15.62 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.23 Total: -10.78 kcal Total: -84.98 3.75 -81.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262159820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.717 kcal (2) G-P(sol) polarization free energy of solvation -84.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds