Wall clock time and date at job start Tue Mar 31 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48498 * 109.46847 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47279 * 119.99757 * 3 2 1 6 6 H 1.48498 * 109.47032 * 239.99821 * 3 2 1 7 7 C 1.39017 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00105 * 172.01848 * 7 2 1 9 9 N 1.36915 * 119.99522 * 352.01670 * 7 2 1 10 10 C 1.34781 * 119.99679 * 150.17099 * 9 7 2 11 11 O 1.21652 * 119.99894 * 356.49821 * 10 9 7 12 12 C 1.47269 * 120.00116 * 176.49381 * 10 9 7 13 13 C 1.39830 * 120.19877 * 48.54964 * 12 10 9 14 14 C 1.37673 * 119.93166 * 180.02562 * 13 12 10 15 15 C 1.38774 * 120.34838 * 359.97438 * 14 13 12 16 16 Cl 1.73598 * 119.80050 * 179.97438 * 15 14 13 17 17 C 1.38131 * 120.40240 * 0.02562 * 15 14 13 18 18 C 1.38867 * 120.05765 * 359.71891 * 17 15 14 19 19 N 1.38888 * 120.17297 * 180.30432 * 18 17 15 20 20 C 1.46500 * 120.00322 * 330.16861 * 9 7 2 21 21 C 1.52996 * 117.49796 * 313.61689 * 20 9 7 22 22 C 1.52995 * 117.49809 * 244.95686 * 20 9 7 23 23 H 0.96999 * 120.00454 * 355.03485 * 1 2 3 24 24 H 1.07997 * 120.02856 * 0.02562 * 13 12 10 25 25 H 1.08007 * 119.82451 * 180.02562 * 14 13 12 26 26 H 1.08000 * 119.96689 * 180.02562 * 17 15 14 27 27 H 0.97002 * 120.00061 * 186.67553 * 19 18 17 28 28 H 0.96998 * 119.99936 * 6.67455 * 19 18 17 29 29 H 1.09002 * 115.54549 * 99.28948 * 20 9 7 30 30 H 1.09001 * 117.50057 * 0.02562 * 21 20 9 31 31 H 1.09004 * 117.49613 * 145.02072 * 21 20 9 32 32 H 1.09000 * 117.50014 * 214.98085 * 22 20 9 33 33 H 1.09000 * 117.49942 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 1.2829 2.7464 -0.0006 5 1 3.1016 1.6965 1.2125 6 1 3.1016 1.6964 -1.2125 7 6 2.0090 -1.2039 0.0005 8 1 3.0811 -1.2085 -0.1293 9 7 1.3343 -2.3838 0.1658 10 6 1.8051 -3.5139 -0.3980 11 8 2.7937 -3.4743 -1.1059 12 6 1.1229 -4.7966 -0.1569 13 6 -0.2642 -4.8941 -0.3043 14 6 -0.8964 -6.0958 -0.0771 15 6 -0.1641 -7.2134 0.2976 16 17 -0.9759 -8.7215 0.5812 17 6 1.2068 -7.1330 0.4473 18 6 1.8622 -5.9306 0.2172 19 7 3.2412 -5.8487 0.3609 20 6 0.1007 -2.4179 0.9553 21 6 0.1072 -1.7014 2.3071 22 6 0.1137 -3.2311 2.2512 23 1 -0.4851 0.8368 0.0727 24 1 -0.8389 -4.0275 -0.5961 25 1 -1.9678 -6.1692 -0.1918 26 1 1.7698 -8.0074 0.7388 27 1 3.6855 -4.9889 0.2949 28 1 3.7601 -6.6512 0.5272 29 1 -0.8255 -2.4010 0.3810 30 1 1.0291 -1.2043 2.6088 31 1 -0.8151 -1.2134 2.6224 32 1 -0.8041 -3.7488 2.5297 33 1 1.0400 -3.7410 2.5161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292149453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:10 Heat of formation + Delta-G solvation = 19.948076 kcal Electronic energy + Delta-G solvation = -19905.651536 eV Core-core repulsion = 16765.203794 eV Total energy + Delta-G solvation = -3140.447742 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75935 -37.92427 -36.43683 -35.96973 -34.05929 -33.03993 -31.30837 -30.30524 -28.43767 -25.27404 -23.18354 -22.00305 -21.54406 -21.22097 -19.27866 -17.20613 -16.74863 -16.67588 -16.30989 -15.20353 -14.80142 -14.38249 -14.13533 -13.85297 -13.71915 -13.41129 -13.04863 -12.73456 -12.27798 -11.82384 -11.66525 -11.37518 -11.17306 -11.08452 -10.74179 -10.70459 -10.52763 -10.40426 -10.15810 -9.83309 -9.38793 -8.88081 -8.56223 -8.30157 -7.72386 -7.23640 -6.33995 -3.98433 1.38177 1.86469 2.30301 3.15774 3.22168 3.25043 3.66949 4.06547 4.23335 4.25555 4.71355 4.76334 5.11202 5.15941 5.42636 5.46441 5.72044 5.81284 5.88312 5.99279 6.11498 6.14324 6.34427 6.41822 6.56927 6.73344 6.78309 6.94830 6.99746 7.13488 7.49865 7.74928 8.03573 8.14962 8.43266 9.11136 9.33382 9.91326 10.69442 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029436 B = 0.005365 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.989255 B = 5217.587493 C = 5711.420881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.044 3.956 3 Si 0.921 3.079 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.312 4.312 8 H 0.094 0.906 9 N -0.406 5.406 10 C 0.495 3.505 11 O -0.586 6.586 12 C -0.164 4.164 13 C -0.027 4.027 14 C -0.180 4.180 15 C 0.021 3.979 16 Cl -0.087 7.087 17 C -0.206 4.206 18 C 0.264 3.736 19 N -0.859 5.859 20 C 0.129 3.871 21 C -0.145 4.145 22 C -0.212 4.212 23 H 0.269 0.731 24 H 0.136 0.864 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.412 0.588 28 H 0.394 0.606 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 -10.282 4.353 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.162 4.162 3 Si 0.747 3.253 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.440 4.440 8 H 0.112 0.888 9 N -0.122 5.122 10 C 0.284 3.716 11 O -0.471 6.471 12 C -0.172 4.172 13 C -0.047 4.047 14 C -0.200 4.200 15 C -0.007 4.007 16 Cl -0.058 7.058 17 C -0.230 4.230 18 C 0.155 3.845 19 N -0.397 5.397 20 C 0.023 3.977 21 C -0.182 4.182 22 C -0.250 4.250 23 H 0.079 0.921 24 H 0.153 0.847 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.244 0.756 28 H 0.221 0.779 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.016 -10.164 3.967 11.096 hybrid contribution 0.492 0.771 0.170 0.931 sum -1.524 -9.393 4.137 10.376 Atomic orbital electron populations 1.69868 1.05864 1.27951 1.46512 1.25318 0.95405 0.99486 0.95998 0.86088 0.79114 0.80957 0.79097 1.20883 1.19971 1.19753 1.19467 0.92568 0.82256 1.49677 0.88797 1.42988 1.21126 1.06776 1.41357 1.17742 0.86991 0.83468 0.83350 1.90620 1.28908 1.86412 1.41193 1.19787 0.93968 0.94568 1.08900 1.21132 0.92789 0.96872 0.93877 1.20606 0.99911 0.91627 1.07896 1.20584 0.92023 0.86555 1.01494 1.98335 1.79750 1.32943 1.94782 1.20187 0.92796 0.97386 1.12643 1.17451 0.84562 0.91882 0.90623 1.42466 1.03987 1.13006 1.80278 1.21143 0.89454 1.01446 0.85614 1.22749 1.02221 0.92286 1.00953 1.23463 1.01875 0.95063 1.04613 0.92108 0.84650 0.85497 0.85507 0.75610 0.77891 0.87675 0.89248 0.89763 0.89501 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.91 10.80 55.50 0.60 -21.32 16 2 C 0.04 1.10 4.85 -17.45 -0.08 1.02 16 3 Si 0.92 20.09 29.56 -169.99 -5.03 15.07 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.31 -8.30 8.68 -14.99 -0.13 -8.43 16 8 H 0.09 2.60 7.57 -52.49 -0.40 2.21 16 9 N -0.41 -9.93 2.91 -108.99 -0.32 -10.25 16 10 C 0.50 11.82 6.55 -12.59 -0.08 11.74 16 11 O -0.59 -15.65 15.38 5.23 0.08 -15.57 16 12 C -0.16 -3.22 4.53 -104.80 -0.48 -3.69 16 13 C -0.03 -0.47 7.70 -39.19 -0.30 -0.77 16 14 C -0.18 -2.70 9.80 -39.59 -0.39 -3.08 16 15 C 0.02 0.30 6.32 -39.42 -0.25 0.05 16 16 Cl -0.09 -1.10 28.94 -51.86 -1.50 -2.60 16 17 C -0.21 -3.05 9.66 -39.39 -0.38 -3.43 16 18 C 0.26 4.53 6.74 -83.60 -0.56 3.97 16 19 N -0.86 -13.29 8.86 32.55 0.29 -13.00 16 20 C 0.13 2.74 2.28 -67.93 -0.15 2.59 16 21 C -0.14 -2.89 8.65 -26.70 -0.23 -3.12 16 22 C -0.21 -3.85 8.67 -26.70 -0.23 -4.08 16 23 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 24 H 0.14 2.39 6.24 -52.49 -0.33 2.06 16 25 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 26 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.41 7.26 6.80 -40.82 -0.28 6.99 16 28 H 0.39 4.62 8.84 -40.82 -0.36 4.26 16 29 H 0.11 2.29 6.83 -51.93 -0.35 1.94 16 30 H 0.09 1.92 7.94 -51.93 -0.41 1.51 16 31 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 295.27 15.07 4.45 4.45 Total: -1.00 -28.46 295.27 -8.08 -36.53 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -3.38 Total: 13.93 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.27 Total: -7.24 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.57 Total: -44.57 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.07 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.46 -8.08 -36.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292149453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.480 kcal (2) G-P(sol) polarization free energy of solvation -28.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds