Wall clock time and date at job start Tue Mar 31 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48498 * 109.46847 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47279 * 119.99757 * 3 2 1 6 6 H 1.48498 * 109.47032 * 239.99821 * 3 2 1 7 7 C 1.39017 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00105 * 172.01848 * 7 2 1 9 9 N 1.36915 * 119.99522 * 352.01670 * 7 2 1 10 10 C 1.34781 * 119.99679 * 150.17099 * 9 7 2 11 11 O 1.21652 * 119.99894 * 356.49821 * 10 9 7 12 12 C 1.47269 * 120.00116 * 176.49381 * 10 9 7 13 13 C 1.39830 * 120.19877 * 48.54964 * 12 10 9 14 14 C 1.37673 * 119.93166 * 180.02562 * 13 12 10 15 15 C 1.38774 * 120.34838 * 359.97438 * 14 13 12 16 16 Cl 1.73598 * 119.80050 * 179.97438 * 15 14 13 17 17 C 1.38131 * 120.40240 * 0.02562 * 15 14 13 18 18 C 1.38867 * 120.05765 * 359.71891 * 17 15 14 19 19 N 1.38888 * 120.17297 * 180.30432 * 18 17 15 20 20 C 1.46500 * 120.00322 * 330.16861 * 9 7 2 21 21 C 1.52996 * 117.49796 * 313.61689 * 20 9 7 22 22 C 1.52995 * 117.49809 * 244.95686 * 20 9 7 23 23 H 0.96999 * 120.00454 * 355.03485 * 1 2 3 24 24 H 1.07997 * 120.02856 * 0.02562 * 13 12 10 25 25 H 1.08007 * 119.82451 * 180.02562 * 14 13 12 26 26 H 1.08000 * 119.96689 * 180.02562 * 17 15 14 27 27 H 0.97002 * 120.00061 * 186.67553 * 19 18 17 28 28 H 0.96998 * 119.99936 * 6.67455 * 19 18 17 29 29 H 1.09002 * 115.54549 * 99.28948 * 20 9 7 30 30 H 1.09001 * 117.50057 * 0.02562 * 21 20 9 31 31 H 1.09004 * 117.49613 * 145.02072 * 21 20 9 32 32 H 1.09000 * 117.50014 * 214.98085 * 22 20 9 33 33 H 1.09000 * 117.49942 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 1.2829 2.7464 -0.0006 5 1 3.1016 1.6965 1.2125 6 1 3.1016 1.6964 -1.2125 7 6 2.0090 -1.2039 0.0005 8 1 3.0811 -1.2085 -0.1293 9 7 1.3343 -2.3838 0.1658 10 6 1.8051 -3.5139 -0.3980 11 8 2.7937 -3.4743 -1.1059 12 6 1.1229 -4.7966 -0.1569 13 6 -0.2642 -4.8941 -0.3043 14 6 -0.8964 -6.0958 -0.0771 15 6 -0.1641 -7.2134 0.2976 16 17 -0.9759 -8.7215 0.5812 17 6 1.2068 -7.1330 0.4473 18 6 1.8622 -5.9306 0.2172 19 7 3.2412 -5.8487 0.3609 20 6 0.1007 -2.4179 0.9553 21 6 0.1072 -1.7014 2.3071 22 6 0.1137 -3.2311 2.2512 23 1 -0.4851 0.8368 0.0727 24 1 -0.8389 -4.0275 -0.5961 25 1 -1.9678 -6.1692 -0.1918 26 1 1.7698 -8.0074 0.7388 27 1 3.6855 -4.9889 0.2949 28 1 3.7601 -6.6512 0.5272 29 1 -0.8255 -2.4010 0.3810 30 1 1.0291 -1.2043 2.6088 31 1 -0.8151 -1.2134 2.6224 32 1 -0.8041 -3.7488 2.5297 33 1 1.0400 -3.7410 2.5161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292149453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:09 Heat of formation + Delta-G solvation = 2.967499 kcal Electronic energy + Delta-G solvation = -19906.387869 eV Core-core repulsion = 16765.203794 eV Total energy + Delta-G solvation = -3141.184075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28449 -39.42495 -37.92385 -37.36128 -35.32326 -34.87973 -33.10963 -31.72252 -29.72672 -27.12046 -24.65816 -23.38208 -23.10456 -22.79427 -20.89512 -18.88420 -18.23002 -17.98946 -17.83180 -17.06512 -16.26969 -15.87346 -15.84326 -15.18449 -15.15810 -14.86583 -14.51926 -14.24914 -13.90246 -13.40896 -12.93091 -12.90009 -12.87910 -12.59919 -12.37780 -12.23719 -12.13596 -11.82567 -11.58454 -11.39650 -11.00850 -10.67893 -10.29592 -9.66450 -9.59295 -8.51770 -8.25631 -5.98751 0.06890 0.61394 1.15568 1.39851 1.42425 1.50363 2.03033 2.27867 2.79271 2.98262 3.01160 3.13625 3.29740 3.89297 3.92598 4.23752 4.28512 4.38208 4.46771 4.56033 4.60390 4.86811 4.87569 5.06908 5.15238 5.33243 5.40158 5.44573 5.48212 5.51440 5.72810 6.14174 6.43609 6.56091 6.92321 7.18927 7.47577 8.05560 8.75102 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.029436 B = 0.005365 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.989255 B = 5217.587493 C = 5711.420881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.015 3.985 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.281 1.281 7 C -0.346 4.346 8 H 0.067 0.933 9 N -0.418 5.418 10 C 0.489 3.511 11 O -0.629 6.629 12 C -0.196 4.196 13 C -0.029 4.029 14 C -0.172 4.172 15 C 0.026 3.974 16 Cl -0.061 7.061 17 C -0.196 4.196 18 C 0.258 3.742 19 N -0.855 5.855 20 C 0.112 3.888 21 C -0.147 4.147 22 C -0.174 4.174 23 H 0.273 0.727 24 H 0.126 0.874 25 H 0.152 0.848 26 H 0.155 0.845 27 H 0.400 0.600 28 H 0.411 0.589 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -11.988 5.452 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.189 4.189 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.207 1.207 7 C -0.473 4.473 8 H 0.085 0.915 9 N -0.134 5.134 10 C 0.281 3.719 11 O -0.518 6.518 12 C -0.204 4.204 13 C -0.048 4.048 14 C -0.193 4.193 15 C -0.001 4.001 16 Cl -0.031 7.031 17 C -0.220 4.220 18 C 0.148 3.852 19 N -0.393 5.393 20 C 0.008 3.992 21 C -0.185 4.185 22 C -0.212 4.212 23 H 0.083 0.917 24 H 0.144 0.856 25 H 0.170 0.830 26 H 0.173 0.827 27 H 0.230 0.770 28 H 0.242 0.758 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.404 -11.905 5.093 13.388 hybrid contribution 0.882 1.161 -0.194 1.471 sum -2.521 -10.744 4.899 12.074 Atomic orbital electron populations 1.69931 1.06447 1.28734 1.46127 1.25916 0.96235 1.01570 0.95211 0.85256 0.78170 0.77777 0.78719 1.19541 1.19314 1.20667 1.19412 0.91932 0.84073 1.51922 0.91471 1.43149 1.21852 1.06425 1.42002 1.18462 0.86384 0.84868 0.82223 1.90561 1.30883 1.87419 1.42902 1.19521 0.94977 0.93193 1.12700 1.21048 0.91839 0.97737 0.94211 1.20781 1.01077 0.90639 1.06813 1.20720 0.92112 0.87448 0.99841 1.98353 1.79207 1.31114 1.94475 1.20424 0.93126 0.97133 1.11315 1.17597 0.84992 0.91972 0.90659 1.42445 1.03800 1.13243 1.79835 1.21097 0.87886 1.04206 0.86016 1.22717 1.01822 0.93787 1.00174 1.23406 1.02914 0.93824 1.01023 0.91733 0.85633 0.83017 0.82739 0.76991 0.75850 0.88463 0.91374 0.88374 0.86350 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.79 10.80 21.68 0.23 -44.56 16 2 C 0.02 0.78 4.85 84.95 0.41 1.20 16 3 Si 0.98 41.86 29.56 68.60 2.03 43.89 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.35 -19.21 8.68 84.09 0.73 -18.48 16 8 H 0.07 3.98 7.57 -2.91 -0.02 3.96 16 9 N -0.42 -21.24 2.91 -616.97 -1.79 -23.03 16 10 C 0.49 24.30 6.55 86.62 0.57 24.87 16 11 O -0.63 -35.40 15.38 -4.20 -0.06 -35.46 16 12 C -0.20 -7.68 4.53 -19.98 -0.09 -7.77 16 13 C -0.03 -0.98 7.70 22.52 0.17 -0.80 16 14 C -0.17 -4.69 9.80 22.26 0.22 -4.48 16 15 C 0.03 0.68 6.32 22.37 0.14 0.82 16 16 Cl -0.06 -1.29 28.94 -2.72 -0.08 -1.36 16 17 C -0.20 -5.23 9.66 22.39 0.22 -5.01 16 18 C 0.26 8.55 6.74 38.71 0.26 8.82 16 19 N -0.86 -26.13 8.86 -50.92 -0.45 -26.58 16 20 C 0.11 4.84 2.28 44.99 0.10 4.94 16 21 C -0.15 -5.85 8.65 30.62 0.26 -5.59 16 22 C -0.17 -6.08 8.67 30.62 0.27 -5.82 16 23 H 0.27 13.16 8.32 -92.71 -0.77 12.39 16 24 H 0.13 4.45 6.24 -2.91 -0.02 4.43 16 25 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 26 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 27 H 0.40 14.56 6.80 -92.71 -0.63 13.93 16 28 H 0.41 9.12 8.84 -92.71 -0.82 8.30 16 29 H 0.10 4.30 6.83 -2.39 -0.02 4.28 16 30 H 0.07 2.99 7.94 -2.39 -0.02 2.97 16 31 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -63.20 295.27 2.86 -60.35 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.28 Total: 34.07 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.26 Total: -7.31 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -2.01 Total: -94.17 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.06 Total: -35.46 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.36 kcal Total: -63.20 2.86 -60.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292149453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.313 kcal (2) G-P(sol) polarization free energy of solvation -63.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds