Wall clock time and date at job start Tue Mar 31 2020 01:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47213 * 240.00111 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99739 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46985 * 127.02997 * 359.75399 * 11 9 7 13 13 C 1.50769 * 106.56578 * 179.97438 * 12 11 9 14 14 O 1.21279 * 125.42965 * 179.97438 * 13 12 11 15 15 N 1.34309 * 109.14955 * 359.97438 * 13 12 11 16 16 C 1.46497 * 124.85272 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47341 * 89.97646 * 16 15 13 18 18 C 1.53005 * 109.47265 * 179.97438 * 17 16 15 19 19 F 1.39899 * 109.46916 * 59.99480 * 18 17 16 20 20 F 1.39896 * 109.47123 * 180.02562 * 18 17 16 21 21 F 1.39908 * 109.46881 * 299.99831 * 18 17 16 22 22 C 1.46226 * 110.28737 * 359.73283 * 15 13 12 23 23 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.03900 * 299.27253 * 12 11 9 25 25 H 1.09000 * 110.04150 * 60.72184 * 12 11 9 26 26 H 1.09007 * 109.46688 * 209.97300 * 16 15 13 27 27 H 1.08996 * 109.47139 * 329.97203 * 16 15 13 28 28 H 1.08999 * 109.47125 * 299.99716 * 17 16 15 29 29 H 1.09004 * 109.47244 * 60.00028 * 17 16 15 30 30 H 1.09000 * 109.87995 * 240.70770 * 22 15 13 31 31 H 1.08999 * 109.62137 * 120.02021 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 3.4077 -3.8276 0.0086 13 6 3.6574 -5.3145 0.0164 14 8 4.7484 -5.8441 0.0195 15 7 2.4791 -5.9591 0.0195 16 6 2.3216 -7.4155 0.0277 17 6 2.2667 -7.9145 1.4729 18 6 2.1016 -9.4356 1.4814 19 9 3.1868 -10.0261 0.8250 20 9 2.0508 -9.8918 2.8029 21 9 0.9156 -9.7796 0.8239 22 6 1.3760 -4.9992 0.0206 23 1 -0.4850 0.8400 -0.0004 24 1 3.8404 -3.3806 -0.8865 25 1 3.8390 -3.3721 0.8999 26 1 1.3977 -7.6839 -0.4847 27 1 3.1674 -7.8753 -0.4836 28 1 3.1906 -7.6461 1.9853 29 1 1.4209 -7.4548 1.9841 30 1 0.7689 -5.1331 0.9159 31 1 0.7610 -5.1474 -0.8670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298057009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:26 Heat of formation + Delta-G solvation = -211.192834 kcal Electronic energy + Delta-G solvation = -21851.402568 eV Core-core repulsion = 17718.365899 eV Total energy + Delta-G solvation = -4133.036669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.31573 -47.81303 -47.78705 -40.43156 -37.43875 -36.10657 -34.52508 -32.68827 -31.54070 -27.97278 -27.30705 -25.79659 -23.96399 -22.60397 -20.25873 -19.48778 -18.76093 -18.58572 -17.76813 -17.14042 -16.13458 -16.07263 -15.62783 -15.27112 -14.81108 -14.69502 -14.36613 -14.22285 -14.02542 -13.97058 -13.92463 -13.76446 -13.58228 -13.33686 -12.92041 -12.36744 -12.18492 -12.01790 -11.70500 -11.59457 -11.31938 -11.05231 -10.60925 -10.39434 -9.85685 -9.09351 -8.95057 -7.98640 -7.61811 -6.41435 -4.87935 2.35985 2.60130 2.88190 3.06671 3.12547 3.14047 3.66563 3.78812 3.82597 3.85602 4.15403 4.32073 4.46626 4.62610 4.74958 5.03444 5.23824 5.41958 5.49693 5.60957 5.78733 5.85390 6.03733 6.25912 6.51379 7.20181 7.25124 7.77822 8.09372 8.17780 8.80654 9.09774 10.28053 10.50514 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.035829 B = 0.003751 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.296515 B = 7463.803285 C = 7913.047549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.579 3.421 10 O -0.565 6.565 11 N -0.648 5.648 12 C 0.089 3.911 13 C 0.518 3.482 14 O -0.529 6.529 15 N -0.627 5.627 16 C 0.134 3.866 17 C -0.189 4.189 18 C 0.459 3.541 19 F -0.182 7.182 20 F -0.184 7.184 21 F -0.183 7.183 22 C 0.338 3.662 23 H 0.273 0.727 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 -13.394 1.874 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.091 0.909 9 C 0.387 3.613 10 O -0.446 6.446 11 N -0.393 5.393 12 C -0.038 4.038 13 C 0.307 3.693 14 O -0.405 6.405 15 N -0.362 5.362 16 C 0.011 3.989 17 C -0.229 4.229 18 C 0.404 3.596 19 F -0.163 7.163 20 F -0.165 7.165 21 F -0.164 7.164 22 C 0.130 3.870 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.714 -13.549 1.858 14.171 hybrid contribution 0.396 0.419 0.106 0.586 sum 4.110 -13.130 1.965 13.898 Atomic orbital electron populations 1.69985 1.07151 1.28010 1.33966 1.25739 0.94729 1.00512 0.92422 0.86318 0.79776 0.80406 0.79707 1.19051 1.20393 1.19054 1.20794 0.93775 0.88301 1.54117 0.90852 1.18076 0.86608 0.80035 0.76566 1.90657 1.13530 1.84886 1.55542 1.48888 1.04285 1.04087 1.82021 1.21508 0.86031 0.91656 1.04616 1.21132 0.83611 0.90337 0.74253 1.90723 1.25441 1.73680 1.50658 1.48368 1.08498 1.05570 1.73753 1.21145 1.04850 0.79214 0.93666 1.23372 1.08343 0.88454 1.02732 1.20400 0.73719 0.91990 0.73478 1.93204 1.55306 1.86539 1.81275 1.93197 1.96154 1.91010 1.36138 1.93199 1.48041 1.93916 1.81265 1.21060 0.85659 0.78959 1.01363 0.91614 0.88459 0.88505 0.88624 0.88442 0.86681 0.86579 0.91800 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.39 11.83 55.55 0.66 -20.73 16 2 C 0.09 2.26 5.50 -17.37 -0.10 2.16 16 3 Si 0.91 18.84 29.56 -169.99 -5.02 13.82 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.53 -13.90 9.10 -35.63 -0.32 -14.23 16 8 H 0.07 1.74 7.24 -52.49 -0.38 1.36 16 9 C 0.58 15.22 7.82 -12.99 -0.10 15.12 16 10 O -0.57 -16.97 15.42 5.20 0.08 -16.89 16 11 N -0.65 -13.47 3.36 -179.91 -0.60 -14.07 16 12 C 0.09 1.56 6.28 -4.90 -0.03 1.52 16 13 C 0.52 8.50 8.13 -11.16 -0.09 8.41 16 14 O -0.53 -9.66 17.67 5.56 0.10 -9.56 16 15 N -0.63 -8.98 2.93 -177.58 -0.52 -9.50 16 16 C 0.13 1.46 5.74 -4.05 -0.02 1.44 16 17 C -0.19 -1.81 5.58 -26.73 -0.15 -1.96 16 18 C 0.46 4.51 3.16 37.16 0.12 4.63 16 19 F -0.18 -1.96 16.80 2.25 0.04 -1.92 16 20 F -0.18 -1.94 17.32 2.25 0.04 -1.90 16 21 F -0.18 -1.86 16.80 2.25 0.04 -1.82 16 22 C 0.34 5.69 7.57 -63.72 -0.48 5.20 16 23 H 0.27 6.95 8.29 -40.82 -0.34 6.61 16 24 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 25 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 26 H 0.10 0.87 7.80 -51.92 -0.41 0.46 16 27 H 0.10 1.08 7.64 -51.93 -0.40 0.68 16 28 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -32.02 291.69 -4.84 -36.86 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -2.85 Total: -0.97 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: -1.18 Total: 22.30 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.47 Total: -44.30 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.18 Total: -26.45 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.11 Total: -5.64 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.02 -4.84 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298057009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.334 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds