Wall clock time and date at job start Tue Mar 31 2020 01:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86795 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47213 * 240.00111 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99739 * 3 2 1 7 7 C 1.40047 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99523 * 179.97438 * 7 2 1 9 9 C 1.46368 * 120.00322 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27118 * 9 7 2 12 12 C 1.46985 * 127.02997 * 359.75399 * 11 9 7 13 13 C 1.50769 * 106.56578 * 179.97438 * 12 11 9 14 14 O 1.21279 * 125.42965 * 179.97438 * 13 12 11 15 15 N 1.34309 * 109.14955 * 359.97438 * 13 12 11 16 16 C 1.46497 * 124.85272 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47341 * 89.97646 * 16 15 13 18 18 C 1.53005 * 109.47265 * 179.97438 * 17 16 15 19 19 F 1.39899 * 109.46916 * 59.99480 * 18 17 16 20 20 F 1.39896 * 109.47123 * 180.02562 * 18 17 16 21 21 F 1.39908 * 109.46881 * 299.99831 * 18 17 16 22 22 C 1.46226 * 110.28737 * 359.73283 * 15 13 12 23 23 H 0.96999 * 119.99862 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.03900 * 299.27253 * 12 11 9 25 25 H 1.09000 * 110.04150 * 60.72184 * 12 11 9 26 26 H 1.09007 * 109.46688 * 209.97300 * 16 15 13 27 27 H 1.08996 * 109.47139 * 329.97203 * 16 15 13 28 28 H 1.08999 * 109.47125 * 299.99716 * 17 16 15 29 29 H 1.09004 * 109.47244 * 60.00028 * 17 16 15 30 30 H 1.09000 * 109.87995 * 240.70770 * 22 15 13 31 31 H 1.08999 * 109.62137 * 120.02021 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 3.4077 -3.8276 0.0086 13 6 3.6574 -5.3145 0.0164 14 8 4.7484 -5.8441 0.0195 15 7 2.4791 -5.9591 0.0195 16 6 2.3216 -7.4155 0.0277 17 6 2.2667 -7.9145 1.4729 18 6 2.1016 -9.4356 1.4814 19 9 3.1868 -10.0261 0.8250 20 9 2.0508 -9.8918 2.8029 21 9 0.9156 -9.7796 0.8239 22 6 1.3760 -4.9992 0.0206 23 1 -0.4850 0.8400 -0.0004 24 1 3.8404 -3.3806 -0.8865 25 1 3.8390 -3.3721 0.8999 26 1 1.3977 -7.6839 -0.4847 27 1 3.1674 -7.8753 -0.4836 28 1 3.1906 -7.6461 1.9853 29 1 1.4209 -7.4548 1.9841 30 1 0.7689 -5.1331 0.9159 31 1 0.7610 -5.1474 -0.8670 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298057009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:25 Heat of formation + Delta-G solvation = -232.302656 kcal Electronic energy + Delta-G solvation = -21852.317958 eV Core-core repulsion = 17718.365899 eV Total energy + Delta-G solvation = -4133.952060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.13417 -48.63778 -48.60588 -41.80686 -39.20140 -37.55832 -35.86545 -34.66610 -32.77870 -29.41990 -28.99677 -27.12727 -25.36160 -23.52475 -21.85381 -20.93936 -19.57634 -19.54095 -18.86023 -18.56023 -17.82878 -17.39630 -16.90395 -16.82368 -15.96278 -15.70613 -15.69903 -15.51116 -15.12901 -15.05448 -14.84448 -14.76327 -14.69981 -14.54738 -14.45170 -13.78358 -13.59921 -13.33521 -13.10655 -12.93569 -12.70029 -12.53674 -12.44842 -12.04815 -11.22902 -10.93195 -10.31813 -10.03615 -9.28985 -8.34867 -6.90657 1.23125 1.37679 1.46018 1.46046 1.58807 1.88521 2.20728 2.39208 2.49082 2.84551 2.94999 3.03340 3.22716 3.51796 3.75410 3.78268 4.17375 4.23494 4.35464 4.38105 4.55458 4.56848 4.70930 4.92837 5.19156 5.31388 5.75279 5.95524 6.24740 6.82685 6.85433 7.23078 8.31576 8.59721 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.035829 B = 0.003751 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.296515 B = 7463.803285 C = 7913.047549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.034 3.966 3 Si 0.995 3.005 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.558 4.558 8 H 0.092 0.908 9 C 0.569 3.431 10 O -0.615 6.615 11 N -0.655 5.655 12 C 0.087 3.913 13 C 0.526 3.474 14 O -0.545 6.545 15 N -0.614 5.614 16 C 0.129 3.871 17 C -0.182 4.182 18 C 0.466 3.534 19 F -0.187 7.187 20 F -0.187 7.187 21 F -0.183 7.183 22 C 0.341 3.659 23 H 0.278 0.722 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -13.504 1.976 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.182 4.182 3 Si 0.815 3.185 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.110 0.890 9 C 0.377 3.623 10 O -0.500 6.500 11 N -0.397 5.397 12 C -0.039 4.039 13 C 0.314 3.686 14 O -0.423 6.423 15 N -0.348 5.348 16 C 0.008 3.992 17 C -0.221 4.221 18 C 0.411 3.589 19 F -0.168 7.168 20 F -0.168 7.168 21 F -0.165 7.165 22 C 0.133 3.867 23 H 0.088 0.912 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.136 0.864 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.955 -13.732 1.961 14.730 hybrid contribution 0.020 0.328 0.070 0.336 sum 4.975 -13.404 2.031 14.441 Atomic orbital electron populations 1.70137 1.09399 1.29419 1.35416 1.26907 0.95496 1.04709 0.91116 0.85086 0.78255 0.74809 0.80365 1.17869 1.19997 1.17815 1.21317 0.94887 0.88962 1.54226 0.88972 1.18234 0.86186 0.81657 0.76224 1.90611 1.15510 1.86266 1.57635 1.48418 1.05969 1.04595 1.80745 1.21629 0.83934 0.93015 1.05352 1.20779 0.83781 0.89782 0.74247 1.90727 1.26028 1.73701 1.51857 1.48293 1.06973 1.06640 1.72858 1.21424 1.06153 0.76754 0.94913 1.23278 1.08832 0.88236 1.01789 1.20325 0.73494 0.91874 0.73208 1.93199 1.55594 1.86669 1.81362 1.93193 1.96160 1.91047 1.36432 1.93203 1.48065 1.93941 1.81252 1.21062 0.86149 0.77608 1.01914 0.91219 0.87868 0.87734 0.86440 0.88198 0.86847 0.85453 0.91039 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.53 11.83 21.84 0.26 -46.27 16 2 C 0.03 1.77 5.50 85.30 0.47 2.24 16 3 Si 1.00 38.04 29.56 68.60 2.03 40.06 16 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.28 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.56 -29.04 9.10 24.83 0.23 -28.81 16 8 H 0.09 4.27 7.24 -2.91 -0.02 4.25 16 9 C 0.57 30.26 7.82 86.36 0.67 30.94 16 10 O -0.61 -37.91 15.42 -4.33 -0.07 -37.97 16 11 N -0.66 -26.96 3.36 -841.33 -2.83 -29.79 16 12 C 0.09 2.94 6.28 85.56 0.54 3.48 16 13 C 0.53 16.38 8.13 87.75 0.71 17.10 16 14 O -0.55 -18.98 17.67 -3.03 -0.05 -19.04 16 15 N -0.61 -16.43 2.93 -834.39 -2.44 -18.87 16 16 C 0.13 2.51 5.74 86.38 0.50 3.00 16 17 C -0.18 -3.09 5.58 30.59 0.17 -2.92 16 18 C 0.47 8.26 3.16 71.98 0.23 8.49 16 19 F -0.19 -3.69 16.80 44.97 0.76 -2.94 16 20 F -0.19 -3.64 17.32 44.97 0.78 -2.86 16 21 F -0.18 -3.35 16.80 44.97 0.76 -2.59 16 22 C 0.34 11.11 7.57 170.95 1.29 12.40 16 23 H 0.28 14.40 8.29 -92.71 -0.77 13.63 16 24 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 25 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.12 1.81 7.80 -2.38 -0.02 1.79 16 27 H 0.10 1.98 7.64 -2.39 -0.02 1.96 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -69.29 291.69 5.17 -64.12 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.18 Total: 10.24 kcal Atomic # 6 Polarization: 41.10 SS G_CDS: 4.81 Total: 45.91 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -5.01 Total: -94.93 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -0.12 Total: -57.01 kcal Atomic # 9 Polarization: -10.68 SS G_CDS: 2.29 Total: -8.39 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.06 kcal Total: -69.29 5.17 -64.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298057009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.181 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds