Wall clock time and date at job start Tue Mar 31 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41379 * 126.80535 * 2 1 4 4 C 1.35449 * 103.98950 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.77908 * 180.26147 * 4 3 2 6 6 S 1.81001 * 109.46986 * 89.70999 * 5 4 3 7 7 C 1.76195 * 100.00178 * 180.02562 * 6 5 4 8 8 N 1.32393 * 126.25901 * 0.02635 * 7 6 5 9 9 N 1.28510 * 110.20742 * 179.97438 * 8 7 6 10 10 C 1.33099 * 109.74537 * 0.02562 * 9 8 7 11 11 C 1.39777 * 126.56511 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00045 * 180.02562 * 11 10 9 13 13 C 1.40080 * 120.00202 * 0.02562 * 11 10 9 14 14 N 1.30818 * 119.99860 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00343 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46630 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47201 * 119.99690 * 15 13 11 18 18 H 1.48497 * 109.47109 * 240.00388 * 15 13 11 19 19 N 1.36671 * 126.26176 * 179.71512 * 7 6 5 20 20 C 1.46504 * 127.15066 * 0.03315 * 19 7 6 21 21 O 1.34044 * 106.44438 * 359.97438 * 4 3 2 22 22 N 1.20917 * 111.56675 * 0.02562 * 21 4 3 23 23 H 1.09007 * 109.47094 * 269.99661 * 1 2 3 24 24 H 1.08998 * 109.47290 * 29.99284 * 1 2 3 25 25 H 1.09000 * 109.47160 * 149.99963 * 1 2 3 26 26 H 1.07997 * 128.00412 * 0.02562 * 3 2 1 27 27 H 1.08996 * 109.47062 * 209.71141 * 5 4 3 28 28 H 1.09002 * 109.46910 * 329.71700 * 5 4 3 29 29 H 0.96995 * 120.00187 * 180.02562 * 14 13 11 30 30 H 1.08997 * 109.46681 * 90.02736 * 20 19 7 31 31 H 1.09003 * 109.46618 * 210.02681 * 20 19 7 32 32 H 1.09003 * 109.46721 * 330.02602 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9022 1.3695 0.0064 6 16 5.4145 1.6755 1.7152 7 6 6.9144 2.5556 1.4320 8 7 7.4341 2.8579 0.2525 9 7 8.5340 3.5049 0.4047 10 6 8.7898 3.6581 1.7019 11 6 9.8935 4.3076 2.2619 12 1 9.9961 4.3698 3.3353 13 6 10.8666 4.8778 1.4312 14 7 10.7421 4.8028 0.1311 15 14 12.3420 5.7451 2.1796 16 1 12.2486 5.6917 3.6607 17 1 13.5891 5.0707 1.7382 18 1 12.3613 7.1619 1.7352 19 7 7.7510 3.0563 2.3897 20 6 7.5846 2.9702 3.8427 21 8 3.4537 -0.7254 0.0015 22 7 2.2868 -1.0423 0.0010 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0710 2.1742 0.0004 27 1 5.6683 0.7856 -0.5036 28 1 4.7675 2.3208 -0.5084 29 1 11.4161 5.1973 -0.4442 30 1 8.0652 2.0636 4.2103 31 1 8.0423 3.8405 4.3130 32 1 6.5223 2.9425 4.0856 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323907501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:54 Heat of formation + Delta-G solvation = 125.735178 kcal Electronic energy + Delta-G solvation = -18422.949896 eV Core-core repulsion = 15321.425885 eV Total energy + Delta-G solvation = -3101.524012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.95785 -40.57886 -34.87737 -33.77823 -33.58108 -33.24521 -29.43752 -28.80881 -27.90230 -26.51671 -25.53508 -23.13290 -21.00058 -20.74401 -20.04493 -17.73389 -17.51465 -17.23266 -16.14190 -15.49464 -14.84398 -14.77687 -14.52034 -14.13158 -13.75448 -13.51244 -13.30594 -13.16165 -13.04735 -12.40336 -12.32591 -12.27996 -11.46256 -11.36174 -11.19975 -11.00395 -10.66123 -10.38764 -10.08582 -9.81102 -9.68995 -9.33390 -8.78502 -8.51683 -8.45987 -6.95489 -6.70273 -4.63800 1.05192 1.97383 2.31728 2.64542 2.86525 3.02830 3.04139 3.08464 3.29167 3.83147 4.08851 4.17135 4.30887 4.35740 4.92150 5.04938 5.16644 5.26720 5.26947 5.42882 5.49960 5.55248 5.66477 5.81736 5.84370 6.00345 6.00880 6.68172 6.83396 7.18225 7.41648 7.80988 8.12556 8.19427 8.64564 8.79157 10.22125 10.55445 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.051208 B = 0.003402 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.653296 B = 8227.514441 C = 8509.817475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.013 3.987 3 C -0.215 4.215 4 C -0.006 4.006 5 C -0.021 4.021 6 S -0.027 6.027 7 C 0.039 3.961 8 N -0.284 5.284 9 N -0.332 5.332 10 C 0.348 3.652 11 C -0.445 4.445 12 H 0.085 0.915 13 C 0.078 3.922 14 N -0.735 5.735 15 Si 0.921 3.079 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.514 5.514 20 C 0.101 3.899 21 O 0.105 5.895 22 N -0.365 5.365 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.175 0.825 27 H 0.117 0.883 28 H 0.125 0.875 29 H 0.280 0.720 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 -3.932 3.185 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.146 4.146 3 C -0.239 4.239 4 C -0.071 4.071 5 C -0.170 4.170 6 S 0.200 5.800 7 C -0.333 4.333 8 N -0.130 5.130 9 N -0.179 5.179 10 C 0.104 3.896 11 C -0.486 4.486 12 H 0.103 0.897 13 C -0.148 4.148 14 N -0.359 5.359 15 Si 0.745 3.255 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.217 5.217 20 C -0.044 4.044 21 O 0.038 5.962 22 N -0.070 5.070 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.193 0.807 27 H 0.135 0.865 28 H 0.143 0.857 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.309 -5.433 2.458 14.584 hybrid contribution 1.216 1.586 0.693 2.115 sum -12.093 -3.847 3.152 13.076 Atomic orbital electron populations 1.20150 0.85912 1.03699 1.03355 1.23589 0.99027 0.88849 1.03134 1.22447 0.90789 1.01379 1.09328 1.23697 0.96978 0.83748 1.02636 1.21643 0.93226 1.02723 0.99401 1.84685 1.18937 1.69414 1.06930 1.25235 1.01959 1.16098 0.89997 1.74524 1.06758 1.12587 1.19134 1.75460 1.08262 1.22167 1.12056 1.21634 0.88088 0.92598 0.87262 1.18164 1.02761 1.33150 0.94490 0.89661 1.25811 0.99136 0.95278 0.94571 1.70012 1.31534 1.30623 1.03713 0.86054 0.80177 0.79178 0.80086 1.18512 1.19689 1.19698 1.46011 1.20705 1.49266 1.05677 1.21512 1.01485 1.02459 0.78956 1.84847 1.21471 1.22509 1.67376 1.73846 0.89331 1.24152 1.19666 0.90185 0.89974 0.90650 0.80743 0.86506 0.85685 0.90940 0.92457 0.90258 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.47 36.00 0.38 -0.21 16 2 C 0.01 0.15 7.33 -82.10 -0.60 -0.45 16 3 C -0.22 -2.56 11.06 -39.38 -0.44 -2.99 16 4 C -0.01 -0.08 6.74 -35.30 -0.24 -0.32 16 5 C -0.02 -0.31 5.79 36.01 0.21 -0.11 16 6 S -0.03 -0.48 21.77 -107.50 -2.34 -2.82 16 7 C 0.04 0.90 8.09 -87.27 -0.71 0.19 16 8 N -0.28 -7.51 11.62 30.89 0.36 -7.15 16 9 N -0.33 -9.75 10.48 31.26 0.33 -9.42 16 10 C 0.35 9.52 7.53 -154.80 -1.17 8.36 16 11 C -0.45 -11.55 9.04 -38.32 -0.35 -11.90 16 12 H 0.09 2.00 7.31 -52.48 -0.38 1.62 16 13 C 0.08 1.95 5.50 -17.29 -0.10 1.85 16 14 N -0.74 -19.81 11.94 55.56 0.66 -19.15 16 15 Si 0.92 18.14 29.56 -169.99 -5.03 13.11 16 16 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 N -0.51 -12.12 3.26 -123.17 -0.40 -12.52 16 20 C 0.10 1.79 10.87 59.85 0.65 2.44 16 21 O 0.10 1.57 11.20 17.17 0.19 1.76 16 22 N -0.37 -5.29 12.07 33.42 0.40 -4.88 16 23 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.12 1.84 8.14 -51.92 -0.42 1.41 16 28 H 0.12 1.85 8.14 -51.92 -0.42 1.43 16 29 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 32 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 LS Contribution 303.52 15.07 4.57 4.57 Total: -1.00 -32.55 303.52 -6.88 -39.42 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -3.28 Total: 0.20 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.35 Total: -3.13 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 1.35 Total: -53.12 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.19 Total: 1.76 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.34 Total: -2.82 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.55 -6.88 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323907501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.159 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds