Wall clock time and date at job start Tue Mar 31 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41379 * 126.80535 * 2 1 4 4 C 1.35449 * 103.98950 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.77908 * 180.26147 * 4 3 2 6 6 S 1.81001 * 109.46986 * 89.70999 * 5 4 3 7 7 C 1.76195 * 100.00178 * 180.02562 * 6 5 4 8 8 N 1.32393 * 126.25901 * 0.02635 * 7 6 5 9 9 N 1.28510 * 110.20742 * 179.97438 * 8 7 6 10 10 C 1.33099 * 109.74537 * 0.02562 * 9 8 7 11 11 C 1.39777 * 126.56511 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00045 * 180.02562 * 11 10 9 13 13 C 1.40080 * 120.00202 * 0.02562 * 11 10 9 14 14 N 1.30818 * 119.99860 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00343 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46630 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47201 * 119.99690 * 15 13 11 18 18 H 1.48497 * 109.47109 * 240.00388 * 15 13 11 19 19 N 1.36671 * 126.26176 * 179.71512 * 7 6 5 20 20 C 1.46504 * 127.15066 * 0.03315 * 19 7 6 21 21 O 1.34044 * 106.44438 * 359.97438 * 4 3 2 22 22 N 1.20917 * 111.56675 * 0.02562 * 21 4 3 23 23 H 1.09007 * 109.47094 * 269.99661 * 1 2 3 24 24 H 1.08998 * 109.47290 * 29.99284 * 1 2 3 25 25 H 1.09000 * 109.47160 * 149.99963 * 1 2 3 26 26 H 1.07997 * 128.00412 * 0.02562 * 3 2 1 27 27 H 1.08996 * 109.47062 * 209.71141 * 5 4 3 28 28 H 1.09002 * 109.46910 * 329.71700 * 5 4 3 29 29 H 0.96995 * 120.00187 * 180.02562 * 14 13 11 30 30 H 1.08997 * 109.46681 * 90.02736 * 20 19 7 31 31 H 1.09003 * 109.46618 * 210.02681 * 20 19 7 32 32 H 1.09003 * 109.46721 * 330.02602 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9022 1.3695 0.0064 6 16 5.4145 1.6755 1.7152 7 6 6.9144 2.5556 1.4320 8 7 7.4341 2.8579 0.2525 9 7 8.5340 3.5049 0.4047 10 6 8.7898 3.6581 1.7019 11 6 9.8935 4.3076 2.2619 12 1 9.9961 4.3698 3.3353 13 6 10.8666 4.8778 1.4312 14 7 10.7421 4.8028 0.1311 15 14 12.3420 5.7451 2.1796 16 1 12.2486 5.6917 3.6607 17 1 13.5891 5.0707 1.7382 18 1 12.3613 7.1619 1.7352 19 7 7.7510 3.0563 2.3897 20 6 7.5846 2.9702 3.8427 21 8 3.4537 -0.7254 0.0015 22 7 2.2868 -1.0423 0.0010 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 2.0710 2.1742 0.0004 27 1 5.6683 0.7856 -0.5036 28 1 4.7675 2.3208 -0.5084 29 1 11.4161 5.1973 -0.4442 30 1 8.0652 2.0636 4.2103 31 1 8.0423 3.8405 4.3130 32 1 6.5223 2.9425 4.0856 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323907501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:54 Heat of formation + Delta-G solvation = 106.072663 kcal Electronic energy + Delta-G solvation = -18423.802527 eV Core-core repulsion = 15321.425885 eV Total energy + Delta-G solvation = -3102.376642 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.97762 -42.46472 -35.81786 -35.62770 -35.20063 -34.51508 -31.34156 -29.57840 -29.11993 -28.14928 -27.35566 -24.12942 -22.81717 -22.50748 -21.17156 -19.28109 -18.80311 -18.46898 -17.63455 -17.21011 -16.58927 -16.22192 -15.74754 -15.40169 -15.25622 -14.87191 -14.15903 -14.10362 -13.95187 -13.83883 -13.81022 -13.34675 -13.13083 -12.96336 -12.77407 -12.17262 -12.15280 -11.92839 -11.71152 -11.46722 -11.00476 -10.59553 -10.51640 -10.31392 -10.29079 -8.60059 -8.54434 -6.58880 -0.17503 0.71305 1.07800 1.18468 1.35663 1.43418 1.60917 1.60990 1.94849 2.19132 2.44288 2.50222 3.23536 3.29789 3.34205 3.88575 4.00223 4.08513 4.23815 4.45919 4.52902 4.54306 4.63085 4.72826 4.86022 4.88703 4.90407 4.95957 5.25760 5.32149 5.55756 6.02351 6.22438 6.76019 6.91433 7.17036 8.41096 8.62795 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.051208 B = 0.003402 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.653296 B = 8227.514441 C = 8509.817475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.018 3.982 3 C -0.200 4.200 4 C -0.021 4.021 5 C -0.016 4.016 6 S 0.018 5.982 7 C 0.050 3.950 8 N -0.325 5.325 9 N -0.387 5.387 10 C 0.319 3.681 11 C -0.470 4.470 12 H 0.104 0.896 13 C 0.029 3.971 14 N -0.786 5.786 15 Si 1.006 2.994 16 H -0.245 1.245 17 H -0.269 1.269 18 H -0.267 1.267 19 N -0.521 5.521 20 C 0.092 3.908 21 O 0.081 5.919 22 N -0.390 5.390 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.079 0.921 26 H 0.203 0.797 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.285 0.715 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 -3.587 4.964 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.141 4.141 3 C -0.224 4.224 4 C -0.086 4.086 5 C -0.165 4.165 6 S 0.245 5.755 7 C -0.323 4.323 8 N -0.170 5.170 9 N -0.234 5.234 10 C 0.073 3.927 11 C -0.510 4.510 12 H 0.122 0.878 13 C -0.192 4.192 14 N -0.411 5.411 15 Si 0.825 3.175 16 H -0.168 1.168 17 H -0.193 1.193 18 H -0.192 1.192 19 N -0.222 5.222 20 C -0.050 4.050 21 O 0.017 5.983 22 N -0.098 5.098 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.097 0.903 26 H 0.220 0.780 27 H 0.124 0.876 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.799 -5.095 4.254 16.219 hybrid contribution 1.406 1.348 0.153 1.954 sum -13.393 -3.747 4.407 14.588 Atomic orbital electron populations 1.20370 0.82958 1.05137 1.04727 1.24290 1.00806 0.88071 1.00948 1.22870 0.89773 1.02699 1.07051 1.23520 0.96846 0.83742 1.04496 1.21584 0.93881 1.03084 0.97922 1.84502 1.14923 1.67550 1.08524 1.26293 1.03025 1.13610 0.89395 1.74399 1.07134 1.14545 1.20920 1.75320 1.09943 1.24154 1.13968 1.22036 0.89550 0.93683 0.87449 1.18663 1.03053 1.33675 0.95594 0.87840 1.26976 1.02122 0.95387 0.94711 1.70152 1.33141 1.32182 1.05673 0.84807 0.75374 0.77552 0.79753 1.16829 1.19349 1.19192 1.46357 1.19762 1.48352 1.07764 1.21870 1.03552 1.03788 0.75829 1.84824 1.22024 1.22961 1.68441 1.73860 0.89445 1.25397 1.21120 0.88691 0.87549 0.90258 0.78010 0.87582 0.85295 0.90500 0.90848 0.89177 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.47 71.23 0.75 -0.19 16 2 C 0.02 0.38 7.33 43.58 0.32 0.70 16 3 C -0.20 -4.24 11.06 22.40 0.25 -3.99 16 4 C -0.02 -0.56 6.74 25.04 0.17 -0.39 16 5 C -0.02 -0.46 5.79 71.24 0.41 -0.05 16 6 S 0.02 0.59 21.77 -56.49 -1.23 -0.64 16 7 C 0.05 2.34 8.09 179.18 1.45 3.79 16 8 N -0.33 -17.79 11.62 -56.17 -0.65 -18.44 16 9 N -0.39 -23.71 10.48 -55.01 -0.58 -24.28 16 10 C 0.32 17.87 7.53 133.23 1.00 18.88 16 11 C -0.47 -24.65 9.04 23.09 0.21 -24.44 16 12 H 0.10 4.81 7.31 -2.91 -0.02 4.78 16 13 C 0.03 1.47 5.50 85.29 0.47 1.94 16 14 N -0.79 -43.93 11.94 21.85 0.26 -43.67 16 15 Si 1.01 37.08 29.56 68.60 2.03 39.11 16 16 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 17 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 19 N -0.52 -24.50 3.26 -543.60 -1.77 -26.27 16 20 C 0.09 3.12 10.87 127.77 1.39 4.51 16 21 O 0.08 2.38 11.20 71.60 0.80 3.18 16 22 N -0.39 -10.82 12.07 -49.55 -0.60 -11.42 16 23 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 27 H 0.11 3.41 8.14 -2.40 -0.02 3.39 16 28 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 29 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.09 2.84 7.54 -2.39 -0.02 2.82 16 32 H 0.09 2.60 7.85 -2.39 -0.02 2.58 16 Total: -1.00 -74.08 303.52 5.83 -68.25 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.15 Total: 13.43 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 6.41 Total: 0.74 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -3.34 Total: -124.07 kcal Atomic # 8 Polarization: 2.38 SS G_CDS: 0.80 Total: 3.18 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.23 Total: -0.64 kcal Total: -74.08 5.83 -68.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323907501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.323 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds