Wall clock time and date at job start Tue Mar 31 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34329 * 126.44102 * 2 1 4 4 N 1.34473 * 107.66595 * 179.76808 * 3 2 1 5 5 C 1.30253 * 108.70390 * 0.42272 * 4 3 2 6 6 C 1.50700 * 125.62317 * 179.84051 * 5 4 3 7 7 S 1.81001 * 109.47428 * 89.69189 * 6 5 4 8 8 C 1.76196 * 100.00091 * 180.02562 * 7 6 5 9 9 N 1.32387 * 126.26075 * 0.02562 * 8 7 6 10 10 N 1.28514 * 110.20378 * 179.97438 * 9 8 7 11 11 C 1.33095 * 109.74899 * 0.02562 * 10 9 8 12 12 C 1.39771 * 126.56547 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00111 * 188.22178 * 12 11 10 14 14 C 1.40084 * 120.00218 * 8.21795 * 12 11 10 15 15 N 1.30817 * 119.99946 * 191.23483 * 14 12 11 16 16 Si 1.86798 * 119.99751 * 11.23165 * 14 12 11 17 17 H 1.48506 * 109.46877 * 270.00124 * 16 14 12 18 18 H 1.48499 * 109.47207 * 29.99996 * 16 14 12 19 19 H 1.48496 * 109.47289 * 150.00071 * 16 14 12 20 20 N 1.36673 * 126.26020 * 180.29951 * 8 7 6 21 21 C 1.46501 * 127.15030 * 0.02603 * 20 8 7 22 22 O 1.33972 * 108.75946 * 359.57724 * 5 4 3 23 23 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47109 * 299.99583 * 1 2 3 25 25 H 1.08996 * 109.47405 * 60.00117 * 1 2 3 26 26 H 1.07999 * 126.16158 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.46865 * 329.69195 * 6 5 4 28 28 H 1.08999 * 109.47432 * 209.69908 * 6 5 4 29 29 H 0.96998 * 119.99838 * 354.77302 * 15 14 12 30 30 H 1.09002 * 109.47190 * 270.18231 * 21 20 8 31 31 H 1.09008 * 109.47074 * 30.18353 * 21 20 8 32 32 H 1.08997 * 109.46970 * 150.18023 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8005 -1.5339 -0.0013 7 16 5.2910 -1.8864 1.7049 8 6 6.7029 -2.8997 1.4143 9 7 7.1876 -3.2468 0.2323 10 7 8.2250 -3.9909 0.3791 11 6 8.4711 -4.1688 1.6750 12 6 9.5137 -4.9164 2.2296 13 1 9.5395 -5.1007 3.2935 14 6 10.5251 -5.4268 1.4057 15 7 11.3741 -6.3026 1.8783 16 14 10.6612 -4.8569 -0.3680 17 1 9.8478 -5.7449 -1.2371 18 1 10.1622 -3.4628 -0.4797 19 1 12.0817 -4.9101 -0.7974 20 7 7.4948 -3.4754 2.3679 21 6 7.3431 -3.3764 3.8217 22 8 2.3075 -1.0840 -0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 1.9820 2.1112 0.0004 27 1 5.6146 -1.0230 -0.5153 28 1 4.5762 -2.4686 -0.5154 29 1 11.3514 -6.5419 2.8181 30 1 7.9025 -2.5154 4.1876 31 1 6.2883 -3.2565 4.0696 32 1 7.7254 -4.2837 4.2894 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325013244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:36 Heat of formation + Delta-G solvation = 81.022848 kcal Electronic energy + Delta-G solvation = -18515.831466 eV Core-core repulsion = 15412.368582 eV Total energy + Delta-G solvation = -3103.462884 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.48407 -40.97730 -34.90561 -33.98313 -33.65614 -33.28488 -30.49089 -29.93470 -26.80834 -25.91298 -25.20005 -22.49647 -21.55177 -21.23078 -20.22750 -18.24142 -17.41252 -17.07817 -16.42518 -15.35483 -15.14983 -14.80154 -14.52520 -14.19608 -13.76506 -13.47695 -13.37711 -13.22122 -13.10625 -12.68865 -12.63845 -12.54724 -11.99679 -11.46961 -11.16031 -10.93928 -10.65342 -10.59503 -9.98826 -9.67504 -9.42377 -9.09989 -8.79863 -8.71316 -8.44130 -7.47307 -7.17027 -4.87111 0.92965 1.76090 2.34865 2.47299 2.74925 2.85042 3.50850 3.57553 3.83213 3.85828 3.99834 4.06497 4.35599 4.53062 4.78651 4.83742 5.06354 5.06668 5.21883 5.26072 5.34556 5.49993 5.70241 5.73334 5.85659 5.88435 6.11024 6.32255 6.60645 7.08032 7.36623 7.47814 7.57622 8.01124 8.31410 8.52017 9.92161 10.05937 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.039180 B = 0.003842 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.486617 B = 7285.846733 C = 7715.880367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.047 4.047 3 C -0.043 4.043 4 N -0.463 5.463 5 C 0.205 3.795 6 C -0.006 4.006 7 S -0.008 6.008 8 C 0.058 3.942 9 N -0.269 5.269 10 N -0.408 5.408 11 C 0.346 3.654 12 C -0.492 4.492 13 H 0.084 0.916 14 C 0.066 3.934 15 N -0.805 5.805 16 Si 1.104 2.896 17 H -0.276 1.276 18 H -0.254 1.254 19 H -0.310 1.310 20 N -0.510 5.510 21 C 0.101 3.899 22 O -0.193 6.193 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.185 0.815 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.284 0.716 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 10.350 0.585 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.182 4.182 4 N -0.192 5.192 5 C -0.002 4.002 6 C -0.155 4.155 7 S 0.218 5.782 8 C -0.316 4.316 9 N -0.113 5.113 10 N -0.258 5.258 11 C 0.103 3.897 12 C -0.533 4.533 13 H 0.102 0.898 14 C -0.157 4.157 15 N -0.429 5.429 16 Si 0.931 3.069 17 H -0.202 1.202 18 H -0.180 1.180 19 H -0.240 1.240 20 N -0.212 5.212 21 C -0.044 4.044 22 O -0.080 6.080 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.202 0.798 27 H 0.153 0.847 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.316 10.614 -1.213 19.503 hybrid contribution -0.989 -0.617 2.131 2.428 sum -17.305 9.998 0.918 20.006 Atomic orbital electron populations 1.20283 0.83877 1.04460 1.03847 1.23534 0.95133 0.84629 1.06826 1.23109 0.87679 1.00451 1.07011 1.70479 1.23049 1.08757 1.16964 1.25142 0.83527 0.89759 1.01733 1.21533 0.92533 1.01530 0.99915 1.84839 1.26982 1.59961 1.06438 1.25301 1.04269 1.12575 0.89439 1.74254 1.06530 1.11497 1.19040 1.74221 1.13950 1.24955 1.12692 1.21661 0.89350 0.91436 0.87267 1.19382 1.05688 1.30945 0.97302 0.89841 1.27325 0.90096 0.89993 1.08296 1.70657 1.33753 1.20829 1.17678 0.82920 0.72912 0.80033 0.71008 1.20228 1.17960 1.23955 1.45825 1.25890 1.43419 1.06032 1.21558 1.01705 1.02877 0.78216 1.84423 1.17576 1.36492 1.69525 0.90275 0.89254 0.89284 0.79787 0.84740 0.86053 0.90454 0.91985 0.91235 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.43 36.01 0.38 -0.02 16 2 C -0.05 -0.50 7.39 -35.69 -0.26 -0.77 16 3 C -0.04 -0.50 11.80 -17.77 -0.21 -0.70 16 4 N -0.46 -6.92 11.29 -11.10 -0.13 -7.04 16 5 C 0.21 3.05 7.60 -12.95 -0.10 2.95 16 6 C -0.01 -0.10 5.85 36.01 0.21 0.11 16 7 S -0.01 -0.14 21.77 -107.50 -2.34 -2.48 16 8 C 0.06 1.29 8.09 -87.28 -0.71 0.59 16 9 N -0.27 -6.77 11.62 30.89 0.36 -6.41 16 10 N -0.41 -11.20 7.50 31.26 0.23 -10.96 16 11 C 0.35 9.13 7.21 -154.82 -1.12 8.01 16 12 C -0.49 -13.08 9.47 -38.32 -0.36 -13.44 16 13 H 0.08 2.15 7.46 -52.48 -0.39 1.76 16 14 C 0.07 1.77 5.52 -17.29 -0.10 1.67 16 15 N -0.81 -21.48 13.65 55.56 0.76 -20.72 16 16 Si 1.10 27.39 26.40 -169.99 -4.49 22.90 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.25 -6.57 6.25 56.52 0.35 -6.22 16 19 H -0.31 -7.37 7.11 56.52 0.40 -6.97 16 20 N -0.51 -11.74 3.26 -123.18 -0.40 -12.14 16 21 C 0.10 1.77 10.89 59.85 0.65 2.43 16 22 O -0.19 -2.66 10.78 5.36 0.06 -2.60 16 23 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.19 1.47 8.06 -52.49 -0.42 1.04 16 27 H 0.13 2.14 8.14 -51.92 -0.42 1.72 16 28 H 0.12 1.83 8.14 -51.92 -0.42 1.41 16 29 H 0.28 7.19 8.73 -40.82 -0.36 6.84 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.06 7.85 -51.92 -0.41 0.65 16 32 H 0.08 1.36 7.47 -51.93 -0.39 0.97 16 LS Contribution 299.40 15.07 4.51 4.51 Total: -1.00 -32.55 299.40 -6.39 -38.94 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -3.35 Total: -4.82 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.61 Total: 0.83 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.83 Total: -57.27 kcal Atomic # 8 Polarization: -2.66 SS G_CDS: 0.06 Total: -2.60 kcal Atomic # 14 Polarization: 27.39 SS G_CDS: -4.49 Total: 22.90 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -2.34 Total: -2.48 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.55 -6.39 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325013244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.965 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds