Wall clock time and date at job start Tue Mar 31 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34329 * 126.44102 * 2 1 4 4 N 1.34473 * 107.66595 * 179.76808 * 3 2 1 5 5 C 1.30253 * 108.70390 * 0.42272 * 4 3 2 6 6 C 1.50700 * 125.62317 * 179.84051 * 5 4 3 7 7 S 1.81001 * 109.47428 * 89.69189 * 6 5 4 8 8 C 1.76196 * 100.00091 * 180.02562 * 7 6 5 9 9 N 1.32387 * 126.26075 * 0.02562 * 8 7 6 10 10 N 1.28514 * 110.20378 * 179.97438 * 9 8 7 11 11 C 1.33095 * 109.74899 * 0.02562 * 10 9 8 12 12 C 1.39771 * 126.56547 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00111 * 188.22178 * 12 11 10 14 14 C 1.40084 * 120.00218 * 8.21795 * 12 11 10 15 15 N 1.30817 * 119.99946 * 191.23483 * 14 12 11 16 16 Si 1.86798 * 119.99751 * 11.23165 * 14 12 11 17 17 H 1.48506 * 109.46877 * 270.00124 * 16 14 12 18 18 H 1.48499 * 109.47207 * 29.99996 * 16 14 12 19 19 H 1.48496 * 109.47289 * 150.00071 * 16 14 12 20 20 N 1.36673 * 126.26020 * 180.29951 * 8 7 6 21 21 C 1.46501 * 127.15030 * 0.02603 * 20 8 7 22 22 O 1.33972 * 108.75946 * 359.57724 * 5 4 3 23 23 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47109 * 299.99583 * 1 2 3 25 25 H 1.08996 * 109.47405 * 60.00117 * 1 2 3 26 26 H 1.07999 * 126.16158 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.46865 * 329.69195 * 6 5 4 28 28 H 1.08999 * 109.47432 * 209.69908 * 6 5 4 29 29 H 0.96998 * 119.99838 * 354.77302 * 15 14 12 30 30 H 1.09002 * 109.47190 * 270.18231 * 21 20 8 31 31 H 1.09008 * 109.47074 * 30.18353 * 21 20 8 32 32 H 1.08997 * 109.46970 * 150.18023 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8005 -1.5339 -0.0013 7 16 5.2910 -1.8864 1.7049 8 6 6.7029 -2.8997 1.4143 9 7 7.1876 -3.2468 0.2323 10 7 8.2250 -3.9909 0.3791 11 6 8.4711 -4.1688 1.6750 12 6 9.5137 -4.9164 2.2296 13 1 9.5395 -5.1007 3.2935 14 6 10.5251 -5.4268 1.4057 15 7 11.3741 -6.3026 1.8783 16 14 10.6612 -4.8569 -0.3680 17 1 9.8478 -5.7449 -1.2371 18 1 10.1622 -3.4628 -0.4797 19 1 12.0817 -4.9101 -0.7974 20 7 7.4948 -3.4754 2.3679 21 6 7.3431 -3.3764 3.8217 22 8 2.3075 -1.0840 -0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8899 26 1 1.9820 2.1112 0.0004 27 1 5.6146 -1.0230 -0.5153 28 1 4.5762 -2.4686 -0.5154 29 1 11.3514 -6.5419 2.8181 30 1 7.9025 -2.5154 4.1876 31 1 6.2883 -3.2565 4.0696 32 1 7.7254 -4.2837 4.2894 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325013244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:36 Heat of formation + Delta-G solvation = 58.767496 kcal Electronic energy + Delta-G solvation = -18516.796530 eV Core-core repulsion = 15412.368582 eV Total energy + Delta-G solvation = -3104.427948 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.46412 -42.86334 -35.95086 -35.91663 -35.42855 -34.19353 -32.06225 -31.24292 -28.45158 -27.34240 -26.49847 -23.52870 -23.31451 -22.41936 -21.95239 -20.19695 -18.75154 -18.11105 -17.72395 -17.05191 -16.87912 -15.93295 -15.75143 -15.66432 -15.46734 -14.92064 -14.64482 -14.36211 -14.14627 -14.09741 -13.80902 -13.55484 -13.23636 -13.08704 -12.88157 -12.53358 -12.09803 -11.88891 -11.65458 -11.59417 -11.38911 -10.91679 -10.57400 -10.37739 -9.69364 -9.49220 -8.79087 -6.85798 -0.28999 0.54386 0.93303 0.96563 1.49666 1.51903 1.61831 1.70825 1.96464 2.08031 2.19968 2.40253 2.83203 3.04210 3.67225 3.92158 3.94447 4.01608 4.26511 4.33150 4.39370 4.45934 4.54755 4.59296 4.69237 4.71702 5.00417 5.13220 5.22265 5.26200 5.37619 5.66454 6.00515 6.39210 6.56591 6.59181 7.92189 8.13220 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.039180 B = 0.003842 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.486617 B = 7285.846733 C = 7715.880367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.033 4.033 3 C -0.060 4.060 4 N -0.482 5.482 5 C 0.179 3.821 6 C -0.002 4.002 7 S 0.034 5.966 8 C 0.074 3.926 9 N -0.305 5.305 10 N -0.439 5.439 11 C 0.327 3.673 12 C -0.509 4.509 13 H 0.084 0.916 14 C 0.044 3.956 15 N -0.822 5.822 16 Si 1.136 2.864 17 H -0.285 1.285 18 H -0.273 1.273 19 H -0.295 1.295 20 N -0.513 5.513 21 C 0.092 3.908 22 O -0.206 6.206 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.217 0.783 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.287 0.713 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.057 11.988 1.166 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.087 4.087 3 C -0.199 4.199 4 N -0.213 5.213 5 C -0.027 4.027 6 C -0.151 4.151 7 S 0.260 5.740 8 C -0.301 4.301 9 N -0.149 5.149 10 N -0.288 5.288 11 C 0.080 3.920 12 C -0.550 4.550 13 H 0.102 0.898 14 C -0.177 4.177 15 N -0.447 5.447 16 Si 0.963 3.037 17 H -0.212 1.212 18 H -0.200 1.200 19 H -0.224 1.224 20 N -0.213 5.213 21 C -0.051 4.051 22 O -0.093 6.093 23 H 0.101 0.899 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.234 0.766 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.020 12.236 -0.612 22.624 hybrid contribution -0.494 -0.901 1.984 2.235 sum -19.513 11.335 1.372 22.608 Atomic orbital electron populations 1.20593 0.80222 1.05465 1.06112 1.24539 0.96893 0.83580 1.03706 1.23694 0.86490 1.02267 1.07459 1.70432 1.25245 1.08884 1.16753 1.24726 0.83690 0.89669 1.04604 1.21445 0.93165 1.01891 0.98584 1.84719 1.23565 1.57807 1.07888 1.26294 1.04513 1.10543 0.88772 1.74190 1.07064 1.13121 1.20478 1.74106 1.15082 1.25872 1.13703 1.21733 0.90353 0.92316 0.87598 1.19382 1.06222 1.32031 0.97341 0.89788 1.27762 0.90265 0.90109 1.09536 1.70652 1.34437 1.21631 1.18012 0.82445 0.73168 0.78407 0.69679 1.21165 1.19977 1.22418 1.46185 1.24807 1.42208 1.08102 1.21928 1.03966 1.03991 0.75187 1.84423 1.17454 1.37805 1.69581 0.89922 0.86879 0.86835 0.76615 0.85443 0.85911 0.90205 0.90201 0.88431 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.43 71.24 0.74 0.22 16 2 C -0.03 -0.61 7.39 24.79 0.18 -0.43 16 3 C -0.06 -1.21 11.80 83.39 0.98 -0.23 16 4 N -0.48 -13.65 11.29 -303.83 -3.43 -17.09 16 5 C 0.18 5.11 7.60 88.34 0.67 5.78 16 6 C 0.00 -0.06 5.85 71.24 0.42 0.36 16 7 S 0.03 1.14 21.77 -56.49 -1.23 -0.09 16 8 C 0.07 3.24 8.09 179.18 1.45 4.69 16 9 N -0.31 -15.48 11.62 -56.18 -0.65 -16.13 16 10 N -0.44 -24.43 7.50 -55.02 -0.41 -24.84 16 11 C 0.33 17.36 7.21 133.23 0.96 18.33 16 12 C -0.51 -27.34 9.47 23.09 0.22 -27.12 16 13 H 0.08 4.37 7.46 -2.91 -0.02 4.35 16 14 C 0.04 2.37 5.52 85.29 0.47 2.84 16 15 N -0.82 -44.20 13.65 21.86 0.30 -43.90 16 16 Si 1.14 56.87 26.40 68.60 1.81 58.69 16 17 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 18 H -0.27 -14.45 6.25 99.48 0.62 -13.82 16 19 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 20 N -0.51 -23.15 3.26 -543.62 -1.77 -24.92 16 21 C 0.09 3.03 10.89 127.77 1.39 4.43 16 22 O -0.21 -5.29 10.78 -3.75 -0.04 -5.33 16 23 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.22 2.67 8.06 -2.91 -0.02 2.64 16 27 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 28 H 0.12 3.68 8.14 -2.40 -0.02 3.66 16 29 H 0.29 14.67 8.73 -92.71 -0.81 13.86 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.10 2.67 7.85 -2.38 -0.02 2.65 16 32 H 0.08 2.75 7.47 -2.39 -0.02 2.74 16 Total: -1.00 -70.86 299.40 3.09 -67.77 By element: Atomic # 1 Polarization: -4.04 SS G_CDS: 1.03 Total: -3.01 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 7.49 Total: 8.87 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.97 Total: -126.89 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.04 Total: -5.33 kcal Atomic # 14 Polarization: 56.87 SS G_CDS: 1.81 Total: 58.69 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -1.23 Total: -0.09 kcal Total: -70.86 3.09 -67.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325013244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.537 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds