Wall clock time and date at job start Tue Mar 31 2020 01:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99989 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47314 * 54.99967 * 11 10 9 13 13 N 1.46901 * 109.47113 * 294.99658 * 11 10 9 14 14 C 1.50698 * 109.46914 * 174.99639 * 11 10 9 15 15 N 1.30934 * 126.40796 * 254.71455 * 14 11 10 16 16 C 1.35379 * 105.57653 * 179.91894 * 15 14 11 17 17 C 1.47783 * 126.44475 * 180.09100 * 16 15 14 18 18 C 1.35093 * 126.10988 * 180.27809 * 17 16 15 19 19 N 1.31337 * 114.24505 * 179.97438 * 18 17 16 20 20 C 1.29193 * 117.29451 * 0.02562 * 19 18 17 21 21 S 1.70958 * 110.35359 * 359.74193 * 20 19 18 22 22 N 1.31008 * 107.10737 * 0.34453 * 16 15 14 23 23 O 1.21280 * 110.05117 * 359.78148 * 22 16 15 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 27 27 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 29 29 H 1.00893 * 110.99780 * 176.04845 * 13 11 10 30 30 H 1.00906 * 110.99754 * 300.00169 * 13 11 10 31 31 H 1.08003 * 122.87795 * 359.97438 * 18 17 16 32 32 H 1.07999 * 124.82250 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8432 13 7 0.7281 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1251 15 7 2.6701 -6.8552 -1.1937 16 6 3.6210 -7.7512 -0.8393 17 6 4.2092 -8.7955 -1.7039 18 6 5.1544 -9.6899 -1.3415 19 7 5.5101 -10.5163 -2.2983 20 6 4.9299 -10.3804 -3.4446 21 16 3.7978 -9.1005 -3.3899 22 7 3.9177 -7.5221 0.4160 23 8 3.2572 -6.5962 0.8371 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.1637 -5.9553 1.2510 30 1 1.3477 -5.1034 2.0500 31 1 5.5811 -9.7227 -0.3499 32 1 5.1283 -10.9916 -4.3126 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325934102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:33 Heat of formation + Delta-G solvation = 106.941092 kcal Electronic energy + Delta-G solvation = -18382.889228 eV Core-core repulsion = 15280.550244 eV Total energy + Delta-G solvation = -3102.338984 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.62896 -40.00049 -36.84498 -35.95095 -33.22817 -32.33998 -30.39575 -30.21045 -26.66966 -26.38663 -24.30525 -23.85372 -22.20977 -20.51740 -19.86658 -18.90661 -18.13018 -17.31199 -16.39681 -16.14981 -16.01889 -14.99214 -14.87428 -14.38960 -14.33593 -14.28679 -14.07760 -12.75660 -12.52893 -12.27475 -12.08940 -11.96301 -11.79630 -11.22050 -10.96091 -10.92506 -10.63284 -10.44452 -10.12807 -9.90342 -9.61776 -9.48096 -9.18188 -9.05684 -8.90254 -8.31228 -5.98013 -4.00376 -0.09994 0.78977 1.12282 1.30456 2.01698 2.63131 2.71751 3.23344 3.33171 3.39774 3.42849 3.88886 3.95146 4.47163 4.61593 4.74253 4.81463 5.03986 5.32201 5.38336 5.43806 5.63555 5.68347 5.80748 6.33530 6.50435 6.94437 7.08582 7.20748 7.43756 7.70818 7.88037 7.98004 8.05343 8.42168 9.06807 9.63196 11.12886 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.030064 B = 0.003206 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.108943 B = 8731.579965 C = 9045.498381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.032 3.968 10 C -0.102 4.102 11 C 0.184 3.816 12 H 0.127 0.873 13 N -0.811 5.811 14 C 0.173 3.827 15 N -0.479 5.479 16 C 0.236 3.764 17 C -0.168 4.168 18 C 0.081 3.919 19 N -0.471 5.471 20 C 0.010 3.990 21 S 0.220 5.780 22 N -0.371 5.371 23 O 0.083 5.917 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.038 0.962 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.341 0.659 30 H 0.350 0.650 31 H 0.183 0.817 32 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -19.922 -4.448 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.069 3.931 12 H 0.145 0.855 13 N -0.340 5.340 14 C -0.051 4.051 15 N -0.212 5.212 16 C -0.035 4.035 17 C -0.291 4.291 18 C -0.077 4.077 19 N -0.184 5.184 20 C -0.286 4.286 21 S 0.473 5.527 22 N -0.079 5.079 23 O 0.023 5.977 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.164 0.836 31 H 0.200 0.800 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.423 -19.717 -5.335 21.134 hybrid contribution 1.421 0.074 0.942 1.706 sum 6.844 -19.643 -4.393 21.260 Atomic orbital electron populations 1.69963 1.05945 1.26539 1.50642 1.24977 0.94815 0.99086 0.95367 0.86637 0.79873 0.83680 0.78055 1.20744 1.21232 1.19949 1.21236 0.92944 0.91164 1.50887 0.92896 1.19020 0.93446 0.89547 0.98499 1.21868 0.99331 0.91567 1.01366 1.20959 0.89306 0.87211 0.95600 0.85511 1.58810 1.26998 1.45086 1.03081 1.31261 0.93852 0.97990 0.81952 1.72116 1.15707 1.06704 1.26655 1.22433 0.95308 0.96510 0.89280 1.22834 1.06161 1.02232 0.97896 1.22110 0.94928 0.90522 1.00179 1.66321 1.26608 1.25587 0.99854 1.28765 0.98157 1.01617 1.00068 1.84296 1.36784 1.27371 1.04200 1.74972 1.15548 1.04967 1.12377 1.85259 1.39135 1.34455 1.38900 0.93020 0.96530 0.94403 0.92272 0.92245 0.84611 0.83566 0.79968 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 10 C -0.10 -1.93 4.78 -26.73 -0.13 -2.06 16 11 C 0.18 2.78 3.29 -68.86 -0.23 2.56 16 12 H 0.13 1.92 8.14 -51.93 -0.42 1.49 16 13 N -0.81 -10.94 8.68 -5.65 -0.05 -10.99 16 14 C 0.17 2.56 7.28 -12.98 -0.09 2.46 16 15 N -0.48 -7.42 11.58 -9.89 -0.11 -7.53 16 16 C 0.24 3.50 8.05 -156.06 -1.26 2.25 16 17 C -0.17 -2.11 6.52 -36.80 -0.24 -2.35 16 18 C 0.08 0.93 11.28 -18.88 -0.21 0.72 16 19 N -0.47 -5.11 10.52 -15.48 -0.16 -5.27 16 20 C 0.01 0.08 12.22 51.65 0.63 0.71 16 21 S 0.22 2.08 23.21 -107.50 -2.50 -0.42 16 22 N -0.37 -5.60 12.18 30.98 0.38 -5.23 16 23 O 0.08 1.22 11.27 17.99 0.20 1.42 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.34 3.73 9.06 -39.30 -0.36 3.37 16 30 H 0.35 4.34 8.97 -39.29 -0.35 3.99 16 31 H 0.18 1.91 8.06 -52.48 -0.42 1.49 16 32 H 0.21 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -31.74 304.97 -7.19 -38.94 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -3.19 Total: 1.84 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.07 Total: -8.20 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.79 Total: -54.52 kcal Atomic # 8 Polarization: 1.22 SS G_CDS: 0.20 Total: 1.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.50 Total: -0.42 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.74 -7.19 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325934102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.879 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds