Wall clock time and date at job start Tue Mar 31 2020 01:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99989 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47314 * 54.99967 * 11 10 9 13 13 N 1.46901 * 109.47113 * 294.99658 * 11 10 9 14 14 C 1.50698 * 109.46914 * 174.99639 * 11 10 9 15 15 N 1.30934 * 126.40796 * 254.71455 * 14 11 10 16 16 C 1.35379 * 105.57653 * 179.91894 * 15 14 11 17 17 C 1.47783 * 126.44475 * 180.09100 * 16 15 14 18 18 C 1.35093 * 126.10988 * 180.27809 * 17 16 15 19 19 N 1.31337 * 114.24505 * 179.97438 * 18 17 16 20 20 C 1.29193 * 117.29451 * 0.02562 * 19 18 17 21 21 S 1.70958 * 110.35359 * 359.74193 * 20 19 18 22 22 N 1.31008 * 107.10737 * 0.34453 * 16 15 14 23 23 O 1.21280 * 110.05117 * 359.78148 * 22 16 15 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 26 26 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 27 27 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 28 28 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 29 29 H 1.00893 * 110.99780 * 176.04845 * 13 11 10 30 30 H 1.00906 * 110.99754 * 300.00169 * 13 11 10 31 31 H 1.08003 * 122.87795 * 359.97438 * 18 17 16 32 32 H 1.07999 * 124.82250 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8432 13 7 0.7281 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1251 15 7 2.6701 -6.8552 -1.1937 16 6 3.6210 -7.7512 -0.8393 17 6 4.2092 -8.7955 -1.7039 18 6 5.1544 -9.6899 -1.3415 19 7 5.5101 -10.5163 -2.2983 20 6 4.9299 -10.3804 -3.4446 21 16 3.7978 -9.1005 -3.3899 22 7 3.9177 -7.5221 0.4160 23 8 3.2572 -6.5962 0.8371 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.1637 -5.9553 1.2510 30 1 1.3477 -5.1034 2.0500 31 1 5.5811 -9.7227 -0.3499 32 1 5.1283 -10.9916 -4.3126 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325934102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:32 Heat of formation + Delta-G solvation = 82.561198 kcal Electronic energy + Delta-G solvation = -18383.946419 eV Core-core repulsion = 15280.550244 eV Total energy + Delta-G solvation = -3103.396176 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.76867 -40.79644 -38.17786 -37.08953 -35.13714 -33.54120 -32.05537 -31.18577 -28.24431 -27.26769 -25.84565 -24.97178 -23.53969 -22.02622 -20.81287 -19.84486 -19.29703 -18.58574 -18.11865 -17.28084 -17.19075 -16.50999 -16.03827 -15.68885 -15.52184 -15.15493 -14.98272 -14.29453 -14.12234 -13.82553 -13.41983 -13.34188 -12.80069 -12.77805 -12.56603 -12.46860 -12.30435 -11.86279 -11.66598 -11.33808 -11.06594 -10.87974 -10.47909 -10.37555 -10.08641 -9.99348 -8.12190 -6.21505 -0.93531 -0.00210 0.02011 0.55978 1.01677 1.44246 1.44544 1.54087 1.55917 1.73675 2.19431 2.46400 2.80307 3.21586 3.25090 3.50368 3.67712 3.96875 4.07922 4.21174 4.28647 4.38533 4.61058 4.80551 4.89726 4.93933 5.23234 5.60076 5.85221 5.98481 6.00876 6.32057 6.43864 6.46669 6.84831 6.96803 7.46421 8.98967 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.030064 B = 0.003206 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.108943 B = 8731.579965 C = 9045.498381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.090 4.090 11 C 0.200 3.800 12 H 0.128 0.872 13 N -0.817 5.817 14 C 0.177 3.823 15 N -0.491 5.491 16 C 0.237 3.763 17 C -0.211 4.211 18 C 0.090 3.910 19 N -0.497 5.497 20 C 0.038 3.962 21 S 0.237 5.763 22 N -0.384 5.384 23 O 0.082 5.918 24 H 0.262 0.738 25 H -0.007 1.007 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.357 0.643 30 H 0.357 0.643 31 H 0.185 0.815 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -20.892 -5.301 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.129 4.129 11 C 0.085 3.915 12 H 0.145 0.855 13 N -0.348 5.348 14 C -0.047 4.047 15 N -0.224 5.224 16 C -0.034 4.034 17 C -0.334 4.334 18 C -0.069 4.069 19 N -0.210 5.210 20 C -0.257 4.257 21 S 0.491 5.509 22 N -0.093 5.093 23 O 0.023 5.977 24 H 0.071 0.929 25 H 0.012 0.988 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.201 0.799 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 6.496 -20.694 -6.179 22.553 hybrid contribution 1.103 0.263 1.130 1.601 sum 7.599 -20.431 -5.049 22.376 Atomic orbital electron populations 1.70085 1.07494 1.27505 1.51721 1.25842 0.95677 1.02840 0.95064 0.85583 0.78750 0.79225 0.78288 1.20087 1.20873 1.19037 1.21719 0.93384 0.92730 1.50345 0.92665 1.18824 0.93787 0.90802 0.96357 1.21569 0.98222 0.91710 1.01419 1.20528 0.88886 0.85614 0.96479 0.85477 1.58771 1.27131 1.46278 1.02649 1.31009 0.93692 0.97932 0.82048 1.72105 1.16250 1.07202 1.26887 1.22794 0.94722 0.96513 0.89355 1.22964 1.07920 1.02999 0.99540 1.22223 0.94103 0.89976 1.00583 1.66405 1.27814 1.26117 1.00665 1.29539 0.95670 1.00263 1.00238 1.84237 1.36923 1.27628 1.02078 1.74950 1.16081 1.05420 1.12846 1.85243 1.39115 1.34519 1.38797 0.92916 0.98842 0.96254 0.91830 0.92592 0.82759 0.82775 0.79850 0.73398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.04 1.95 4.86 29.85 0.15 2.10 16 10 C -0.09 -3.40 4.78 30.60 0.15 -3.26 16 11 C 0.20 5.99 3.29 44.17 0.15 6.14 16 12 H 0.13 3.83 8.14 -2.39 -0.02 3.81 16 13 N -0.82 -21.62 8.68 -171.79 -1.49 -23.11 16 14 C 0.18 5.14 7.28 88.35 0.64 5.79 16 15 N -0.49 -14.96 11.58 -302.33 -3.50 -18.47 16 16 C 0.24 6.93 8.05 136.98 1.10 8.04 16 17 C -0.21 -5.10 6.52 24.07 0.16 -4.95 16 18 C 0.09 1.99 11.28 84.04 0.95 2.94 16 19 N -0.50 -9.74 10.52 -202.88 -2.13 -11.87 16 20 C 0.04 0.50 12.22 130.63 1.60 2.09 16 21 S 0.24 4.03 23.21 -56.49 -1.31 2.71 16 22 N -0.38 -11.48 12.18 -58.85 -0.72 -12.20 16 23 O 0.08 2.38 11.27 74.46 0.84 3.21 16 24 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 26 H 0.02 1.01 7.75 -2.39 -0.02 0.99 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.36 7.49 9.06 -89.70 -0.81 6.67 16 30 H 0.36 8.63 8.97 -89.69 -0.80 7.82 16 31 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 32 H 0.25 0.84 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -68.08 304.97 -0.86 -68.94 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -0.43 Total: 10.24 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.58 Total: -10.23 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -7.56 Total: -120.66 kcal Atomic # 8 Polarization: 2.38 SS G_CDS: 0.84 Total: 3.21 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.31 Total: 2.71 kcal Total: -68.08 -0.86 -68.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325934102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.497 kcal (2) G-P(sol) polarization free energy of solvation -68.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds