Wall clock time and date at job start Tue Mar 31 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34043 * 126.77658 * 2 1 4 4 N 1.20922 * 111.57175 * 179.97438 * 3 2 1 5 5 C 1.30183 * 111.60089 * 359.74689 * 4 3 2 6 6 C 1.35449 * 126.78160 * 179.97438 * 2 1 3 7 7 C 1.50706 * 128.00155 * 359.97197 * 6 2 1 8 8 S 1.81002 * 109.47200 * 89.99670 * 7 6 2 9 9 C 1.76198 * 99.99878 * 179.97438 * 8 7 6 10 10 N 1.32392 * 126.25713 * 0.02562 * 9 8 7 11 11 N 1.28520 * 110.20260 * 179.97438 * 10 9 8 12 12 C 1.33104 * 109.74470 * 0.02562 * 11 10 9 13 13 C 1.39776 * 126.56173 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99283 * 180.02562 * 13 12 11 15 15 C 1.40075 * 120.00094 * 0.02562 * 13 12 11 16 16 N 1.30819 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47026 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46872 * 120.00292 * 17 15 13 20 20 H 1.48497 * 109.46855 * 240.00129 * 17 15 13 21 21 N 1.36671 * 126.26079 * 179.71290 * 9 8 7 22 22 C 1.46508 * 127.14714 * 0.03496 * 21 9 8 23 23 H 1.08999 * 109.47095 * 270.00170 * 1 2 3 24 24 H 1.09003 * 109.47195 * 30.00268 * 1 2 3 25 25 H 1.08998 * 109.46664 * 149.99841 * 1 2 3 26 26 H 1.07993 * 126.80280 * 180.25123 * 5 4 3 27 27 H 1.09001 * 109.46953 * 209.99374 * 7 6 2 28 28 H 1.09000 * 109.47318 * 329.98971 * 7 6 2 29 29 H 0.96999 * 119.99922 * 179.97438 * 16 15 13 30 30 H 1.09002 * 109.46602 * 90.02732 * 22 21 9 31 31 H 1.08998 * 109.46445 * 210.02383 * 22 21 9 32 32 H 1.08998 * 109.46966 * 330.02280 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7565 0.0005 5 6 3.6214 -0.5372 0.0062 6 6 2.3180 -1.0848 0.0005 7 6 1.9224 -2.5391 0.0017 8 16 1.7633 -3.1225 -1.7043 9 6 1.3080 -4.7995 -1.4129 10 7 1.1519 -5.3743 -0.2305 11 7 0.8168 -6.6064 -0.3768 12 6 0.7374 -6.9001 -1.6726 13 6 0.4013 -8.1385 -2.2266 14 1 0.3691 -8.2592 -3.2994 15 6 0.1061 -9.2229 -1.3905 16 7 0.1446 -9.0765 -0.0911 17 14 -0.3424 -10.8783 -2.1311 18 1 -0.3141 -10.7817 -3.6126 19 1 0.6356 -11.9021 -1.6833 20 1 -1.7047 -11.2669 -1.6858 21 7 1.0456 -5.7432 -2.3660 22 6 1.0862 -5.5674 -3.8199 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3632 -0.8900 -0.5139 26 1 4.5528 -1.0838 0.0118 27 1 2.6861 -3.1229 0.5156 28 1 0.9686 -2.6557 0.5162 29 1 -0.0602 -9.8274 0.4878 30 1 2.0876 -5.7948 -4.1855 31 1 0.3673 -6.2401 -4.2874 32 1 0.8341 -4.5365 -4.0683 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326865021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:47 Heat of formation + Delta-G solvation = 124.291688 kcal Electronic energy + Delta-G solvation = -18641.736608 eV Core-core repulsion = 15540.150002 eV Total energy + Delta-G solvation = -3101.586606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.98391 -40.55067 -35.12667 -33.73623 -33.35252 -33.19440 -29.58068 -29.13669 -27.15526 -26.49091 -25.52643 -22.77550 -21.11952 -20.82662 -20.29203 -17.70942 -17.43575 -17.15073 -16.17545 -15.47832 -14.84377 -14.77223 -14.54186 -14.23733 -13.83911 -13.40235 -13.28391 -12.98207 -12.68444 -12.34849 -12.26993 -12.25213 -11.46106 -11.35841 -11.22079 -10.99153 -10.71757 -10.37831 -10.16880 -9.77545 -9.67226 -9.11888 -8.75515 -8.48444 -8.42671 -6.91100 -6.69133 -4.62116 1.21959 1.80784 2.48694 2.82124 2.87411 3.02341 3.04153 3.08610 3.31432 3.83952 4.19234 4.23662 4.37685 4.53392 4.73997 4.96367 5.28097 5.31353 5.33426 5.49418 5.51232 5.72066 5.78193 5.81877 5.84936 6.00781 6.08858 6.71542 6.84964 7.19789 7.43929 7.83909 8.13905 8.17649 8.66020 8.81138 10.23364 10.58381 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042922 B = 0.003680 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.195389 B = 7607.318364 C = 7795.472161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.012 4.012 3 O 0.093 5.907 4 N -0.369 5.369 5 C 0.010 3.990 6 C -0.189 4.189 7 C -0.013 4.013 8 S -0.046 6.046 9 C 0.042 3.958 10 N -0.285 5.285 11 N -0.333 5.333 12 C 0.347 3.653 13 C -0.447 4.447 14 H 0.085 0.915 15 C 0.078 3.922 16 N -0.736 5.736 17 Si 0.921 3.079 18 H -0.262 1.262 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.515 5.515 22 C 0.101 3.899 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.192 0.808 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.279 0.721 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 11.688 -3.107 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 O 0.030 5.970 4 N -0.074 5.074 5 C -0.170 4.170 6 C -0.195 4.195 7 C -0.162 4.162 8 S 0.183 5.817 9 C -0.329 4.329 10 N -0.132 5.132 11 N -0.180 5.180 12 C 0.103 3.897 13 C -0.487 4.487 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.360 5.360 17 Si 0.744 3.256 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.197 1.197 21 N -0.217 5.217 22 C -0.044 4.044 23 H 0.108 0.892 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.209 0.791 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.241 13.047 -2.393 13.322 hybrid contribution -0.497 -2.273 -0.682 2.425 sum 0.744 10.774 -3.074 11.228 Atomic orbital electron populations 1.20437 0.83676 1.05155 1.04330 1.24340 0.96324 0.85601 1.01583 1.84791 1.11469 1.32991 1.67778 1.73871 0.97125 1.16699 1.19721 1.24940 0.99787 0.90089 1.02143 1.20522 0.92630 0.95681 1.10616 1.21391 1.06699 0.90714 0.97434 1.84629 1.88640 0.99237 1.09222 1.25331 1.21306 0.96392 0.89898 1.74530 1.14973 1.04589 1.19077 1.75465 1.27554 1.02855 1.12161 1.21634 0.94347 0.86548 0.87216 1.18155 1.45033 0.91044 0.94473 0.89719 1.25800 0.93796 1.00583 0.94546 1.70017 1.30410 1.31985 1.03580 0.86065 0.78808 0.80604 0.80074 1.18525 1.19712 1.19703 1.46031 1.60283 1.09726 1.05677 1.21497 1.02024 1.01831 0.79001 0.89173 0.89709 0.88293 0.79054 0.87697 0.87806 0.90988 0.92557 0.90326 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.25 36.00 0.37 -0.30 16 2 C -0.01 -0.14 7.49 -35.31 -0.26 -0.40 16 3 O 0.09 1.19 11.20 17.17 0.19 1.39 16 4 N -0.37 -5.09 12.07 30.36 0.37 -4.73 16 5 C 0.01 0.13 12.16 -17.06 -0.21 -0.07 16 6 C -0.19 -2.49 5.58 -104.42 -0.58 -3.07 16 7 C -0.01 -0.20 5.57 36.01 0.20 0.00 16 8 S -0.05 -0.80 21.77 -107.50 -2.34 -3.14 16 9 C 0.04 0.99 8.09 -87.27 -0.71 0.28 16 10 N -0.29 -7.61 11.62 30.89 0.36 -7.25 16 11 N -0.33 -9.82 10.48 31.26 0.33 -9.49 16 12 C 0.35 9.53 7.53 -154.81 -1.17 8.36 16 13 C -0.45 -11.65 9.04 -38.32 -0.35 -11.99 16 14 H 0.08 2.00 7.31 -52.49 -0.38 1.62 16 15 C 0.08 1.97 5.50 -17.29 -0.10 1.87 16 16 N -0.74 -19.91 11.94 55.56 0.66 -19.25 16 17 Si 0.92 18.19 29.56 -169.99 -5.03 13.16 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 N -0.51 -12.18 3.26 -123.17 -0.40 -12.58 16 22 C 0.10 1.81 10.87 59.85 0.65 2.46 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.10 0.91 8.06 -51.93 -0.42 0.49 16 26 H 0.19 2.03 8.06 -52.49 -0.42 1.60 16 27 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.10 1.60 8.08 -51.92 -0.42 1.18 16 29 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 32 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -32.84 303.03 -6.71 -39.55 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -3.27 Total: 0.63 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.15 Total: -2.87 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 1.31 Total: -53.29 kcal Atomic # 8 Polarization: 1.19 SS G_CDS: 0.19 Total: 1.39 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.34 Total: -3.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.84 -6.71 -39.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326865021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.843 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds