Wall clock time and date at job start Tue Mar 31 2020 02:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34043 * 126.77658 * 2 1 4 4 N 1.20922 * 111.57175 * 179.97438 * 3 2 1 5 5 C 1.30183 * 111.60089 * 359.74689 * 4 3 2 6 6 C 1.35449 * 126.78160 * 179.97438 * 2 1 3 7 7 C 1.50706 * 128.00155 * 359.97197 * 6 2 1 8 8 S 1.81002 * 109.47200 * 89.99670 * 7 6 2 9 9 C 1.76198 * 99.99878 * 179.97438 * 8 7 6 10 10 N 1.32392 * 126.25713 * 0.02562 * 9 8 7 11 11 N 1.28520 * 110.20260 * 179.97438 * 10 9 8 12 12 C 1.33104 * 109.74470 * 0.02562 * 11 10 9 13 13 C 1.39776 * 126.56173 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99283 * 180.02562 * 13 12 11 15 15 C 1.40075 * 120.00094 * 0.02562 * 13 12 11 16 16 N 1.30819 * 120.00176 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47026 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46872 * 120.00292 * 17 15 13 20 20 H 1.48497 * 109.46855 * 240.00129 * 17 15 13 21 21 N 1.36671 * 126.26079 * 179.71290 * 9 8 7 22 22 C 1.46508 * 127.14714 * 0.03496 * 21 9 8 23 23 H 1.08999 * 109.47095 * 270.00170 * 1 2 3 24 24 H 1.09003 * 109.47195 * 30.00268 * 1 2 3 25 25 H 1.08998 * 109.46664 * 149.99841 * 1 2 3 26 26 H 1.07993 * 126.80280 * 180.25123 * 5 4 3 27 27 H 1.09001 * 109.46953 * 209.99374 * 7 6 2 28 28 H 1.09000 * 109.47318 * 329.98971 * 7 6 2 29 29 H 0.96999 * 119.99922 * 179.97438 * 16 15 13 30 30 H 1.09002 * 109.46602 * 90.02732 * 22 21 9 31 31 H 1.08998 * 109.46445 * 210.02383 * 22 21 9 32 32 H 1.08998 * 109.46966 * 330.02280 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7565 0.0005 5 6 3.6214 -0.5372 0.0062 6 6 2.3180 -1.0848 0.0005 7 6 1.9224 -2.5391 0.0017 8 16 1.7633 -3.1225 -1.7043 9 6 1.3080 -4.7995 -1.4129 10 7 1.1519 -5.3743 -0.2305 11 7 0.8168 -6.6064 -0.3768 12 6 0.7374 -6.9001 -1.6726 13 6 0.4013 -8.1385 -2.2266 14 1 0.3691 -8.2592 -3.2994 15 6 0.1061 -9.2229 -1.3905 16 7 0.1446 -9.0765 -0.0911 17 14 -0.3424 -10.8783 -2.1311 18 1 -0.3141 -10.7817 -3.6126 19 1 0.6356 -11.9021 -1.6833 20 1 -1.7047 -11.2669 -1.6858 21 7 1.0456 -5.7432 -2.3660 22 6 1.0862 -5.5674 -3.8199 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3632 -0.8900 -0.5139 26 1 4.5528 -1.0838 0.0118 27 1 2.6861 -3.1229 0.5156 28 1 0.9686 -2.6557 0.5162 29 1 -0.0602 -9.8274 0.4878 30 1 2.0876 -5.7948 -4.1855 31 1 0.3673 -6.2401 -4.2874 32 1 0.8341 -4.5365 -4.0683 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326865021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:46 Heat of formation + Delta-G solvation = 104.546286 kcal Electronic energy + Delta-G solvation = -18642.592833 eV Core-core repulsion = 15540.150002 eV Total energy + Delta-G solvation = -3102.442831 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.99977 -42.44022 -36.17290 -35.61018 -35.12213 -34.14581 -31.35256 -30.34423 -28.34715 -27.96324 -27.33406 -23.82583 -22.78297 -22.50131 -21.67593 -19.25635 -18.72972 -18.26345 -17.69280 -17.20869 -16.56874 -16.21087 -15.76833 -15.44380 -15.30296 -14.96324 -14.12704 -13.97169 -13.96614 -13.80399 -13.60908 -13.23290 -13.10365 -12.95871 -12.76871 -12.22232 -12.16599 -11.92023 -11.68448 -11.45519 -11.27106 -10.57057 -10.39693 -10.27374 -10.09795 -8.55043 -8.53796 -6.57693 0.07086 0.61982 1.06652 1.19987 1.43174 1.55928 1.60828 1.61997 2.08057 2.19541 2.45865 2.52076 3.21793 3.34978 3.61997 3.64429 3.97530 4.09123 4.41500 4.45754 4.50010 4.62810 4.64376 4.69840 4.79815 4.89297 4.95379 4.98320 5.20537 5.33136 5.57476 6.04799 6.23189 6.76887 6.93010 7.19277 8.41916 8.65262 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042922 B = 0.003680 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.195389 B = 7607.318364 C = 7795.472161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.008 3.992 3 O 0.091 5.909 4 N -0.388 5.388 5 C 0.011 3.989 6 C -0.211 4.211 7 C -0.005 4.005 8 S 0.001 5.999 9 C 0.054 3.946 10 N -0.328 5.328 11 N -0.388 5.388 12 C 0.317 3.683 13 C -0.472 4.472 14 H 0.103 0.897 15 C 0.030 3.970 16 N -0.788 5.788 17 Si 1.006 2.994 18 H -0.246 1.246 19 H -0.269 1.269 20 H -0.267 1.267 21 N -0.521 5.521 22 C 0.093 3.907 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.209 0.791 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.284 0.716 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 12.501 -4.857 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 O 0.029 5.971 4 N -0.094 5.094 5 C -0.168 4.168 6 C -0.217 4.217 7 C -0.154 4.154 8 S 0.229 5.771 9 C -0.319 4.319 10 N -0.173 5.173 11 N -0.234 5.234 12 C 0.071 3.929 13 C -0.512 4.512 14 H 0.121 0.879 15 C -0.191 4.191 16 N -0.413 5.413 17 Si 0.825 3.175 18 H -0.169 1.169 19 H -0.193 1.193 20 H -0.192 1.192 21 N -0.223 5.223 22 C -0.050 4.050 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.112 0.888 26 H 0.226 0.774 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.894 13.889 -4.159 14.526 hybrid contribution -0.346 -2.263 -0.149 2.294 sum 0.548 11.626 -4.309 12.410 Atomic orbital electron populations 1.20651 0.81321 1.06097 1.05792 1.24877 0.97493 0.84834 0.98698 1.84789 1.11366 1.33171 1.67734 1.73876 0.97646 1.17046 1.20879 1.25265 1.00453 0.89969 1.01160 1.20333 0.93349 0.94748 1.13252 1.21303 1.06301 0.91879 0.95924 1.84461 1.87580 0.94278 1.10774 1.26425 1.17395 0.98860 0.89266 1.74405 1.17634 1.04346 1.20911 1.75325 1.29635 1.04406 1.14066 1.22036 0.95297 0.88157 0.87419 1.18656 1.45694 0.91278 0.95576 0.87931 1.26958 0.92772 1.04702 0.94654 1.70158 1.31948 1.33630 1.05536 0.84815 0.78378 0.74579 0.79753 1.16863 1.19344 1.19189 1.46375 1.59371 1.08785 1.07759 1.21849 1.03458 1.03764 0.75882 0.87349 0.87246 0.88787 0.77388 0.88755 0.88121 0.90549 0.90929 0.89295 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.25 71.23 0.73 -0.43 16 2 C 0.01 0.17 7.49 25.04 0.19 0.36 16 3 O 0.09 2.14 11.20 71.61 0.80 2.95 16 4 N -0.39 -10.08 12.07 -59.26 -0.72 -10.80 16 5 C 0.01 0.28 12.16 85.71 1.04 1.32 16 6 C -0.21 -5.22 5.58 -19.73 -0.11 -5.33 16 7 C -0.01 -0.15 5.57 71.24 0.40 0.25 16 8 S 0.00 0.02 21.77 -56.49 -1.23 -1.21 16 9 C 0.05 2.52 8.09 179.18 1.45 3.97 16 10 N -0.33 -18.02 11.62 -56.17 -0.65 -18.67 16 11 N -0.39 -23.79 10.48 -55.02 -0.58 -24.37 16 12 C 0.32 17.83 7.53 133.23 1.00 18.83 16 13 C -0.47 -24.86 9.04 23.09 0.21 -24.65 16 14 H 0.10 4.79 7.31 -2.91 -0.02 4.77 16 15 C 0.03 1.52 5.50 85.29 0.47 1.99 16 16 N -0.79 -44.09 11.94 21.85 0.26 -43.83 16 17 Si 1.01 37.13 29.56 68.60 2.03 39.16 16 18 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 19 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 20 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 21 N -0.52 -24.54 3.26 -543.60 -1.77 -26.31 16 22 C 0.09 3.16 10.87 127.77 1.39 4.55 16 23 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.09 1.50 8.06 -2.39 -0.02 1.48 16 26 H 0.21 4.09 8.06 -2.91 -0.02 4.06 16 27 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.10 3.06 8.08 -2.40 -0.02 3.04 16 29 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.09 2.82 7.54 -2.39 -0.02 2.80 16 32 H 0.09 2.61 7.84 -2.39 -0.02 2.59 16 Total: -1.00 -73.99 303.03 6.06 -67.92 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.15 Total: 14.32 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 6.77 Total: 0.84 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -3.45 Total: -123.98 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.80 Total: 2.95 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.23 Total: -1.21 kcal Total: -73.99 6.06 -67.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326865021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.470 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds