Wall clock time and date at job start Tue Mar 31 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38038 * 126.24115 * 2 1 4 4 C 1.43205 * 126.43169 * 359.97438 * 3 2 1 5 5 N 3.56514 * 90.82380 * 359.97438 * 2 1 3 6 6 C 1.41796 * 107.13093 * 179.71587 * 3 2 1 7 7 N 1.39824 * 126.05800 * 180.27437 * 6 3 2 8 8 C 1.34780 * 119.99919 * 180.02562 * 7 6 3 9 9 O 1.21282 * 120.00069 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99971 * 180.02562 * 8 7 6 11 11 S 1.80995 * 109.47090 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00055 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99949 * 180.02562 * 12 11 10 15 15 N 1.31632 * 120.00310 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99919 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47398 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47713 * 119.99556 * 16 14 12 19 19 H 1.48502 * 109.47318 * 239.99619 * 16 14 12 20 20 N 1.30935 * 107.88265 * 0.24075 * 6 3 2 21 21 N 1.34366 * 126.23689 * 180.12668 * 2 1 3 22 22 C 1.46502 * 125.69662 * 0.03621 * 21 2 1 23 23 H 1.09003 * 109.46543 * 90.02813 * 1 2 3 24 24 H 1.08997 * 109.47113 * 210.02775 * 1 2 3 25 25 H 1.08999 * 109.47002 * 330.02948 * 1 2 3 26 26 H 0.97004 * 120.00194 * 0.02562 * 7 6 3 27 27 H 1.09001 * 109.46711 * 300.00170 * 10 8 7 28 28 H 1.09001 * 109.46988 * 60.00136 * 10 8 7 29 29 H 0.96996 * 119.99999 * 180.02562 * 15 14 12 30 30 H 1.08995 * 109.46982 * 270.26687 * 22 21 2 31 31 H 1.09001 * 109.46536 * 30.27020 * 22 21 2 32 32 H 1.09004 * 109.46456 * 150.26467 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3231 1.1133 0.0000 4 6 1.8966 2.4804 -0.0005 5 7 1.5583 3.5648 -0.0016 6 6 3.6629 0.6491 0.0067 7 7 4.8106 1.4478 0.0144 8 6 6.0304 0.8746 0.0197 9 8 6.1326 -0.3339 0.0174 10 6 7.2674 1.7353 0.0286 11 16 8.7373 0.6792 0.0334 12 6 9.9982 1.9099 0.0442 13 1 9.7314 2.9564 0.0455 14 6 11.3344 1.5343 0.0498 15 7 11.6597 0.2588 0.0477 16 14 12.6712 2.8390 0.0619 17 1 12.0476 4.1868 0.0632 18 1 13.5080 2.6793 1.2783 19 1 13.5209 2.6884 -1.1466 20 7 3.6348 -0.6599 0.0052 21 7 2.3013 -1.0838 -0.0024 22 6 1.8470 -2.4766 -0.0062 23 1 -0.3632 -0.0005 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 4.7289 2.4143 0.0158 27 1 7.2770 2.3667 -0.8599 28 1 7.2672 2.3625 0.9201 29 1 12.5934 -0.0036 0.0520 30 1 1.7292 -2.8231 1.0204 31 1 0.8907 -2.5453 -0.5249 32 1 2.5830 -3.0973 -0.5172 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328535144.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:43 Heat of formation + Delta-G solvation = 75.515026 kcal Electronic energy + Delta-G solvation = -18220.672670 eV Core-core repulsion = 15116.970949 eV Total energy + Delta-G solvation = -3103.701721 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.76852 -39.24722 -36.59240 -35.15317 -32.72019 -32.44766 -32.42167 -29.41070 -28.07295 -26.56715 -25.50110 -22.58384 -21.75333 -19.59378 -18.64520 -17.64978 -16.94410 -16.27838 -16.20602 -15.68738 -15.07490 -14.81685 -14.18013 -14.04740 -13.89470 -13.56396 -13.45973 -13.35908 -12.90798 -12.87349 -12.79187 -12.65717 -12.35304 -12.06802 -11.07741 -11.04814 -10.84776 -10.75884 -10.75000 -9.84338 -9.54643 -9.09040 -8.96024 -8.47041 -8.28288 -6.53426 -6.23653 -3.94831 1.15690 1.93480 1.96169 2.54078 2.80899 3.04219 3.21536 3.24919 3.30805 3.48601 3.51036 3.95462 4.14471 4.18025 4.31826 4.63703 4.84036 4.88153 4.97204 5.09080 5.11982 5.20220 5.28446 5.38150 5.49699 5.67192 5.80213 6.06957 6.50361 6.59325 7.00394 7.46529 7.58792 7.70202 8.33798 8.38272 9.22049 10.83813 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.003460 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.904477 B = 8091.258735 C = 8919.403916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.162 3.838 3 C -0.217 4.217 4 C 0.294 3.706 5 N -0.436 5.436 6 C 0.355 3.645 7 N -0.644 5.644 8 C 0.525 3.475 9 O -0.461 6.461 10 C -0.152 4.152 11 S -0.054 6.054 12 C -0.536 4.536 13 H 0.075 0.925 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.268 5.268 21 N -0.352 5.352 22 C 0.098 3.902 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.419 0.581 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.268 0.732 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.447 -2.346 -0.190 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.025 3.975 3 C -0.235 4.235 4 C -0.020 4.020 5 N -0.114 5.114 6 C 0.094 3.906 7 N -0.297 5.297 8 C 0.311 3.689 9 O -0.328 6.328 10 C -0.302 4.302 11 S 0.172 5.828 12 C -0.684 4.684 13 H 0.093 0.907 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.096 5.096 21 N -0.130 5.130 22 C -0.043 4.043 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.256 0.744 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.843 -4.078 -0.195 23.205 hybrid contribution 0.459 2.963 0.024 2.998 sum -22.383 -1.116 -0.170 22.412 Atomic orbital electron populations 1.20634 0.86093 1.04812 1.04362 1.21303 0.94535 0.85909 0.95767 1.15371 0.90917 0.86495 1.30765 1.24386 0.93874 0.91386 0.92383 1.81287 1.07082 1.10832 1.12187 1.19121 0.85617 0.89697 0.96142 1.43308 1.02536 1.09611 1.74211 1.20696 0.83178 0.89478 0.75553 1.90806 1.85083 1.13924 1.42972 1.23537 0.97596 1.03522 1.05580 1.85434 0.91705 1.08902 1.96753 1.22906 0.92468 0.94030 1.59012 0.90713 1.24995 0.98003 0.96104 0.94460 1.70023 1.18438 1.14941 1.46834 0.86100 0.80649 0.80747 0.77905 1.19565 1.20552 1.20558 1.78164 0.93256 1.08960 1.29218 1.48268 1.03733 1.06321 1.54655 1.22022 1.01251 0.76864 1.04158 0.88955 0.89813 0.89167 0.74361 0.88585 0.88581 0.92190 0.89920 0.89022 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 9.68 36.01 0.35 -0.08 16 2 C 0.16 1.45 7.00 -81.56 -0.57 0.88 16 3 C -0.22 -2.53 5.98 -106.68 -0.64 -3.17 16 4 C 0.29 3.51 15.20 -22.47 -0.34 3.17 16 5 N -0.44 -5.87 18.54 41.83 0.78 -5.09 16 6 C 0.35 5.21 7.81 -154.42 -1.21 4.01 16 7 N -0.64 -9.59 5.44 -10.92 -0.06 -9.65 16 8 C 0.53 9.95 7.81 -10.98 -0.09 9.87 16 9 O -0.46 -10.51 14.58 5.56 0.08 -10.43 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 S -0.05 -1.46 20.57 -107.50 -2.21 -3.67 16 12 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 13 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 14 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 16 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 N -0.27 -4.20 10.73 31.62 0.34 -3.86 16 21 N -0.35 -3.66 3.98 -63.32 -0.25 -3.91 16 22 C 0.10 0.54 11.05 59.85 0.66 1.20 16 23 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.08 0.17 7.70 -51.93 -0.40 -0.23 16 25 H 0.09 0.40 7.94 -51.93 -0.41 -0.02 16 26 H 0.42 4.94 8.61 -40.82 -0.35 4.59 16 27 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 28 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.19 7.63 -51.93 -0.40 -0.21 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -37.28 312.32 -5.54 -42.82 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.22 Total: -2.25 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.41 Total: 0.26 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 1.54 Total: -47.75 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -37.28 -5.54 -42.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328535144.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.336 kcal (2) G-P(sol) polarization free energy of solvation -37.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds