Wall clock time and date at job start Tue Mar 31 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38038 * 126.24115 * 2 1 4 4 C 1.43205 * 126.43169 * 359.97438 * 3 2 1 5 5 N 3.56514 * 90.82380 * 359.97438 * 2 1 3 6 6 C 1.41796 * 107.13093 * 179.71587 * 3 2 1 7 7 N 1.39824 * 126.05800 * 180.27437 * 6 3 2 8 8 C 1.34780 * 119.99919 * 180.02562 * 7 6 3 9 9 O 1.21282 * 120.00069 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99971 * 180.02562 * 8 7 6 11 11 S 1.80995 * 109.47090 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00055 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.38796 * 119.99949 * 180.02562 * 12 11 10 15 15 N 1.31632 * 120.00310 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99919 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47398 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47713 * 119.99556 * 16 14 12 19 19 H 1.48502 * 109.47318 * 239.99619 * 16 14 12 20 20 N 1.30935 * 107.88265 * 0.24075 * 6 3 2 21 21 N 1.34366 * 126.23689 * 180.12668 * 2 1 3 22 22 C 1.46502 * 125.69662 * 0.03621 * 21 2 1 23 23 H 1.09003 * 109.46543 * 90.02813 * 1 2 3 24 24 H 1.08997 * 109.47113 * 210.02775 * 1 2 3 25 25 H 1.08999 * 109.47002 * 330.02948 * 1 2 3 26 26 H 0.97004 * 120.00194 * 0.02562 * 7 6 3 27 27 H 1.09001 * 109.46711 * 300.00170 * 10 8 7 28 28 H 1.09001 * 109.46988 * 60.00136 * 10 8 7 29 29 H 0.96996 * 119.99999 * 180.02562 * 15 14 12 30 30 H 1.08995 * 109.46982 * 270.26687 * 22 21 2 31 31 H 1.09001 * 109.46536 * 30.27020 * 22 21 2 32 32 H 1.09004 * 109.46456 * 150.26467 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3231 1.1133 0.0000 4 6 1.8966 2.4804 -0.0005 5 7 1.5583 3.5648 -0.0016 6 6 3.6629 0.6491 0.0067 7 7 4.8106 1.4478 0.0144 8 6 6.0304 0.8746 0.0197 9 8 6.1326 -0.3339 0.0174 10 6 7.2674 1.7353 0.0286 11 16 8.7373 0.6792 0.0334 12 6 9.9982 1.9099 0.0442 13 1 9.7314 2.9564 0.0455 14 6 11.3344 1.5343 0.0498 15 7 11.6597 0.2588 0.0477 16 14 12.6712 2.8390 0.0619 17 1 12.0476 4.1868 0.0632 18 1 13.5080 2.6793 1.2783 19 1 13.5209 2.6884 -1.1466 20 7 3.6348 -0.6599 0.0052 21 7 2.3013 -1.0838 -0.0024 22 6 1.8470 -2.4766 -0.0062 23 1 -0.3632 -0.0005 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 4.7289 2.4143 0.0158 27 1 7.2770 2.3667 -0.8599 28 1 7.2672 2.3625 0.9201 29 1 12.5934 -0.0036 0.0520 30 1 1.7292 -2.8231 1.0204 31 1 0.8907 -2.5453 -0.5249 32 1 2.5830 -3.0973 -0.5172 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328535144.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:43 Heat of formation + Delta-G solvation = 48.970205 kcal Electronic energy + Delta-G solvation = -18221.823740 eV Core-core repulsion = 15116.970949 eV Total energy + Delta-G solvation = -3104.852791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.69600 -40.65017 -37.56261 -36.35818 -34.58812 -33.71999 -33.11268 -30.90069 -28.76620 -27.72852 -27.21645 -23.73416 -22.73070 -20.68978 -20.14128 -19.16603 -17.98293 -17.63178 -17.18886 -16.88302 -16.53584 -16.39504 -15.97379 -15.03728 -14.79677 -14.66230 -14.53057 -14.28952 -14.08945 -13.83248 -13.53636 -13.37051 -13.32209 -13.16888 -13.00286 -12.91425 -12.61530 -11.86167 -11.79956 -11.72991 -11.15953 -11.02616 -10.30337 -9.90906 -9.46659 -8.67782 -8.35296 -6.13411 0.41019 0.78553 1.00322 1.32621 1.41853 1.48058 1.58113 1.60835 1.71770 2.04157 2.25791 2.51405 2.99340 3.00864 3.26389 3.48520 3.61337 3.88304 4.07190 4.24038 4.38614 4.45813 4.48762 4.58086 4.71546 4.78738 4.85054 5.08511 5.41744 5.42813 5.85061 5.93643 6.20174 6.53303 6.63363 7.01365 7.06550 8.74144 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.032783 B = 0.003460 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.904477 B = 8091.258735 C = 8919.403916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.189 3.811 3 C -0.234 4.234 4 C 0.315 3.685 5 N -0.465 5.465 6 C 0.334 3.666 7 N -0.629 5.629 8 C 0.532 3.468 9 O -0.507 6.507 10 C -0.128 4.128 11 S -0.141 6.141 12 C -0.546 4.546 13 H 0.085 0.915 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.274 1.274 20 N -0.323 5.323 21 N -0.348 5.348 22 C 0.085 3.915 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.433 0.567 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.137 0.863 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.717 -1.310 -0.219 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 C -0.252 4.252 4 C 0.001 3.999 5 N -0.143 5.143 6 C 0.075 3.925 7 N -0.282 5.282 8 C 0.317 3.683 9 O -0.377 6.377 10 C -0.279 4.279 11 S 0.086 5.914 12 C -0.694 4.694 13 H 0.103 0.897 14 C -0.191 4.191 15 N -0.547 5.547 16 Si 0.821 3.179 17 H -0.181 1.181 18 H -0.199 1.199 19 H -0.200 1.200 20 N -0.151 5.151 21 N -0.126 5.126 22 C -0.054 4.054 23 H 0.133 0.867 24 H 0.134 0.866 25 H 0.111 0.889 26 H 0.273 0.727 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.163 -3.024 -0.223 25.345 hybrid contribution 0.945 2.539 0.033 2.709 sum -24.218 -0.485 -0.190 24.224 Atomic orbital electron populations 1.20910 0.82084 1.06566 1.06231 1.22014 0.96408 0.84341 0.92172 1.15414 0.89972 0.87099 1.32714 1.24278 0.93082 0.91091 0.91433 1.81311 1.08046 1.11418 1.13529 1.19274 0.86099 0.89867 0.97297 1.42886 1.01772 1.10368 1.73146 1.20426 0.84055 0.88628 0.75146 1.90790 1.85874 1.15618 1.45433 1.23352 0.94601 1.02330 1.07623 1.85592 0.95983 1.12735 1.97075 1.23245 0.92998 0.94333 1.58847 0.89736 1.26112 1.00732 0.98506 0.93720 1.70181 1.19130 1.17390 1.48003 0.84902 0.77025 0.77941 0.78053 1.18067 1.19950 1.19954 1.78019 0.97033 1.09803 1.30294 1.48596 1.02185 1.08220 1.53618 1.22495 1.02762 0.74349 1.05775 0.86731 0.86596 0.88880 0.72690 0.86416 0.86416 0.91958 0.88334 0.84527 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 9.68 71.24 0.69 0.27 16 2 C 0.19 2.88 7.00 42.12 0.30 3.18 16 3 C -0.23 -5.13 5.98 -21.20 -0.13 -5.26 16 4 C 0.32 7.07 15.20 88.33 1.34 8.41 16 5 N -0.46 -11.92 18.54 19.00 0.35 -11.57 16 6 C 0.33 9.75 7.81 133.87 1.05 10.80 16 7 N -0.63 -18.66 5.44 -306.85 -1.67 -20.33 16 8 C 0.53 20.47 7.81 87.66 0.68 21.16 16 9 O -0.51 -24.03 14.58 -3.04 -0.04 -24.07 16 10 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 11 S -0.14 -7.78 20.57 -56.49 -1.16 -8.95 16 12 C -0.55 -31.07 9.50 67.95 0.65 -30.43 16 13 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 14 C 0.01 0.80 5.49 84.86 0.47 1.27 16 15 N -0.91 -55.80 13.22 21.65 0.29 -55.51 16 16 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 17 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 N -0.32 -10.16 10.73 -53.89 -0.58 -10.74 16 21 N -0.35 -6.63 3.98 -354.23 -1.41 -8.04 16 22 C 0.08 0.73 11.05 127.77 1.41 2.14 16 23 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 24 H 0.12 -0.18 7.70 -2.39 -0.02 -0.20 16 25 H 0.09 0.45 7.94 -2.39 -0.02 0.43 16 26 H 0.43 9.90 8.61 -92.71 -0.80 9.10 16 27 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 28 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.14 -0.07 7.63 -2.39 -0.02 -0.08 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -85.15 312.32 5.07 -80.08 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: 0.38 Total: 6.51 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.89 Total: 6.91 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.02 Total: -106.19 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.04 Total: -24.07 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.16 Total: -8.95 kcal Total: -85.15 5.07 -80.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328535144.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.047 kcal (2) G-P(sol) polarization free energy of solvation -85.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds