Wall clock time and date at job start Tue Mar 31 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30245 * 119.65630 * 2 1 4 4 N 1.39775 * 121.02770 * 179.97438 * 3 2 1 5 5 C 1.46493 * 119.52531 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47559 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47135 * 59.99705 * 5 4 3 8 8 C 1.50698 * 109.47362 * 299.99951 * 5 4 3 9 9 H 1.08007 * 120.00051 * 34.99756 * 8 5 4 10 10 C 1.37875 * 120.00552 * 215.00611 * 8 5 4 11 11 N 1.31511 * 120.00672 * 184.91458 * 10 8 5 12 12 Si 1.86805 * 119.99596 * 4.90958 * 10 8 5 13 13 H 1.48496 * 109.47299 * 84.84005 * 12 10 8 14 14 H 1.48504 * 109.46889 * 204.84174 * 12 10 8 15 15 H 1.48501 * 109.47123 * 324.84078 * 12 10 8 16 16 C 1.34453 * 120.95840 * 359.97438 * 4 3 2 17 17 O 1.21997 * 120.15186 * 179.97438 * 16 4 3 18 18 C 1.43107 * 119.69345 * 359.97438 * 16 4 3 19 19 N 1.34258 * 129.23601 * 180.02562 * 18 16 4 20 20 C 1.29040 * 117.86529 * 180.02562 * 19 18 16 21 21 N 1.38101 * 124.90845 * 180.02562 * 20 19 18 22 22 S 1.75850 * 110.17829 * 359.97438 * 20 19 18 23 23 C 1.39159 * 117.60496 * 0.02562 * 18 16 4 24 24 H 1.08994 * 109.47658 * 270.02511 * 1 2 3 25 25 H 1.08999 * 109.47438 * 30.02690 * 1 2 3 26 26 H 1.09005 * 109.47090 * 150.01935 * 1 2 3 27 27 H 1.08999 * 109.46969 * 295.00579 * 7 5 4 28 28 H 1.08999 * 109.47087 * 55.00519 * 7 5 4 29 29 H 1.09005 * 109.47454 * 175.00593 * 7 5 4 30 30 H 0.96997 * 120.00390 * 179.97438 * 11 10 8 31 31 H 0.97002 * 120.00239 * 359.97438 * 21 20 19 32 32 H 0.96998 * 119.99626 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1514 1.1318 0.0000 4 7 3.5488 1.1653 0.0005 5 6 4.2400 2.4569 0.0011 6 1 5.3174 2.2924 0.0019 7 6 3.8442 3.2466 1.2503 8 6 3.8512 3.2353 -1.2293 9 1 2.8487 3.1568 -1.6236 10 6 4.7750 4.0476 -1.8519 11 7 4.4107 4.8006 -2.8666 12 14 6.5445 4.0786 -1.2537 13 1 7.3006 2.9684 -1.8868 14 1 7.1684 5.3752 -1.6211 15 1 6.5710 3.9171 0.2222 16 6 4.2678 0.0292 0.0016 17 8 5.4869 0.0756 0.0016 18 6 3.5965 -1.2346 0.0027 19 7 4.1165 -2.4724 0.0043 20 6 3.2983 -3.4703 0.0046 21 7 3.6730 -4.7995 0.0067 22 16 1.6373 -2.8929 0.0034 23 6 2.2049 -1.2256 0.0021 24 1 -0.3634 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5136 27 1 2.7821 3.4878 1.2063 28 1 4.0439 2.6465 2.1380 29 1 4.4244 4.1682 1.2967 30 1 5.0606 5.3723 -3.3043 31 1 4.6132 -5.0384 0.0077 32 1 2.9961 -5.4942 0.0071 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332276285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:13 Heat of formation + Delta-G solvation = 60.071883 kcal Electronic energy + Delta-G solvation = -19605.761315 eV Core-core repulsion = 16501.389929 eV Total energy + Delta-G solvation = -3104.371386 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78422 -38.48014 -36.94604 -35.21038 -34.01387 -32.45376 -30.67572 -29.35845 -27.59722 -25.45202 -25.20047 -22.75954 -21.76278 -20.56246 -19.01543 -17.83920 -17.34149 -16.76366 -16.26546 -15.74501 -15.42970 -15.32063 -14.30504 -14.10256 -13.92779 -13.54691 -13.25726 -12.58413 -12.43497 -12.39038 -11.89257 -11.78612 -11.47067 -11.31657 -11.02758 -10.83742 -10.65251 -10.30146 -9.84785 -9.66876 -9.51823 -9.28576 -9.18514 -8.66340 -8.34002 -7.53782 -6.22061 -4.24333 0.29564 0.80532 1.42206 2.06118 2.35110 2.66798 3.14818 3.32378 3.35783 3.43390 3.90880 4.19570 4.33562 4.65940 4.81010 5.13001 5.29679 5.57122 5.61745 5.67256 6.07245 6.19624 6.32012 6.41016 6.51592 6.60657 6.68946 6.89819 7.10334 7.21670 7.46561 7.71931 8.21185 8.45933 8.60175 8.87577 9.37397 10.89066 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.005924 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.339167 B = 4725.211039 C = 5368.140941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.118 3.882 3 N -0.181 5.181 4 N -0.369 5.369 5 C 0.234 3.766 6 H 0.077 0.923 7 C -0.144 4.144 8 C -0.518 4.518 9 H 0.088 0.912 10 C 0.082 3.918 11 N -0.882 5.882 12 Si 0.868 3.132 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.261 1.261 16 C 0.530 3.470 17 O -0.526 6.526 18 C 0.085 3.915 19 N -0.501 5.501 20 C 0.352 3.648 21 N -0.812 5.812 22 S 0.103 5.897 23 C -0.201 4.201 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.415 0.585 32 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.771 -17.408 7.077 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 N 0.003 4.997 4 N -0.188 5.188 5 C 0.136 3.864 6 H 0.094 0.906 7 C -0.202 4.202 8 C -0.556 4.556 9 H 0.106 0.894 10 C -0.123 4.123 11 N -0.518 5.518 12 Si 0.694 3.306 13 H -0.193 1.193 14 H -0.209 1.209 15 H -0.185 1.185 16 C 0.319 3.681 17 O -0.402 6.402 18 C -0.053 4.053 19 N -0.225 5.225 20 C -0.026 4.026 21 N -0.366 5.366 22 S 0.349 5.651 23 C -0.329 4.329 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.248 0.752 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.430 -16.757 6.933 19.998 hybrid contribution 1.812 -0.553 0.060 1.895 sum -6.619 -17.310 6.994 19.808 Atomic orbital electron populations 1.20572 0.86484 1.03999 1.03497 1.21320 0.97356 0.85611 1.02025 1.75054 0.92583 1.22538 1.09531 1.50476 1.00311 1.08464 1.59560 1.19785 0.93251 0.76624 0.96710 0.90569 1.22183 1.02598 0.99649 0.95805 1.21077 1.00496 1.24760 1.09256 0.89382 1.24966 0.98567 0.94654 0.94109 1.69868 1.35211 1.25243 1.21435 0.86983 0.85320 0.77930 0.80390 1.19312 1.20857 1.18549 1.16770 0.87874 0.82967 0.80458 1.90909 1.11978 1.86304 1.51045 1.20030 0.89100 0.92267 1.03924 1.65813 1.35231 0.96834 1.24575 1.23868 0.91112 0.90140 0.97449 1.41395 1.11900 1.00350 1.82930 1.84456 1.07076 0.97746 1.75805 1.24530 0.96871 0.97765 1.13747 0.89987 0.89283 0.90810 0.91823 0.95509 0.91848 0.92114 0.75205 0.75280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 10.08 36.00 0.36 -0.62 16 2 C 0.12 1.98 6.91 -82.20 -0.57 1.42 16 3 N -0.18 -3.78 10.76 33.81 0.36 -3.42 16 4 N -0.37 -8.86 3.26 -57.42 -0.19 -9.04 16 5 C 0.23 5.98 2.35 -69.09 -0.16 5.82 16 6 H 0.08 2.08 4.00 -51.93 -0.21 1.87 16 7 C -0.14 -3.18 9.25 37.16 0.34 -2.84 16 8 C -0.52 -14.75 8.95 -34.44 -0.31 -15.06 16 9 H 0.09 2.70 7.95 -52.48 -0.42 2.29 16 10 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 11 N -0.88 -26.57 13.96 55.43 0.77 -25.79 16 12 Si 0.87 22.12 26.99 -169.99 -4.59 17.53 16 13 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.26 -6.37 6.82 56.52 0.39 -5.98 16 16 C 0.53 12.88 7.56 -14.52 -0.11 12.77 16 17 O -0.53 -14.32 16.40 4.92 0.08 -14.24 16 18 C 0.09 1.74 6.92 -84.58 -0.59 1.15 16 19 N -0.50 -9.11 10.60 -10.85 -0.11 -9.23 16 20 C 0.35 4.54 8.76 -88.70 -0.78 3.76 16 21 N -0.81 -6.30 9.05 30.52 0.28 -6.02 16 22 S 0.10 1.15 22.85 -107.50 -2.46 -1.30 16 23 C -0.20 -3.34 6.37 -38.18 -0.24 -3.58 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.07 0.68 7.69 -51.93 -0.40 0.28 16 27 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.42 2.90 8.95 -40.82 -0.37 2.53 16 32 H 0.42 1.69 8.95 -40.82 -0.37 1.32 16 LS Contribution 294.03 15.07 4.43 4.43 Total: -1.00 -36.11 294.03 -6.58 -42.69 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -3.02 Total: -0.70 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.14 Total: 5.10 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 1.11 Total: -53.51 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.08 Total: -14.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.59 Total: 17.53 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.46 Total: -1.30 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -36.11 -6.58 -42.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332276285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.765 kcal (2) G-P(sol) polarization free energy of solvation -36.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds