Wall clock time and date at job start Tue Mar 31 2020 01:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30245 * 119.65630 * 2 1 4 4 N 1.39775 * 121.02770 * 179.97438 * 3 2 1 5 5 C 1.46493 * 119.52531 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.47559 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47135 * 59.99705 * 5 4 3 8 8 C 1.50698 * 109.47362 * 299.99951 * 5 4 3 9 9 H 1.08007 * 120.00051 * 34.99756 * 8 5 4 10 10 C 1.37875 * 120.00552 * 215.00611 * 8 5 4 11 11 N 1.31511 * 120.00672 * 184.91458 * 10 8 5 12 12 Si 1.86805 * 119.99596 * 4.90958 * 10 8 5 13 13 H 1.48496 * 109.47299 * 84.84005 * 12 10 8 14 14 H 1.48504 * 109.46889 * 204.84174 * 12 10 8 15 15 H 1.48501 * 109.47123 * 324.84078 * 12 10 8 16 16 C 1.34453 * 120.95840 * 359.97438 * 4 3 2 17 17 O 1.21997 * 120.15186 * 179.97438 * 16 4 3 18 18 C 1.43107 * 119.69345 * 359.97438 * 16 4 3 19 19 N 1.34258 * 129.23601 * 180.02562 * 18 16 4 20 20 C 1.29040 * 117.86529 * 180.02562 * 19 18 16 21 21 N 1.38101 * 124.90845 * 180.02562 * 20 19 18 22 22 S 1.75850 * 110.17829 * 359.97438 * 20 19 18 23 23 C 1.39159 * 117.60496 * 0.02562 * 18 16 4 24 24 H 1.08994 * 109.47658 * 270.02511 * 1 2 3 25 25 H 1.08999 * 109.47438 * 30.02690 * 1 2 3 26 26 H 1.09005 * 109.47090 * 150.01935 * 1 2 3 27 27 H 1.08999 * 109.46969 * 295.00579 * 7 5 4 28 28 H 1.08999 * 109.47087 * 55.00519 * 7 5 4 29 29 H 1.09005 * 109.47454 * 175.00593 * 7 5 4 30 30 H 0.96997 * 120.00390 * 179.97438 * 11 10 8 31 31 H 0.97002 * 120.00239 * 359.97438 * 21 20 19 32 32 H 0.96998 * 119.99626 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1514 1.1318 0.0000 4 7 3.5488 1.1653 0.0005 5 6 4.2400 2.4569 0.0011 6 1 5.3174 2.2924 0.0019 7 6 3.8442 3.2466 1.2503 8 6 3.8512 3.2353 -1.2293 9 1 2.8487 3.1568 -1.6236 10 6 4.7750 4.0476 -1.8519 11 7 4.4107 4.8006 -2.8666 12 14 6.5445 4.0786 -1.2537 13 1 7.3006 2.9684 -1.8868 14 1 7.1684 5.3752 -1.6211 15 1 6.5710 3.9171 0.2222 16 6 4.2678 0.0292 0.0016 17 8 5.4869 0.0756 0.0016 18 6 3.5965 -1.2346 0.0027 19 7 4.1165 -2.4724 0.0043 20 6 3.2983 -3.4703 0.0046 21 7 3.6730 -4.7995 0.0067 22 16 1.6373 -2.8929 0.0034 23 6 2.2049 -1.2256 0.0021 24 1 -0.3634 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5136 27 1 2.7821 3.4878 1.2063 28 1 4.0439 2.6465 2.1380 29 1 4.4244 4.1682 1.2967 30 1 5.0606 5.3723 -3.3043 31 1 4.6132 -5.0384 0.0077 32 1 2.9961 -5.4942 0.0071 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332276285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:12 Heat of formation + Delta-G solvation = 30.639694 kcal Electronic energy + Delta-G solvation = -19607.037590 eV Core-core repulsion = 16501.389929 eV Total energy + Delta-G solvation = -3105.647661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27682 -39.84052 -38.52212 -36.75698 -35.29413 -34.35435 -32.40432 -30.69608 -28.92376 -27.40394 -26.65684 -24.18800 -23.04979 -22.23380 -20.40655 -19.11371 -18.96286 -18.46793 -17.73814 -17.21991 -16.89832 -16.52032 -16.09277 -15.46589 -15.42425 -14.79837 -14.70920 -14.47192 -14.38196 -13.63861 -13.45318 -13.13042 -13.05626 -12.94286 -12.66165 -12.55717 -12.23344 -11.87247 -11.85522 -11.34674 -10.93996 -10.85395 -10.78257 -10.65665 -9.58460 -8.94633 -8.44024 -6.49620 -1.00554 -0.23193 0.23837 0.59315 1.08196 1.13192 1.27957 1.30813 1.38748 2.12101 2.21651 2.35596 2.94421 2.97050 3.40950 3.54550 4.06386 4.31672 4.39817 4.55507 4.57423 4.61564 4.79392 4.84009 4.99376 5.21031 5.31298 5.36566 5.48874 5.83550 6.00619 6.14764 6.56813 6.63870 6.89892 7.00729 7.15394 8.71219 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024420 B = 0.005924 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.339167 B = 4725.211039 C = 5368.140941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.145 3.855 3 N -0.232 5.232 4 N -0.387 5.387 5 C 0.236 3.764 6 H 0.056 0.944 7 C -0.133 4.133 8 C -0.518 4.518 9 H 0.054 0.946 10 C 0.036 3.964 11 N -0.924 5.924 12 Si 0.920 3.080 13 H -0.284 1.284 14 H -0.264 1.264 15 H -0.246 1.246 16 C 0.513 3.487 17 O -0.581 6.581 18 C 0.063 3.937 19 N -0.554 5.554 20 C 0.347 3.653 21 N -0.782 5.782 22 S 0.239 5.761 23 C -0.229 4.229 24 H 0.114 0.886 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.273 0.727 31 H 0.422 0.578 32 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 -20.697 8.347 24.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 N -0.047 5.047 4 N -0.204 5.204 5 C 0.136 3.864 6 H 0.073 0.927 7 C -0.192 4.192 8 C -0.557 4.557 9 H 0.072 0.928 10 C -0.166 4.166 11 N -0.562 5.562 12 Si 0.744 3.256 13 H -0.211 1.211 14 H -0.189 1.189 15 H -0.170 1.170 16 C 0.304 3.696 17 O -0.463 6.463 18 C -0.077 4.077 19 N -0.280 5.280 20 C -0.030 4.030 21 N -0.337 5.337 22 S 0.487 5.513 23 C -0.358 4.358 24 H 0.132 0.868 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.256 0.744 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -10.823 -20.131 8.220 24.290 hybrid contribution 2.261 0.040 -0.330 2.285 sum -8.563 -20.092 7.890 23.222 Atomic orbital electron populations 1.20877 0.82198 1.05566 1.05965 1.22340 0.99592 0.84934 0.96839 1.75108 0.90399 1.24944 1.14241 1.49978 1.02052 1.07662 1.60687 1.19534 0.92504 0.77613 0.96713 0.92673 1.22030 1.02793 0.99468 0.94860 1.21133 0.99040 1.25136 1.10371 0.92767 1.25613 1.02070 0.94463 0.94405 1.69959 1.36564 1.26611 1.23047 0.86160 0.80822 0.77908 0.80742 1.21070 1.18856 1.16966 1.17387 0.87596 0.84615 0.79997 1.90834 1.14022 1.87289 1.54137 1.19609 0.90485 0.91693 1.05889 1.65753 1.37555 0.96947 1.27759 1.24296 0.92585 0.90814 0.95279 1.41533 1.13310 0.98850 1.80008 1.83923 1.02877 0.91427 1.73092 1.24890 0.96030 1.01434 1.13490 0.86818 0.89325 0.87595 0.91456 0.93812 0.91439 0.91763 0.74422 0.72693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 10.08 71.23 0.72 -0.94 16 2 C 0.14 4.62 6.91 43.48 0.30 4.92 16 3 N -0.23 -9.85 10.76 -46.93 -0.50 -10.35 16 4 N -0.39 -19.39 3.26 -453.85 -1.48 -20.87 16 5 C 0.24 12.59 2.35 44.25 0.10 12.70 16 6 H 0.06 3.16 4.00 -2.39 -0.01 3.15 16 7 C -0.13 -6.01 9.25 71.98 0.67 -5.35 16 8 C -0.52 -31.05 8.95 25.60 0.23 -30.82 16 9 H 0.05 3.54 7.95 -2.91 -0.02 3.51 16 10 C 0.04 2.14 5.47 84.65 0.46 2.60 16 11 N -0.92 -57.84 13.96 21.45 0.30 -57.54 16 12 Si 0.92 47.28 26.99 68.60 1.85 49.13 16 13 H -0.28 -15.27 7.11 99.48 0.71 -14.57 16 14 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 15 H -0.25 -11.92 6.82 99.48 0.68 -11.24 16 16 C 0.51 26.11 7.56 85.51 0.65 26.76 16 17 O -0.58 -33.70 16.40 -5.31 -0.09 -33.79 16 18 C 0.06 2.57 6.92 40.22 0.28 2.85 16 19 N -0.55 -19.70 10.60 -188.23 -1.99 -21.69 16 20 C 0.35 7.80 8.76 179.68 1.57 9.38 16 21 N -0.78 -8.89 9.05 -57.35 -0.52 -9.41 16 22 S 0.24 4.16 22.85 -56.49 -1.29 2.87 16 23 C -0.23 -7.13 6.37 23.18 0.15 -6.98 16 24 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 1.35 7.69 -2.38 -0.02 1.33 16 27 H 0.07 2.93 8.10 -2.39 -0.02 2.92 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 30 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 31 H 0.42 4.44 8.95 -92.71 -0.83 3.61 16 32 H 0.44 1.20 8.95 -92.71 -0.83 0.37 16 Total: -1.00 -87.17 294.03 0.91 -86.25 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -0.49 Total: 0.29 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 5.13 Total: 15.10 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -4.20 Total: -119.85 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.09 Total: -33.79 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.85 Total: 49.13 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.29 Total: 2.87 kcal Total: -87.17 0.91 -86.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332276285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.891 kcal (2) G-P(sol) polarization free energy of solvation -87.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds