Wall clock time and date at job start Tue Mar 31 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30248 * 119.65760 * 2 1 4 4 N 1.39772 * 121.01916 * 179.72899 * 3 2 1 5 5 C 1.46499 * 119.51834 * 180.19919 * 4 3 2 6 6 H 1.09002 * 109.47516 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47165 * 299.97581 * 5 4 3 8 8 C 1.50701 * 109.47203 * 59.97778 * 5 4 3 9 9 H 1.07998 * 120.00079 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99952 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99749 * 0.02562 * 10 8 5 12 12 Si 1.86794 * 119.99822 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46741 * 90.00316 * 12 10 8 14 14 H 1.48496 * 109.47222 * 210.00055 * 12 10 8 15 15 H 1.48502 * 109.47444 * 330.00822 * 12 10 8 16 16 C 1.34445 * 120.96633 * 0.17581 * 4 3 2 17 17 O 1.22006 * 120.15361 * 180.02562 * 16 4 3 18 18 C 1.43104 * 119.69508 * 0.02562 * 16 4 3 19 19 N 1.34266 * 129.24186 * 180.02562 * 18 16 4 20 20 C 1.29037 * 117.86302 * 179.97438 * 19 18 16 21 21 N 1.38106 * 124.90764 * 179.97438 * 20 19 18 22 22 S 1.75852 * 110.18360 * 0.02562 * 20 19 18 23 23 C 1.39163 * 117.60166 * 359.97438 * 18 16 4 24 24 H 1.08998 * 109.47364 * 269.89083 * 1 2 3 25 25 H 1.09009 * 109.47036 * 29.88844 * 1 2 3 26 26 H 1.09000 * 109.47428 * 149.88751 * 1 2 3 27 27 H 1.09000 * 109.47086 * 60.00140 * 7 5 4 28 28 H 1.08998 * 109.47350 * 179.97438 * 7 5 4 29 29 H 1.08994 * 109.47503 * 300.00394 * 7 5 4 30 30 H 0.97003 * 119.99453 * 179.97438 * 11 10 8 31 31 H 0.97000 * 120.00080 * 180.02562 * 21 20 19 32 32 H 0.97002 * 119.99883 * 0.02801 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1515 1.1318 0.0000 4 7 3.5488 1.1651 0.0057 5 6 4.2401 2.4567 0.0099 6 1 5.3176 2.2922 0.0145 7 6 3.8504 3.2479 -1.2403 8 6 3.8454 3.2337 1.2394 9 1 3.1496 2.8078 1.9471 10 6 4.3735 4.4879 1.4613 11 7 5.2212 5.0063 0.5998 12 14 3.8838 5.4512 2.9850 13 1 4.8193 5.1332 4.0935 14 1 3.9411 6.9056 2.6907 15 1 2.5017 5.0805 3.3820 16 6 4.2678 0.0290 0.0077 17 8 5.4869 0.0753 0.0132 18 6 3.5965 -1.2348 0.0036 19 7 4.1164 -2.4727 0.0051 20 6 3.2981 -3.4705 0.0009 21 7 3.6727 -4.7998 0.0013 22 16 1.6371 -2.8930 -0.0068 23 6 2.2049 -1.2257 -0.0020 24 1 -0.3634 -0.0020 1.0276 25 1 -0.3633 0.8911 -0.5121 26 1 -0.3634 -0.8890 -0.5156 27 1 2.7729 3.4125 -1.2449 28 1 4.3643 4.2090 -1.2369 29 1 4.1357 2.6859 -2.1296 30 1 5.5924 5.8888 0.7558 31 1 2.9957 -5.4944 -0.0024 32 1 4.6128 -5.0387 0.0053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332276288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:15 Heat of formation + Delta-G solvation = 59.806309 kcal Electronic energy + Delta-G solvation = -19526.213746 eV Core-core repulsion = 16421.830844 eV Total energy + Delta-G solvation = -3104.382902 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73808 -38.42907 -36.89317 -35.14869 -34.01744 -32.48425 -30.02895 -29.26901 -27.43178 -25.35527 -25.16052 -22.70424 -21.73346 -20.67432 -18.97643 -17.80716 -17.21044 -16.63362 -15.98348 -15.51425 -15.39458 -15.27834 -14.31369 -14.08440 -13.99936 -13.53679 -13.20398 -12.69509 -12.36437 -11.84721 -11.75097 -11.48756 -11.27677 -11.09473 -10.89209 -10.75073 -10.57401 -10.20045 -10.15164 -9.64894 -9.50953 -9.17660 -9.10900 -8.46214 -8.29009 -7.49388 -6.10266 -4.16979 0.32138 0.82223 1.44045 2.10033 2.37519 2.76376 3.20827 3.29747 3.35478 3.39986 3.95287 4.22376 4.39842 4.68115 4.83563 5.22173 5.31380 5.57856 5.63951 5.69965 6.12069 6.32698 6.62189 6.68384 6.83203 6.91404 6.94172 7.04420 7.53780 7.72021 7.74673 7.93830 8.08838 8.44599 8.65931 8.86085 9.47073 10.95939 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026201 B = 0.005299 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.400984 B = 5282.431809 C = 5696.996190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.113 3.887 3 N -0.179 5.179 4 N -0.371 5.371 5 C 0.269 3.731 6 H 0.081 0.919 7 C -0.145 4.145 8 C -0.518 4.518 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.889 5.889 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.284 1.284 15 H -0.273 1.273 16 C 0.531 3.469 17 O -0.520 6.520 18 C 0.085 3.915 19 N -0.500 5.500 20 C 0.352 3.648 21 N -0.812 5.812 22 S 0.100 5.900 23 C -0.201 4.201 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.012 0.988 30 H 0.265 0.735 31 H 0.416 0.584 32 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 -17.145 -2.336 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 N 0.005 4.995 4 N -0.190 5.190 5 C 0.172 3.828 6 H 0.098 0.902 7 C -0.203 4.203 8 C -0.557 4.557 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.527 5.527 12 Si 0.733 3.267 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.319 3.681 17 O -0.396 6.396 18 C -0.054 4.054 19 N -0.224 5.224 20 C -0.026 4.026 21 N -0.366 5.366 22 S 0.346 5.654 23 C -0.329 4.329 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.247 0.753 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.477 -16.465 -2.377 19.660 hybrid contribution 0.631 -0.087 0.841 1.055 sum -9.847 -16.553 -1.535 19.321 Atomic orbital electron populations 1.20557 0.86571 1.03693 1.03625 1.21328 0.97359 0.85647 1.02464 1.75087 0.92776 1.22368 1.09239 1.50159 1.00203 1.09155 1.59513 1.19484 0.93070 0.74128 0.96121 0.90189 1.22070 1.01048 1.02673 0.94511 1.21172 1.27457 1.01253 1.05814 0.91822 1.24864 0.94691 0.97102 0.97056 1.69870 1.30004 1.17443 1.35397 0.86371 0.78997 0.78826 0.82520 1.20583 1.20975 1.19738 1.16675 0.87872 0.82842 0.80685 1.90929 1.11861 1.86234 1.50544 1.20076 0.89088 0.92332 1.03900 1.65815 1.35195 0.96845 1.24518 1.23864 0.91069 0.90141 0.97514 1.41394 1.11891 1.00351 1.82982 1.84446 1.07179 0.97860 1.75926 1.24536 0.96881 0.97686 1.13791 0.89929 0.89475 0.90908 0.93755 0.88096 0.96939 0.92471 0.75305 0.75204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.08 36.01 0.36 -0.62 16 2 C 0.11 1.92 6.91 -82.20 -0.57 1.35 16 3 N -0.18 -3.80 10.75 33.82 0.36 -3.43 16 4 N -0.37 -9.10 3.26 -57.41 -0.19 -9.28 16 5 C 0.27 7.28 2.69 -69.08 -0.19 7.10 16 6 H 0.08 2.41 6.85 -51.93 -0.36 2.05 16 7 C -0.14 -3.62 9.08 37.16 0.34 -3.29 16 8 C -0.52 -14.61 8.56 -34.44 -0.29 -14.91 16 9 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 10 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 11 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 12 Si 0.91 21.49 29.54 -169.99 -5.02 16.46 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.53 13.07 7.56 -14.52 -0.11 12.96 16 17 O -0.52 -14.42 16.40 4.91 0.08 -14.34 16 18 C 0.08 1.73 6.92 -84.57 -0.59 1.15 16 19 N -0.50 -9.15 10.60 -10.84 -0.11 -9.27 16 20 C 0.35 4.57 8.76 -88.70 -0.78 3.79 16 21 N -0.81 -6.36 9.05 30.52 0.28 -6.08 16 22 S 0.10 1.13 22.85 -107.50 -2.46 -1.33 16 23 C -0.20 -3.36 6.37 -38.18 -0.24 -3.61 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 27 H 0.04 1.06 7.98 -51.93 -0.41 0.65 16 28 H 0.10 2.68 6.07 -51.93 -0.32 2.37 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.42 1.72 8.95 -40.82 -0.37 1.35 16 32 H 0.42 2.92 8.95 -40.82 -0.37 2.56 16 LS Contribution 294.36 15.07 4.44 4.44 Total: -1.00 -34.82 294.36 -7.18 -42.00 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -3.03 Total: -0.18 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.16 Total: 5.65 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.97 Total: -52.70 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.08 Total: -14.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.46 Total: -1.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.82 -7.18 -42.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332276288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.808 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds