Wall clock time and date at job start Tue Mar 31 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30248 * 119.65760 * 2 1 4 4 N 1.39772 * 121.01916 * 179.72899 * 3 2 1 5 5 C 1.46499 * 119.51834 * 180.19919 * 4 3 2 6 6 H 1.09002 * 109.47516 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47165 * 299.97581 * 5 4 3 8 8 C 1.50701 * 109.47203 * 59.97778 * 5 4 3 9 9 H 1.07998 * 120.00079 * 0.02562 * 8 5 4 10 10 C 1.37884 * 119.99952 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99749 * 0.02562 * 10 8 5 12 12 Si 1.86794 * 119.99822 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46741 * 90.00316 * 12 10 8 14 14 H 1.48496 * 109.47222 * 210.00055 * 12 10 8 15 15 H 1.48502 * 109.47444 * 330.00822 * 12 10 8 16 16 C 1.34445 * 120.96633 * 0.17581 * 4 3 2 17 17 O 1.22006 * 120.15361 * 180.02562 * 16 4 3 18 18 C 1.43104 * 119.69508 * 0.02562 * 16 4 3 19 19 N 1.34266 * 129.24186 * 180.02562 * 18 16 4 20 20 C 1.29037 * 117.86302 * 179.97438 * 19 18 16 21 21 N 1.38106 * 124.90764 * 179.97438 * 20 19 18 22 22 S 1.75852 * 110.18360 * 0.02562 * 20 19 18 23 23 C 1.39163 * 117.60166 * 359.97438 * 18 16 4 24 24 H 1.08998 * 109.47364 * 269.89083 * 1 2 3 25 25 H 1.09009 * 109.47036 * 29.88844 * 1 2 3 26 26 H 1.09000 * 109.47428 * 149.88751 * 1 2 3 27 27 H 1.09000 * 109.47086 * 60.00140 * 7 5 4 28 28 H 1.08998 * 109.47350 * 179.97438 * 7 5 4 29 29 H 1.08994 * 109.47503 * 300.00394 * 7 5 4 30 30 H 0.97003 * 119.99453 * 179.97438 * 11 10 8 31 31 H 0.97000 * 120.00080 * 180.02562 * 21 20 19 32 32 H 0.97002 * 119.99883 * 0.02801 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1515 1.1318 0.0000 4 7 3.5488 1.1651 0.0057 5 6 4.2401 2.4567 0.0099 6 1 5.3176 2.2922 0.0145 7 6 3.8504 3.2479 -1.2403 8 6 3.8454 3.2337 1.2394 9 1 3.1496 2.8078 1.9471 10 6 4.3735 4.4879 1.4613 11 7 5.2212 5.0063 0.5998 12 14 3.8838 5.4512 2.9850 13 1 4.8193 5.1332 4.0935 14 1 3.9411 6.9056 2.6907 15 1 2.5017 5.0805 3.3820 16 6 4.2678 0.0290 0.0077 17 8 5.4869 0.0753 0.0132 18 6 3.5965 -1.2348 0.0036 19 7 4.1164 -2.4727 0.0051 20 6 3.2981 -3.4705 0.0009 21 7 3.6727 -4.7998 0.0013 22 16 1.6371 -2.8930 -0.0068 23 6 2.2049 -1.2257 -0.0020 24 1 -0.3634 -0.0020 1.0276 25 1 -0.3633 0.8911 -0.5121 26 1 -0.3634 -0.8890 -0.5156 27 1 2.7729 3.4125 -1.2449 28 1 4.3643 4.2090 -1.2369 29 1 4.1357 2.6859 -2.1296 30 1 5.5924 5.8888 0.7558 31 1 2.9957 -5.4944 -0.0024 32 1 4.6128 -5.0387 0.0053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332276288.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:15 Heat of formation + Delta-G solvation = 32.186921 kcal Electronic energy + Delta-G solvation = -19527.411413 eV Core-core repulsion = 16421.830844 eV Total energy + Delta-G solvation = -3105.580568 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25378 -39.81349 -38.50608 -36.75550 -35.33101 -34.25610 -31.79989 -30.66581 -28.83145 -27.39026 -26.63273 -24.18282 -23.06255 -22.37385 -20.33609 -19.00576 -18.73126 -18.34912 -17.52725 -17.12703 -16.93466 -16.50818 -16.11813 -15.47639 -15.42616 -14.78343 -14.76070 -14.40938 -13.81686 -13.42857 -13.18448 -13.05975 -13.01077 -12.79888 -12.60229 -12.47156 -12.24128 -12.11936 -11.87833 -11.24512 -10.88665 -10.77971 -10.64199 -10.57644 -9.57639 -8.94412 -8.21249 -6.37193 -0.99770 -0.22776 0.23826 0.61051 1.12728 1.20689 1.41088 1.42517 1.54303 2.13218 2.34124 2.42260 2.96798 3.09833 3.41650 3.55362 4.13695 4.38361 4.55289 4.64461 4.75925 4.79392 4.84428 4.99928 5.07412 5.31099 5.43913 5.64005 5.81848 5.84837 6.01496 6.02640 6.62092 6.67685 6.90919 7.06155 7.30934 8.84897 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.026201 B = 0.005299 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.400984 B = 5282.431809 C = 5696.996190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.142 3.858 3 N -0.230 5.230 4 N -0.388 5.388 5 C 0.275 3.725 6 H 0.030 0.970 7 C -0.125 4.125 8 C -0.535 4.535 9 H 0.054 0.946 10 C 0.019 3.981 11 N -0.915 5.915 12 Si 0.974 3.026 13 H -0.279 1.279 14 H -0.272 1.272 15 H -0.264 1.264 16 C 0.512 3.488 17 O -0.582 6.582 18 C 0.063 3.937 19 N -0.554 5.554 20 C 0.347 3.653 21 N -0.782 5.782 22 S 0.240 5.760 23 C -0.229 4.229 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.017 0.983 30 H 0.270 0.730 31 H 0.437 0.563 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 -19.902 -1.740 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 N -0.045 5.045 4 N -0.205 5.205 5 C 0.175 3.825 6 H 0.048 0.952 7 C -0.184 4.184 8 C -0.573 4.573 9 H 0.073 0.927 10 C -0.181 4.181 11 N -0.553 5.553 12 Si 0.798 3.202 13 H -0.205 1.205 14 H -0.197 1.197 15 H -0.189 1.189 16 C 0.303 3.697 17 O -0.464 6.464 18 C -0.077 4.077 19 N -0.281 5.281 20 C -0.030 4.030 21 N -0.337 5.337 22 S 0.488 5.512 23 C -0.358 4.358 24 H 0.124 0.876 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.273 0.727 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -14.382 -19.322 -1.793 24.153 hybrid contribution 1.665 0.383 0.626 1.819 sum -12.717 -18.939 -1.167 22.843 Atomic orbital electron populations 1.20877 0.82057 1.05857 1.05721 1.22389 0.99661 0.84895 0.97017 1.75125 0.90344 1.24896 1.14108 1.49787 1.02058 1.08048 1.60609 1.18994 0.90992 0.75776 0.96690 0.95210 1.21825 1.01029 1.01436 0.94104 1.21297 1.27749 1.01950 1.06331 0.92734 1.25740 0.94405 0.97867 1.00122 1.69993 1.30536 1.17830 1.36980 0.85321 0.78809 0.77682 0.78406 1.20530 1.19659 1.18867 1.17387 0.87562 0.84635 0.80137 1.90850 1.14245 1.87307 1.53964 1.19594 0.90522 0.91605 1.05951 1.65746 1.37620 0.96967 1.27758 1.24297 0.92604 0.90797 0.95303 1.41532 1.13305 0.98837 1.80050 1.83884 1.02809 0.91331 1.73154 1.24906 0.95937 1.01493 1.13432 0.87577 0.88787 0.87274 0.92993 0.89906 0.96383 0.92118 0.72685 0.74440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 10.08 71.24 0.72 -0.91 16 2 C 0.14 4.59 6.91 43.48 0.30 4.89 16 3 N -0.23 -9.97 10.75 -46.93 -0.50 -10.47 16 4 N -0.39 -20.31 3.26 -453.84 -1.48 -21.79 16 5 C 0.27 16.01 2.69 44.25 0.12 16.13 16 6 H 0.03 2.00 6.85 -2.39 -0.02 1.99 16 7 C -0.13 -6.68 9.08 71.98 0.65 -6.03 16 8 C -0.53 -31.72 8.56 25.60 0.22 -31.50 16 9 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 10 C 0.02 1.07 5.30 84.66 0.45 1.52 16 11 N -0.92 -54.15 11.32 21.45 0.24 -53.91 16 12 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 C 0.51 27.11 7.56 85.51 0.65 27.76 16 17 O -0.58 -35.59 16.40 -5.34 -0.09 -35.68 16 18 C 0.06 2.63 6.92 40.21 0.28 2.91 16 19 N -0.55 -20.18 10.60 -188.22 -1.99 -22.17 16 20 C 0.35 7.95 8.76 179.68 1.57 9.52 16 21 N -0.78 -9.17 9.05 -57.35 -0.52 -9.69 16 22 S 0.24 4.22 22.85 -56.49 -1.29 2.93 16 23 C -0.23 -7.21 6.37 23.18 0.15 -7.06 16 24 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.11 1.28 7.69 -2.39 -0.02 1.26 16 27 H 0.05 2.61 7.98 -2.39 -0.02 2.59 16 28 H 0.08 4.67 6.07 -2.39 -0.01 4.66 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.44 1.30 8.95 -92.71 -0.83 0.47 16 32 H 0.42 4.62 8.95 -92.71 -0.83 3.79 16 Total: -1.00 -85.68 294.36 1.04 -84.64 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -0.46 Total: 1.99 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 5.10 Total: 17.22 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -4.25 Total: -118.02 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.09 Total: -35.68 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.29 Total: 2.93 kcal Total: -85.68 1.04 -84.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332276288.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.826 kcal (2) G-P(sol) polarization free energy of solvation -85.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds