Wall clock time and date at job start Tue Mar 31 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48500 * 109.46787 * 90.00662 * 3 2 1 5 5 H 1.48499 * 109.47596 * 330.00498 * 3 2 1 6 6 H 1.48498 * 109.47174 * 210.00219 * 3 2 1 7 7 C 1.37879 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99719 * 152.36062 * 7 2 1 9 9 C 1.50698 * 120.00247 * 332.35595 * 7 2 1 10 10 H 1.08999 * 109.47039 * 54.17624 * 9 7 2 11 11 N 1.46494 * 109.47274 * 174.17507 * 9 7 2 12 12 C 1.34780 * 120.00289 * 205.00358 * 11 9 7 13 13 O 1.21280 * 119.99543 * 359.97438 * 12 11 9 14 14 C 1.50698 * 120.00085 * 180.02562 * 12 11 9 15 15 C 1.52995 * 109.46881 * 179.97438 * 14 12 11 16 16 H 1.09002 * 112.41992 * 315.02244 * 15 14 12 17 17 C 1.52885 * 113.05087 * 185.62611 * 15 14 12 18 18 C 1.50573 * 82.45507 * 244.54500 * 17 15 14 19 19 O 1.21276 * 131.84721 * 179.97438 * 18 17 15 20 20 N 1.34606 * 96.30163 * 359.97438 * 18 17 15 21 21 C 1.53000 * 109.47034 * 294.17861 * 9 7 2 22 22 F 1.39901 * 109.47052 * 56.78781 * 21 9 7 23 23 F 1.39905 * 109.46823 * 176.78630 * 21 9 7 24 24 F 1.39895 * 109.46764 * 296.78639 * 21 9 7 25 25 H 0.96995 * 120.00440 * 174.45511 * 1 2 3 26 26 H 0.97002 * 120.00075 * 25.00441 * 11 9 7 27 27 H 1.08996 * 109.46987 * 299.99562 * 14 12 11 28 28 H 1.08999 * 109.47189 * 59.99929 * 14 12 11 29 29 H 1.08999 * 114.37937 * 357.93767 * 17 15 14 30 30 H 1.09002 * 114.37719 * 131.15040 * 17 15 14 31 31 H 0.97002 * 134.66164 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 1.4001 5 1 1.4467 2.6528 -0.6999 6 1 3.5467 1.4401 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 2.9921 -1.2473 -0.4345 9 6 1.3799 -2.4250 0.6044 10 1 0.4034 -2.5968 0.1518 11 7 2.2432 -3.5824 0.3572 12 6 1.7169 -4.8230 0.3338 13 8 0.5286 -4.9811 0.5179 14 6 2.6051 -6.0136 0.0800 15 6 1.7645 -7.2917 0.1061 16 1 1.0685 -7.3144 0.9447 17 6 2.6052 -8.5636 -0.0067 18 6 1.8523 -8.7088 -1.3025 19 8 1.8893 -9.5563 -2.1692 20 7 1.1244 -7.5835 -1.1773 21 6 1.2149 -2.2246 2.1122 22 9 0.4510 -1.0768 2.3493 23 9 0.5687 -3.3368 2.6625 24 9 2.4742 -2.0770 2.7035 25 1 -0.4850 -0.8360 -0.0812 26 1 3.1937 -3.4560 0.2103 27 1 3.0805 -5.9109 -0.8954 28 1 3.3710 -6.0671 0.8537 29 1 3.6743 -8.3872 -0.1250 30 1 2.3712 -9.3250 0.7374 31 1 0.4495 -7.1442 -1.7182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332464846.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:16 Heat of formation + Delta-G solvation = -230.907974 kcal Electronic energy + Delta-G solvation = -22587.139421 eV Core-core repulsion = 18453.247839 eV Total energy + Delta-G solvation = -4133.891582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.76950 -48.30174 -48.25229 -42.06478 -40.42920 -37.72161 -36.68284 -34.59181 -32.03366 -30.09026 -28.98919 -26.49631 -24.32315 -23.06005 -21.49593 -20.70839 -19.84837 -19.26024 -19.01976 -18.59617 -18.26001 -17.75047 -17.40482 -16.94838 -16.12396 -15.81536 -15.54705 -15.22751 -15.16142 -14.76258 -14.59400 -14.58198 -14.47131 -14.44503 -14.24045 -13.71415 -13.32591 -13.07542 -12.96559 -12.67568 -12.53765 -12.42334 -11.91219 -11.47401 -11.15754 -10.91348 -10.47692 -10.27117 -10.15882 -8.87783 -6.59261 1.49845 1.55308 1.57835 1.65422 1.81112 2.07256 2.28294 2.41490 2.50231 2.86986 2.99618 3.41770 3.52755 3.60428 3.70015 3.78516 4.07384 4.35572 4.58569 4.66625 4.68265 4.84910 5.11261 5.33622 5.38183 5.38828 5.98086 6.03072 6.28936 6.66328 7.12075 7.27201 7.31687 8.45443 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.004738 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.198534 B = 5907.982209 C = 6282.596437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.008 3.992 3 Si 1.104 2.896 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.652 4.652 8 H 0.085 0.915 9 C 0.240 3.760 10 H 0.042 0.958 11 N -0.702 5.702 12 C 0.496 3.504 13 O -0.579 6.579 14 C -0.136 4.136 15 C 0.137 3.863 16 H 0.099 0.901 17 C -0.137 4.137 18 C 0.505 3.495 19 O -0.580 6.580 20 N -0.736 5.736 21 C 0.415 3.585 22 F -0.192 7.192 23 F -0.204 7.204 24 F -0.187 7.187 25 H 0.262 0.738 26 H 0.417 0.583 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.148 0.852 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.647 -10.087 2.895 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.200 4.200 3 Si 0.924 3.076 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.687 4.687 8 H 0.103 0.897 9 C 0.132 3.868 10 H 0.059 0.941 11 N -0.353 5.353 12 C 0.285 3.715 13 O -0.459 6.459 14 C -0.176 4.176 15 C 0.031 3.969 16 H 0.117 0.883 17 C -0.177 4.177 18 C 0.292 3.708 19 O -0.459 6.459 20 N -0.394 5.394 21 C 0.359 3.641 22 F -0.173 7.173 23 F -0.186 7.186 24 F -0.169 7.169 25 H 0.072 0.928 26 H 0.254 0.746 27 H 0.138 0.862 28 H 0.171 0.829 29 H 0.174 0.826 30 H 0.166 0.834 31 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 8.561 -9.012 2.631 12.706 hybrid contribution -0.649 -0.984 -0.131 1.186 sum 7.912 -9.996 2.500 12.992 Atomic orbital electron populations 1.70852 1.08763 1.30801 1.40064 1.27226 0.95640 1.06353 0.90770 0.83152 0.75157 0.71386 0.77879 1.20318 1.21120 1.17974 1.21882 1.06248 0.93830 1.46728 0.89678 1.19232 0.94672 0.88096 0.84800 0.94060 1.45873 1.12739 1.05001 1.71694 1.21688 0.89265 0.85277 0.75267 1.90704 1.18280 1.86227 1.50692 1.22097 0.98574 0.89277 1.07646 1.21985 0.93784 0.94145 0.86965 0.88323 1.23694 1.03071 0.96678 0.94250 1.22877 0.80238 0.79773 0.87927 1.90694 1.69408 1.41429 1.44386 1.48220 1.41632 1.25614 1.23948 1.23004 0.72828 0.72616 0.95626 1.93127 1.76538 1.52011 1.95653 1.93096 1.82522 1.54248 1.88735 1.93025 1.41697 1.95575 1.86616 0.92835 0.74585 0.86152 0.82860 0.82646 0.83405 0.74577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.88 12.33 21.45 0.26 -48.62 16 2 C 0.01 0.42 4.23 84.66 0.36 0.78 16 3 Si 1.10 44.90 29.99 68.60 2.06 46.96 16 4 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.65 -31.46 8.32 25.60 0.21 -31.24 16 8 H 0.09 3.85 7.86 -2.91 -0.02 3.83 16 9 C 0.24 11.04 2.00 44.25 0.09 11.13 16 10 H 0.04 2.22 6.46 -2.39 -0.02 2.20 16 11 N -0.70 -24.30 4.94 -446.11 -2.20 -26.50 16 12 C 0.50 15.52 7.44 87.66 0.65 16.17 16 13 O -0.58 -23.26 14.34 -3.03 -0.04 -23.31 16 14 C -0.14 -2.31 5.59 29.85 0.17 -2.14 16 15 C 0.14 2.39 3.72 37.04 0.14 2.53 16 16 H 0.10 1.97 7.70 -2.39 -0.02 1.95 16 17 C -0.14 -1.55 8.15 29.77 0.24 -1.31 16 18 C 0.50 11.61 9.38 79.71 0.75 12.35 16 19 O -0.58 -18.90 18.03 -3.02 -0.05 -18.95 16 20 N -0.74 -16.54 7.45 -513.76 -3.83 -20.37 16 21 C 0.42 19.46 2.82 71.98 0.20 19.66 16 22 F -0.19 -10.00 14.70 44.97 0.66 -9.34 16 23 F -0.20 -9.40 15.77 44.97 0.71 -8.69 16 24 F -0.19 -8.09 16.97 44.97 0.76 -7.32 16 25 H 0.26 15.12 7.25 -92.71 -0.67 14.45 16 26 H 0.42 11.68 8.53 -92.71 -0.79 10.89 16 27 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.16 0.78 8.00 -2.39 -0.02 0.76 16 30 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.41 9.97 8.96 -92.71 -0.83 9.14 16 Total: -1.00 -71.69 286.67 0.83 -70.86 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -0.31 Total: 17.36 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 2.81 Total: 27.92 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -5.77 Total: -95.49 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -0.10 Total: -42.26 kcal Atomic # 9 Polarization: -27.49 SS G_CDS: 2.13 Total: -25.36 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.06 Total: 46.96 kcal Total: -71.69 0.83 -70.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332464846.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.044 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds