Wall clock time and date at job start Tue Mar 31 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99821 * 2 1 4 4 H 1.48500 * 109.46778 * 269.99728 * 3 2 1 5 5 H 1.48500 * 109.47415 * 29.99553 * 3 2 1 6 6 H 1.48499 * 109.47285 * 150.00027 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99652 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99745 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47273 * 60.00591 * 9 7 2 11 11 N 1.46506 * 109.46664 * 180.02562 * 9 7 2 12 12 C 1.34779 * 119.99907 * 205.00071 * 11 9 7 13 13 O 1.21286 * 119.99834 * 359.97438 * 12 11 9 14 14 C 1.50700 * 120.00169 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.47168 * 179.97438 * 14 12 11 16 16 H 1.08999 * 112.77934 * 46.29193 * 15 14 12 17 17 C 1.52354 * 113.47151 * 177.08305 * 15 14 12 18 18 C 1.49978 * 84.87940 * 114.77545 * 17 15 14 19 19 O 1.21280 * 133.24573 * 180.02562 * 18 17 15 20 20 N 1.33844 * 93.51470 * 359.97438 * 18 17 15 21 21 C 1.52997 * 109.47410 * 299.99750 * 9 7 2 22 22 F 1.39903 * 109.47521 * 300.00284 * 21 9 7 23 23 F 1.39904 * 109.47094 * 60.00565 * 21 9 7 24 24 F 1.39904 * 109.47280 * 180.02562 * 21 9 7 25 25 H 0.96997 * 119.99976 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00202 * 25.00748 * 11 9 7 27 27 H 1.08998 * 109.46857 * 60.00254 * 14 12 11 28 28 H 1.09001 * 109.46886 * 300.00260 * 14 12 11 29 29 H 1.09004 * 113.96546 * 0.79377 * 17 15 14 30 30 H 1.08995 * 114.10481 * 228.77318 * 17 15 14 31 31 H 0.96998 * 133.17692 * 179.73468 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6241 -2.5575 -0.8880 11 7 2.2032 -3.6126 0.0027 12 6 1.8371 -4.8127 -0.4895 13 8 0.7193 -4.9709 -0.9329 14 6 2.8162 -5.9583 -0.4880 15 6 2.1537 -7.1962 -1.0961 16 1 1.6196 -6.9777 -2.0208 17 6 3.0893 -8.3938 -1.2041 18 6 2.1676 -9.0333 -0.2087 19 8 2.1532 -10.1184 0.3327 20 7 1.3674 -7.9627 -0.1382 21 6 0.3720 -2.5794 1.2513 22 9 1.1767 -2.5045 2.3933 23 9 -0.5372 -1.5160 1.2510 24 9 -0.3271 -3.7912 1.2527 25 1 -0.4850 0.8400 0.0004 26 1 3.0970 -3.4862 0.3577 27 1 3.1199 -6.1753 0.5361 28 1 3.6924 -5.6881 -1.0774 29 1 4.0930 -8.2074 -0.8220 30 1 3.0864 -8.8741 -2.1825 31 1 0.5593 -7.7699 0.3624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332464849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:19 Heat of formation + Delta-G solvation = -210.581938 kcal Electronic energy + Delta-G solvation = -22663.891066 eV Core-core repulsion = 18530.880888 eV Total energy + Delta-G solvation = -4133.010179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.41812 -48.05590 -47.73134 -42.12736 -40.32562 -37.74636 -36.42716 -34.44401 -32.05393 -30.10543 -28.96616 -26.58090 -24.33964 -22.96468 -21.41525 -20.50927 -19.39493 -18.86412 -18.68452 -18.36866 -18.22259 -17.59418 -17.21217 -16.96350 -16.65397 -15.91885 -15.47377 -14.98138 -14.89768 -14.51757 -14.45696 -14.29321 -14.16132 -14.03400 -13.87580 -13.69647 -13.17343 -12.92229 -12.75089 -12.64719 -12.57019 -12.41198 -12.20556 -11.57385 -11.10668 -10.78166 -10.67191 -10.26179 -10.01420 -8.20882 -6.51192 1.47502 1.48937 1.53243 1.59908 1.73456 2.23001 2.40779 2.46485 2.56580 2.95362 3.13831 3.61601 3.76113 3.79353 3.88013 4.06042 4.21843 4.45084 4.63787 4.72444 4.88300 4.95938 5.16439 5.45854 5.50579 5.56973 5.66958 5.93099 6.54527 6.78031 7.18940 7.31308 7.43117 8.71656 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.004754 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.385947 B = 5887.865431 C = 6312.855916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.981 3.019 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.559 4.559 8 H 0.095 0.905 9 C 0.252 3.748 10 H 0.047 0.953 11 N -0.707 5.707 12 C 0.497 3.503 13 O -0.580 6.580 14 C -0.135 4.135 15 C 0.142 3.858 16 H 0.105 0.895 17 C -0.146 4.146 18 C 0.510 3.490 19 O -0.578 6.578 20 N -0.733 5.733 21 C 0.411 3.589 22 F -0.204 7.204 23 F -0.153 7.153 24 F -0.220 7.220 25 H 0.267 0.733 26 H 0.415 0.585 27 H 0.116 0.884 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.906 -7.789 -2.862 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.596 4.596 8 H 0.113 0.887 9 C 0.144 3.856 10 H 0.065 0.935 11 N -0.358 5.358 12 C 0.285 3.715 13 O -0.460 6.460 14 C -0.175 4.175 15 C 0.037 3.963 16 H 0.123 0.877 17 C -0.185 4.185 18 C 0.297 3.703 19 O -0.457 6.457 20 N -0.389 5.389 21 C 0.355 3.645 22 F -0.186 7.186 23 F -0.135 7.135 24 F -0.202 7.202 25 H 0.077 0.923 26 H 0.252 0.748 27 H 0.134 0.866 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.898 -8.341 -2.863 12.527 hybrid contribution -0.789 1.197 0.972 1.733 sum 8.109 -7.143 -1.891 10.970 Atomic orbital electron populations 1.70534 1.07549 1.28054 1.44921 1.26002 0.95830 1.03760 0.93571 0.85190 0.78556 0.77218 0.78565 1.19480 1.21456 1.18117 1.21255 0.94622 0.88348 1.55343 0.88717 1.19271 0.89045 0.87877 0.89412 0.93483 1.45992 1.17103 1.10123 1.62623 1.21604 0.89067 0.84437 0.76357 1.90705 1.23690 1.83678 1.47897 1.22068 0.98841 0.90495 1.06116 1.21796 0.90441 0.91716 0.92320 0.87716 1.23565 1.00882 0.92559 1.01505 1.22253 0.83596 0.82627 0.81836 1.90711 1.76406 1.23682 1.54908 1.48222 1.28460 1.16977 1.45220 1.23435 0.80860 0.72285 0.87906 1.92987 1.74113 1.96149 1.55377 1.93376 1.69094 1.54669 1.96328 1.93054 1.81689 1.48415 1.97033 0.92312 0.74778 0.86598 0.82482 0.83115 0.83721 0.75853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.46 9.50 21.45 0.20 -47.26 16 2 C 0.01 0.67 5.20 84.65 0.44 1.11 16 3 Si 0.98 39.01 29.54 68.60 2.03 41.03 16 4 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.56 -26.63 8.46 25.60 0.22 -26.41 16 8 H 0.09 4.08 7.74 -2.91 -0.02 4.06 16 9 C 0.25 11.78 2.21 44.24 0.10 11.88 16 10 H 0.05 2.57 7.58 -2.39 -0.02 2.55 16 11 N -0.71 -24.69 4.98 -446.08 -2.22 -26.92 16 12 C 0.50 15.74 7.36 87.66 0.65 16.38 16 13 O -0.58 -23.69 14.38 -3.05 -0.04 -23.73 16 14 C -0.14 -2.33 5.62 29.85 0.17 -2.16 16 15 C 0.14 2.52 3.84 41.58 0.16 2.68 16 16 H 0.10 2.03 7.76 -2.39 -0.02 2.01 16 17 C -0.15 -1.72 7.94 29.41 0.23 -1.49 16 18 C 0.51 12.07 9.58 84.23 0.81 12.88 16 19 O -0.58 -19.17 18.03 -3.03 -0.05 -19.23 16 20 N -0.73 -17.08 7.19 -488.22 -3.51 -20.59 16 21 C 0.41 20.47 2.81 71.98 0.20 20.67 16 22 F -0.20 -9.63 16.94 44.97 0.76 -8.87 16 23 F -0.15 -8.49 12.91 44.97 0.58 -7.91 16 24 F -0.22 -10.84 15.67 44.97 0.70 -10.14 16 25 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 26 H 0.42 11.61 8.54 -92.71 -0.79 10.82 16 27 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.15 0.87 7.99 -2.38 -0.02 0.85 16 30 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.40 10.39 8.96 -92.71 -0.83 9.56 16 Total: -1.00 -71.64 284.81 1.00 -70.63 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.41 Total: 17.43 kcal Atomic # 6 Polarization: 32.57 SS G_CDS: 2.97 Total: 35.54 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -5.53 Total: -94.76 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.10 Total: -42.96 kcal Atomic # 9 Polarization: -28.96 SS G_CDS: 2.05 Total: -26.92 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.03 kcal Total: -71.64 1.00 -70.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332464849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.951 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds