Wall clock time and date at job start Tue Mar 31 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 119.99493 * 2 1 4 4 H 1.48499 * 109.47109 * 269.99526 * 3 2 1 5 5 H 1.48498 * 109.47443 * 29.99943 * 3 2 1 6 6 H 1.48506 * 109.46872 * 149.99868 * 3 2 1 7 7 C 1.40044 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00029 * 0.02562 * 7 2 1 10 10 O 1.21692 * 120.00185 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00152 * 179.97438 * 9 7 2 12 12 C 1.47579 * 134.49439 * 179.97438 * 11 9 7 13 13 C 1.53950 * 86.11621 * 204.63969 * 12 11 9 14 14 C 1.53004 * 113.73988 * 221.94050 * 13 12 11 15 15 N 1.46501 * 109.46877 * 183.07251 * 14 13 12 16 16 C 1.34779 * 119.99823 * 180.02562 * 15 14 13 17 17 O 1.21275 * 119.99833 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99677 * 180.02562 * 16 15 14 19 19 F 1.39898 * 109.46727 * 180.02562 * 18 16 15 20 20 F 1.39903 * 109.46954 * 299.99670 * 18 16 15 21 21 F 1.39893 * 109.47171 * 60.00149 * 18 16 15 22 22 C 1.47925 * 134.49772 * 359.97438 * 11 9 7 23 23 H 0.96995 * 120.00675 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.77049 * 90.34034 * 12 11 9 25 25 H 1.08993 * 113.77081 * 318.93795 * 12 11 9 26 26 H 1.09002 * 113.74276 * 90.74001 * 13 12 11 27 27 H 1.08998 * 109.46823 * 303.07465 * 14 13 12 28 28 H 1.08998 * 109.46745 * 63.07477 * 14 13 12 29 29 H 0.97000 * 119.99767 * 0.02562 * 15 14 13 30 30 H 1.09006 * 113.87423 * 41.10256 * 22 11 9 31 31 H 1.08997 * 113.77410 * 269.60428 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.5545 -5.0697 0.0010 13 6 2.9280 -5.3423 0.6409 14 6 3.6372 -6.5747 0.0757 15 7 4.8942 -6.7884 0.7971 16 6 5.6924 -7.8233 0.4681 17 8 5.3698 -8.5779 -0.4249 18 6 6.9852 -8.0435 1.2107 19 9 7.6343 -9.1695 0.6930 20 9 7.8069 -6.9214 1.0592 21 9 6.7148 -8.2437 2.5685 22 6 3.3812 -4.0180 0.0001 23 1 -0.4851 0.8399 -0.0004 24 1 1.4424 -5.4949 -0.9964 25 1 0.7126 -5.2919 0.6566 26 1 2.9164 -5.3213 1.7307 27 1 2.9968 -7.4487 0.1945 28 1 3.8474 -6.4193 -0.9825 29 1 5.1519 -6.1851 1.5116 30 1 3.9966 -3.4011 0.6550 31 1 3.8045 -4.1349 -0.9975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332497903.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:16 Heat of formation + Delta-G solvation = -186.560876 kcal Electronic energy + Delta-G solvation = -21390.543423 eV Core-core repulsion = 17258.574876 eV Total energy + Delta-G solvation = -4131.968547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.65002 -48.17815 -48.13597 -40.29270 -39.03926 -36.18198 -34.95168 -32.55692 -30.34561 -28.19297 -26.61080 -25.53634 -24.64279 -21.79485 -20.94343 -19.41028 -19.10364 -18.93307 -18.80541 -16.81530 -16.59025 -16.06040 -15.76086 -15.55299 -14.97254 -14.87959 -14.60693 -14.54351 -14.25958 -14.24702 -14.15298 -14.00316 -13.57259 -13.36538 -12.43544 -12.20629 -12.08994 -11.57139 -11.23970 -11.18472 -10.93223 -10.75561 -10.64089 -10.36416 -10.16363 -9.66253 -8.94199 -7.75123 -7.40981 -6.28657 -4.74359 1.45281 1.56121 2.73894 3.08383 3.15179 3.18476 3.33259 3.74333 3.78039 3.91206 4.20269 4.41688 4.54693 4.77238 5.12124 5.33178 5.49433 5.61379 5.71168 5.87321 5.89491 6.04907 6.08053 6.54032 6.60842 6.63638 7.21877 7.34685 7.99072 8.34833 8.92651 9.44191 10.47196 10.66349 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.003382 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.064149 B = 8277.047098 C = 8928.899664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.577 3.423 10 O -0.573 6.573 11 N -0.663 5.663 12 C 0.119 3.881 13 C -0.144 4.144 14 C 0.125 3.875 15 N -0.693 5.693 16 C 0.481 3.519 17 O -0.481 6.481 18 C 0.450 3.550 19 F -0.155 7.155 20 F -0.167 7.167 21 F -0.168 7.168 22 C 0.117 3.883 23 H 0.270 0.730 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.413 0.587 30 H 0.072 0.928 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.861 -13.184 3.558 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.134 4.134 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.385 3.615 10 O -0.455 6.455 11 N -0.405 5.405 12 C -0.006 4.006 13 C -0.164 4.164 14 C 0.002 3.998 15 N -0.345 5.345 16 C 0.258 3.742 17 O -0.353 6.353 18 C 0.392 3.608 19 F -0.136 7.136 20 F -0.148 7.148 21 F -0.150 7.150 22 C -0.008 4.008 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.123 0.877 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.249 0.751 30 H 0.091 0.909 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.623 -13.387 2.912 18.629 hybrid contribution 0.965 1.021 0.452 1.476 sum 13.588 -12.366 3.364 18.678 Atomic orbital electron populations 1.70010 1.07107 1.27536 1.34970 1.25738 0.94671 1.00388 0.92581 0.86323 0.80099 0.81141 0.78937 1.19642 1.20336 1.18852 1.20800 0.93570 0.88778 1.54204 0.91366 1.18089 0.86547 0.80856 0.76039 1.90627 1.13834 1.85484 1.55595 1.50317 1.05561 1.03935 1.80638 1.22630 0.94570 0.84478 0.98882 1.23629 0.97931 0.93301 1.01503 1.21732 0.82485 0.98878 0.96664 1.45984 1.22076 1.28177 1.38244 1.20222 0.84823 0.83757 0.85350 1.90885 1.71363 1.44400 1.28674 1.20326 0.86822 0.75435 0.78232 1.93265 1.82307 1.51586 1.86469 1.93280 1.74609 1.51609 1.95313 1.93268 1.93713 1.94872 1.33102 1.22898 0.87199 0.91769 0.98914 0.91912 0.91606 0.91084 0.87733 0.90003 0.89833 0.75137 0.90939 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.71 11.83 55.55 0.66 -22.05 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 3 Si 0.91 19.68 29.56 -169.99 -5.02 14.65 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.54 -14.90 9.33 -35.64 -0.33 -15.23 16 8 H 0.07 1.73 7.68 -52.49 -0.40 1.33 16 9 C 0.58 16.28 7.98 -12.99 -0.10 16.18 16 10 O -0.57 -18.61 15.75 5.20 0.08 -18.53 16 11 N -0.66 -14.28 3.62 -179.72 -0.65 -14.93 16 12 C 0.12 1.95 8.40 -2.97 -0.02 1.92 16 13 C -0.14 -1.72 3.93 -89.69 -0.35 -2.08 16 14 C 0.12 1.21 5.51 -4.04 -0.02 1.19 16 15 N -0.69 -5.96 5.56 -60.29 -0.33 -6.29 16 16 C 0.48 4.94 7.36 -10.98 -0.08 4.86 16 17 O -0.48 -6.50 16.61 5.56 0.09 -6.41 16 18 C 0.45 4.12 3.43 36.01 0.12 4.25 16 19 F -0.16 -1.63 16.92 2.25 0.04 -1.59 16 20 F -0.17 -1.48 17.30 2.25 0.04 -1.44 16 21 F -0.17 -1.44 17.30 2.25 0.04 -1.41 16 22 C 0.12 1.79 8.03 -2.77 -0.02 1.77 16 23 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 24 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.85 7.88 -51.93 -0.41 0.44 16 29 H 0.41 2.68 8.47 -40.82 -0.35 2.34 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -35.39 296.15 -4.32 -39.71 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -2.81 Total: -1.32 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -0.91 Total: 15.13 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.33 Total: -43.27 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.17 Total: -24.94 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.12 Total: -4.43 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.39 -4.32 -39.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332497903.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.849 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds