Wall clock time and date at job start Tue Mar 31 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 119.99493 * 2 1 4 4 H 1.48499 * 109.47109 * 269.99526 * 3 2 1 5 5 H 1.48498 * 109.47443 * 29.99943 * 3 2 1 6 6 H 1.48506 * 109.46872 * 149.99868 * 3 2 1 7 7 C 1.40044 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00029 * 0.02562 * 7 2 1 10 10 O 1.21692 * 120.00185 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00152 * 179.97438 * 9 7 2 12 12 C 1.47579 * 134.49439 * 179.97438 * 11 9 7 13 13 C 1.53950 * 86.11621 * 204.63969 * 12 11 9 14 14 C 1.53004 * 113.73988 * 221.94050 * 13 12 11 15 15 N 1.46501 * 109.46877 * 183.07251 * 14 13 12 16 16 C 1.34779 * 119.99823 * 180.02562 * 15 14 13 17 17 O 1.21275 * 119.99833 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99677 * 180.02562 * 16 15 14 19 19 F 1.39898 * 109.46727 * 180.02562 * 18 16 15 20 20 F 1.39903 * 109.46954 * 299.99670 * 18 16 15 21 21 F 1.39893 * 109.47171 * 60.00149 * 18 16 15 22 22 C 1.47925 * 134.49772 * 359.97438 * 11 9 7 23 23 H 0.96995 * 120.00675 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.77049 * 90.34034 * 12 11 9 25 25 H 1.08993 * 113.77081 * 318.93795 * 12 11 9 26 26 H 1.09002 * 113.74276 * 90.74001 * 13 12 11 27 27 H 1.08998 * 109.46823 * 303.07465 * 14 13 12 28 28 H 1.08998 * 109.46745 * 63.07477 * 14 13 12 29 29 H 0.97000 * 119.99767 * 0.02562 * 15 14 13 30 30 H 1.09006 * 113.87423 * 41.10256 * 22 11 9 31 31 H 1.08997 * 113.77410 * 269.60428 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.5545 -5.0697 0.0010 13 6 2.9280 -5.3423 0.6409 14 6 3.6372 -6.5747 0.0757 15 7 4.8942 -6.7884 0.7971 16 6 5.6924 -7.8233 0.4681 17 8 5.3698 -8.5779 -0.4249 18 6 6.9852 -8.0435 1.2107 19 9 7.6343 -9.1695 0.6930 20 9 7.8069 -6.9214 1.0592 21 9 6.7148 -8.2437 2.5685 22 6 3.3812 -4.0180 0.0001 23 1 -0.4851 0.8399 -0.0004 24 1 1.4424 -5.4949 -0.9964 25 1 0.7126 -5.2919 0.6566 26 1 2.9164 -5.3213 1.7307 27 1 2.9968 -7.4487 0.1945 28 1 3.8474 -6.4193 -0.9825 29 1 5.1519 -6.1851 1.5116 30 1 3.9966 -3.4011 0.6550 31 1 3.8045 -4.1349 -0.9975 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332497903.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:15 Heat of formation + Delta-G solvation = -214.068724 kcal Electronic energy + Delta-G solvation = -21391.736253 eV Core-core repulsion = 17258.574876 eV Total energy + Delta-G solvation = -4133.161377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.38515 -48.89735 -48.88495 -41.25102 -40.38952 -38.03966 -36.02151 -34.64746 -31.60725 -29.48167 -28.17137 -26.87981 -26.01860 -22.61594 -22.20086 -20.75103 -19.99172 -19.82570 -19.69021 -18.61837 -17.65615 -17.43358 -16.98958 -16.61446 -16.21723 -15.75509 -15.62918 -15.56837 -15.44211 -15.27114 -14.99076 -14.98259 -14.65038 -14.43481 -14.09837 -13.79194 -13.43562 -13.11008 -12.98401 -12.78111 -12.45141 -12.23559 -12.02452 -11.76909 -11.50210 -10.95977 -10.48703 -9.87606 -9.17237 -8.31737 -6.87843 0.64449 0.77170 1.39377 1.40722 1.56341 1.99153 2.20327 2.42095 2.56876 2.62488 2.99201 3.05310 3.41869 3.51208 3.85784 4.16182 4.20127 4.61018 4.66202 4.68531 4.76893 4.78351 4.93015 5.17427 5.29573 5.37088 5.86532 5.95470 6.42686 6.49662 6.84383 7.55649 8.42819 8.64719 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.003382 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.064149 B = 8277.047098 C = 8928.899664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.564 4.564 8 H 0.086 0.914 9 C 0.557 3.443 10 O -0.636 6.636 11 N -0.684 5.684 12 C 0.107 3.893 13 C -0.104 4.104 14 C 0.135 3.865 15 N -0.680 5.680 16 C 0.486 3.514 17 O -0.515 6.515 18 C 0.461 3.539 19 F -0.163 7.163 20 F -0.162 7.162 21 F -0.162 7.162 22 C 0.113 3.887 23 H 0.275 0.725 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.425 0.575 30 H 0.081 0.919 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 -13.234 4.036 21.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.600 4.600 8 H 0.105 0.895 9 C 0.365 3.635 10 O -0.523 6.523 11 N -0.423 5.423 12 C -0.016 4.016 13 C -0.123 4.123 14 C 0.012 3.988 15 N -0.332 5.332 16 C 0.264 3.736 17 O -0.390 6.390 18 C 0.402 3.598 19 F -0.144 7.144 20 F -0.144 7.144 21 F -0.143 7.143 22 C -0.010 4.010 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.139 0.861 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.264 0.736 30 H 0.099 0.901 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.215 -13.484 3.415 20.615 hybrid contribution 0.199 0.928 0.304 0.996 sum 15.414 -12.557 3.719 20.226 Atomic orbital electron populations 1.70189 1.09622 1.29063 1.36478 1.27022 0.95529 1.05041 0.91181 0.85003 0.78837 0.74917 0.79453 1.18673 1.19773 1.16934 1.21331 0.94590 0.89598 1.54511 0.89541 1.18408 0.86147 0.83177 0.75782 1.90560 1.16355 1.87239 1.58195 1.50150 1.08836 1.04369 1.78944 1.22938 0.96896 0.81620 1.00170 1.23230 0.94430 0.92684 1.01941 1.21546 0.82860 0.97851 0.96575 1.45835 1.21359 1.27872 1.38125 1.20286 0.85022 0.83435 0.84865 1.90880 1.72237 1.45670 1.30240 1.20028 0.86236 0.75264 0.78236 1.93253 1.82404 1.52095 1.86654 1.93295 1.74434 1.51326 1.95314 1.93287 1.93650 1.94838 1.32568 1.23261 0.84041 0.93171 1.00524 0.91494 0.90127 0.92183 0.86142 0.88881 0.89652 0.73621 0.90098 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.36 11.83 21.83 0.26 -50.10 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 40.11 29.56 68.60 2.03 42.14 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.56 -31.58 9.33 24.83 0.23 -31.35 16 8 H 0.09 4.32 7.68 -2.91 -0.02 4.30 16 9 C 0.56 32.33 7.98 86.36 0.69 33.02 16 10 O -0.64 -43.26 15.75 -4.32 -0.07 -43.33 16 11 N -0.68 -29.36 3.62 -840.72 -3.04 -32.40 16 12 C 0.11 3.42 8.40 86.49 0.73 4.15 16 13 C -0.10 -2.20 3.93 -10.13 -0.04 -2.23 16 14 C 0.13 2.17 5.51 86.38 0.48 2.65 16 15 N -0.68 -9.44 5.56 -463.05 -2.57 -12.02 16 16 C 0.49 8.75 7.36 87.66 0.64 9.39 16 17 O -0.52 -12.94 16.61 -3.01 -0.05 -12.99 16 18 C 0.46 7.36 3.43 71.24 0.24 7.60 16 19 F -0.16 -3.14 16.92 44.97 0.76 -2.38 16 20 F -0.16 -2.45 17.30 44.97 0.78 -1.67 16 21 F -0.16 -2.37 17.30 44.97 0.78 -1.59 16 22 C 0.11 3.20 8.03 86.42 0.69 3.90 16 23 H 0.28 15.18 8.29 -92.71 -0.77 14.41 16 24 H 0.08 2.33 8.10 -2.39 -0.02 2.31 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.46 7.88 -2.39 -0.02 1.44 16 29 H 0.43 3.92 8.47 -92.71 -0.79 3.13 16 30 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.08 2.11 7.92 -2.39 -0.02 2.10 16 Total: -1.00 -80.74 296.15 3.42 -77.32 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.41 Total: 7.92 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 4.14 Total: 29.09 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -5.35 Total: -94.52 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -0.12 Total: -56.32 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 2.32 Total: -5.64 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -80.74 3.42 -77.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332497903.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.750 kcal (2) G-P(sol) polarization free energy of solvation -80.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds