Wall clock time and date at job start Tue Mar 31 2020 02:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30256 * 125.61645 * 2 1 4 4 C 1.34476 * 108.69698 * 179.77519 * 3 2 1 5 5 C 1.34334 * 107.67223 * 0.39168 * 4 3 2 6 6 C 1.50698 * 126.44582 * 179.87840 * 5 4 3 7 7 S 1.81001 * 109.47052 * 89.70811 * 6 5 4 8 8 C 1.76202 * 99.99784 * 179.97438 * 7 6 5 9 9 N 1.32388 * 126.26021 * 359.97438 * 8 7 6 10 10 N 1.28516 * 110.20609 * 180.02562 * 9 8 7 11 11 C 1.33098 * 109.74302 * 0.02562 * 10 9 8 12 12 C 1.39776 * 126.56257 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99778 * 186.09356 * 12 11 10 14 14 C 1.40085 * 120.00068 * 6.08606 * 12 11 10 15 15 N 1.30808 * 119.99942 * 184.12744 * 14 12 11 16 16 Si 1.86799 * 119.99669 * 4.13543 * 14 12 11 17 17 H 1.48509 * 109.46950 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47355 * 299.99259 * 16 14 12 19 19 H 1.48501 * 109.47215 * 59.99928 * 16 14 12 20 20 N 1.36669 * 126.25987 * 180.30691 * 8 7 6 21 21 C 1.46505 * 127.15024 * 359.97438 * 20 8 7 22 22 O 1.33968 * 125.62176 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47430 * 269.97775 * 1 2 3 24 24 H 1.09001 * 109.47154 * 29.98167 * 1 2 3 25 25 H 1.08998 * 109.46611 * 149.97838 * 1 2 3 26 26 H 1.08005 * 126.16757 * 180.26906 * 4 3 2 27 27 H 1.09003 * 109.46642 * 329.70896 * 6 5 4 28 28 H 1.08993 * 109.47041 * 209.71224 * 6 5 4 29 29 H 0.97000 * 120.00392 * 354.84969 * 15 14 12 30 30 H 1.08991 * 109.47295 * 270.14314 * 21 20 8 31 31 H 1.08996 * 109.46934 * 30.14387 * 21 20 8 32 32 H 1.09000 * 109.46691 * 150.13746 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6675 0.0050 5 6 3.5698 -0.6757 -0.0006 6 6 4.7937 -1.5549 -0.0006 7 16 5.2836 -1.9070 1.7059 8 6 6.6947 -2.9216 1.4160 9 7 7.1788 -3.2704 0.2342 10 7 8.2152 -4.0160 0.3815 11 6 8.4610 -4.1931 1.6775 12 6 9.5020 -4.9427 2.2327 13 1 9.5463 -5.0971 3.3007 14 6 10.4877 -5.4939 1.4038 15 7 11.4159 -6.2621 1.9131 16 14 10.4765 -5.1317 -0.4287 17 1 11.6163 -5.8281 -1.0779 18 1 9.2015 -5.6107 -1.0203 19 1 10.6034 -3.6680 -0.6448 20 7 7.4858 -3.4977 2.3699 21 6 7.3344 -3.3974 3.8237 22 8 2.2873 -1.0890 -0.0005 23 1 -0.3634 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3632 -0.8898 -0.5142 26 1 4.4157 1.3162 0.0104 27 1 5.6081 -1.0439 -0.5143 28 1 4.5696 -2.4895 -0.5146 29 1 11.4667 -6.3901 2.8732 30 1 7.8956 -2.5374 4.1889 31 1 6.2800 -3.2751 4.0715 32 1 7.7147 -4.3052 4.2920 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334310992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:44 Heat of formation + Delta-G solvation = 76.965578 kcal Electronic energy + Delta-G solvation = -18519.926232 eV Core-core repulsion = 15416.287411 eV Total energy + Delta-G solvation = -3103.638820 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.48047 -41.01724 -34.90517 -34.02269 -33.69877 -33.26304 -30.47394 -30.00176 -26.85627 -25.96048 -25.16633 -22.49447 -21.56863 -21.22703 -20.25374 -18.27396 -17.35864 -17.05989 -16.53105 -15.38704 -15.17713 -14.72210 -14.53631 -14.25976 -13.78443 -13.49179 -13.37800 -13.17879 -13.01783 -12.78069 -12.68306 -12.52635 -12.01496 -11.42388 -11.23141 -10.95344 -10.73138 -10.63692 -9.97495 -9.64865 -9.46715 -9.19269 -8.79800 -8.75950 -8.46201 -7.49077 -7.22829 -4.91861 0.91767 1.87543 2.36778 2.47108 2.66277 2.82153 3.52424 3.54356 3.80235 3.85159 3.99185 4.08223 4.36075 4.50935 4.85472 4.87684 5.04383 5.06136 5.21654 5.26171 5.31543 5.51164 5.66810 5.71718 5.84706 5.85222 6.16924 6.28051 6.56521 7.03754 7.33359 7.44117 7.54623 7.97890 8.27302 8.48318 9.89471 10.02114 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.039059 B = 0.003837 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.699341 B = 7295.492004 C = 7734.978259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.190 3.810 3 N -0.485 5.485 4 C -0.016 4.016 5 C -0.031 4.031 6 C -0.014 4.014 7 S -0.023 6.023 8 C 0.060 3.940 9 N -0.268 5.268 10 N -0.414 5.414 11 C 0.346 3.654 12 C -0.490 4.490 13 H 0.084 0.916 14 C 0.064 3.936 15 N -0.805 5.805 16 Si 1.112 2.888 17 H -0.310 1.310 18 H -0.260 1.260 19 H -0.280 1.280 20 N -0.512 5.512 21 C 0.101 3.899 22 O -0.195 6.195 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.189 0.811 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.284 0.716 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.013 9.704 0.442 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.017 4.017 3 N -0.215 5.215 4 C -0.158 4.158 5 C -0.085 4.085 6 C -0.162 4.162 7 S 0.205 5.795 8 C -0.314 4.314 9 N -0.112 5.112 10 N -0.265 5.265 11 C 0.104 3.896 12 C -0.531 4.531 13 H 0.102 0.898 14 C -0.159 4.159 15 N -0.429 5.429 16 Si 0.940 3.060 17 H -0.240 1.240 18 H -0.186 1.186 19 H -0.206 1.206 20 N -0.213 5.213 21 C -0.043 4.043 22 O -0.082 6.082 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.107 0.893 26 H 0.206 0.794 27 H 0.144 0.856 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.828 10.089 -1.354 18.818 hybrid contribution 0.142 -0.742 2.211 2.337 sum -15.686 9.347 0.857 18.280 Atomic orbital electron populations 1.20263 0.81250 1.05115 1.04747 1.26335 0.96517 0.78719 1.00176 1.70478 1.01996 1.30226 1.18763 1.23131 0.95212 0.92675 1.04737 1.22546 0.82913 0.94744 1.08337 1.21599 0.93237 1.02668 0.98743 1.84877 1.26834 1.59937 1.07832 1.25373 1.04137 1.12540 0.89330 1.74246 1.06781 1.11070 1.19106 1.74002 1.14908 1.24958 1.12585 1.21715 0.89073 0.91514 0.87321 1.19420 1.06513 1.30321 0.96858 0.89812 1.27374 0.89916 0.89128 1.09452 1.70673 1.30087 1.25543 1.16558 0.82710 0.75381 0.77304 0.70575 1.24033 1.18564 1.20633 1.45813 1.25797 1.43609 1.06061 1.21555 1.01738 1.02863 0.78181 1.84399 1.16400 1.37641 1.69770 0.88852 0.88098 0.89286 0.79438 0.85553 0.86958 0.90483 0.92031 0.91186 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.02 16 2 C 0.19 2.19 8.34 -12.94 -0.11 2.08 16 3 N -0.48 -6.39 11.29 -11.10 -0.13 -6.51 16 4 C -0.02 -0.20 11.80 -17.77 -0.21 -0.41 16 5 C -0.03 -0.42 6.64 -35.69 -0.24 -0.66 16 6 C -0.01 -0.21 5.77 36.00 0.21 0.00 16 7 S -0.02 -0.39 21.77 -107.50 -2.34 -2.73 16 8 C 0.06 1.32 8.09 -87.28 -0.71 0.62 16 9 N -0.27 -6.70 11.62 30.89 0.36 -6.34 16 10 N -0.41 -11.34 7.52 31.26 0.23 -11.10 16 11 C 0.35 9.12 7.27 -154.81 -1.13 8.00 16 12 C -0.49 -13.00 9.50 -38.31 -0.36 -13.37 16 13 H 0.08 2.15 7.46 -52.49 -0.39 1.76 16 14 C 0.06 1.72 5.52 -17.29 -0.10 1.62 16 15 N -0.80 -21.39 13.65 55.56 0.76 -20.64 16 16 Si 1.11 27.70 25.90 -169.99 -4.40 23.30 16 17 H -0.31 -7.43 7.11 56.52 0.40 -7.03 16 18 H -0.26 -6.68 6.76 56.52 0.38 -6.29 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 20 N -0.51 -11.67 3.26 -123.18 -0.40 -12.07 16 21 C 0.10 1.76 10.89 59.85 0.65 2.41 16 22 O -0.19 -2.62 10.77 5.37 0.06 -2.57 16 23 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.19 1.97 8.06 -52.48 -0.42 1.54 16 27 H 0.13 1.78 8.14 -51.91 -0.42 1.36 16 28 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.28 7.15 8.72 -40.82 -0.36 6.80 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 32 H 0.08 1.35 7.48 -51.93 -0.39 0.96 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -32.56 299.51 -6.27 -38.83 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -3.32 Total: -5.00 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.61 Total: 0.32 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.83 Total: -56.66 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: 0.06 Total: -2.57 kcal Atomic # 14 Polarization: 27.70 SS G_CDS: -4.40 Total: 23.30 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.34 Total: -2.73 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.56 -6.27 -38.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334310992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.795 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds